Publications and Patents

Publications

2019

  1. Weidmann, J., Schnölzer, M., Dawson, P.E. & Hoheisel, J.D. (2019). Copying life: synthesis of an enzymatically active mirror-image DNA-ligase made of D-amino acids. CELL Chem. Biol., in press. [PDF]
  2. Bakadlag, R., Jandaghi, P., Hoheisel, J.D. & Riazalhosseini, Y. (2019). The potential of dopamine receptor 2 (DRD2) as a therapeutic target for tackling pancreatic cancer. Expert Opin. Ther. Tar. 23, 365-367. [PDF]
  3. Amini, M., Foroughi, K., Talebi, F., Haji, H.A., Kamali, F., Jandaghi, P., Hoheisel, J.D. & Manoochehri, M. (2019). GHSR DNA hypermethylation is a new epigenetic biomarker for gastric adenocarcinoma and beyond. J. Cell. Physiol., in press. [PDF]
  4. Marzoq, A.J., Mustafa, S., Heidrich, L., Hoheisel, J.D. & Alhamdani, A.S.S. (2019). Impact of the secretome of activated pancreatic stellate cells on growth and differentiation of pancreatic tumour cells. Sci. Rep. 9, 5303. [PDF]
  5. Visvanathan, A., Patil, V., Abdulla, S., Hoheisel, J.D. & Somasundaram, K. (2019). N6-Methyladenosine landscape of glioma stem-like cells: METTL3 plays a crucial role in post-transcriptional RNA metabolism. Genes, in press.
  6. Bermejo, J.L., Huang, G., Manoocheri, M., Mesa, K.G., Schick, M., Silos, R.G., Ko, Y.D., Brüning, T., Brauch, H., Lo, W.-Y., Hoheisel, J.D. & Hamann, U. (2018). Long intergenic non-protein coding RNA 299 methylation in peripheral blood is a biomarker for triple-negative breast cancer. Epigenomics 11, 81-93. (doi: 10.2217/epi-2018-0121)
  7. Hufnagel, K., Reininger, D., Ng, S.W., Gassert, N., Rohland, J.K., Shahryarhesami, S., Bauer, A.S., Waterboer, T. & Hoheisel, J.D. (2019). In situ, cell-free protein expression on microarrays and their use for the detection of immune responses. Bio-protocol 9, e3152. [PDF]

2018

  1. Di, C., Syafrizayanti, Y., Zhang, Q., Chen, Y., Liu, Y., Wang, Y., Zhang, X., Liu, Y., Sun, C., Zhang, H. & Hoheisel, J.D. (2018). Function, clinical application, and strategies of pre-mRNA splicing in cancer. Cell Death Differ., doi: 10.1038/s41418-018-0231-3.
  2. Bermejo, J.L., Huang, G., Manoocheri, M., Mesa, K.G., Schick, M., Silos, R.G., Ko, Y.D., Brüning, T., Brauch, H., Lo, W.-Y., Hoheisel, J.D. & Hamann, U. (2018). Long intergenic non-protein coding RNA 299 methylation in peripheral blood is a biomarker for triple-negative breast cancer. Epigenomics 11, 81-93. (doi: 10.2217/epi-2018-0121)
  3. Bure, I., Geer, S., Knopf, J., Roas, M., Henze, S., Ströbel, P., Agaimy, A., Wiemann, S., Hoheisel, J.D., Hartmann, A., Haller, F., Moskalev, E.A. (2018). Long non-coding RNA HOTAIR is upregulated in an aggressive subgroup of gastrointestinal stromal tumors (GIST) and mediates the establishment of gene-specific DNA-methylation patterns. Genes Chrom. Cancer 57, 584-597. (doi: 10.1002/gcc.22672)
  4. Patry, C., Remme, C., Betzen, C., Tonshoff, B., Yard, B.A., Beck, G. & Rafat, N. (2018). VCAM-1 expression is upregulated by CD34+/CD133+-stem cells derived from septic patients. PLOS ONE 13, e0195064. (doi: 10.1371/journal.pone.0195064)
  5. Patry, C., Betzen, C., Fathalizadeh, F., Fichtner, A., Westhoff, J.H., Fleming, T., Eckstein, V., Bruckner, T., Bielaszewska, M., Karch, H., Hoffmann, G.F., Tonshoff, B. & Rafat, N. (2018). Endothelial progenitor cells accelerate endothelial regeneration in an in vitro model of Shigatoxin-2a-induced injury via soluble growth factors. Am. J. Physiol. Renal Physiol. 315, F861-F869. (doi: 10.1152/ajprenal.00633.2017)
  6. Youns, M., ElKhoely, A. & Kamel, R. (2018). The growth inhibitory effect of gambogic acid on pancreatic cancer cells. Naunyn-Schmiedebergs Arch. Pharmacol. 391, 551-560. (doi: 10.1007/s00210-018-1485-5)
  7. Goerke, S., Breitling, J., Zaiss, M., Windschuh, J., Kunz, P., Schuenke, P., Paech, D., Longo, D.L., Klika, K.D., Ladd, M.E. & Bachert, P. (2018). Dual-frequency irradiation CEST-MRI of endogenous bulk mobile proteins. NMR Biomed. 31, e3920. (doi: 10.1002/nbm.3920)
  8. Hoheisel, J.D. (2018). DNA-Microarray Technology. Bioanalytics (Lottspeich, E. & Engels, J.W., eds.), Elsevier, Heidelberg, 945-957.
  9. Pausch, T., Adolph, S., Felix, K., Bauer, A.S., Bergmann, F., Werner, J. & Hartwig, W. (2018). Antimicrobial peptide Human Neutrophil Peptide 1as a potential link between chronic inflammation and ductal adenocarcinoma of the pancreas. Pancreas 47, 561-567. (doi: 10.1097/MPA.0000000000001054)
  10. Kunz, P., Zinner, K., Mücke, N., Bartoschik, T., Muyldermans, S. & Hoheisel, J.D. (2018). The structural basis of nanobody unfolding reversibility and thermoresistance. Sci. Rep. 8, 7934. [PDF]
  11. Hufnagel, K., Lueong, S., Willhauck-Fleckenstein, M., Hotz-Wagenblatt, A., Miao, B., Bauer, A., Michel, A., Butt, J., Pawlita, M., Hoheisel, J.D. & Waterboer, T. (2018). Immunoprofiling of Chlamydia trachomatis using whole-proteome microarrays generated by on-chip in situ expression. Sci. Rep. 8, 7503. [PDF]
  12. García, T., Villablanca, A., Matthäus, F., Baeza, M., Tittarelli, A., Pereda, C., Lillo, F., Gleisner, M.A., Osorio, F., González, F.E., López, M.N., Hoheisel, J.D., Norgauer, J., Gebicke-Haerter, P. & Salazar-Onfray, F. (2018). Molecular signatures associated with tumor-specific immune response in melanoma patients treated with dendritic cell-based immunotherapy. Oncotarget 9, 17014-17027. (doi: 10.18632/oncotarget.24795)
  13. Throm, V.M., Männle, D., Giese, T., Bauer, A.S., Gaida, M.M., Kopitz, J., Bruckner, T., Plaschke, K., Grekova, S.P., Felix, K., Hackert, T., Giese, N.A. & Strobel, O. (2018). Endogenous CHRNA7-ligand SLURP1 as a potential tumor suppressor and anti-nicotinic factor in pancreatic cancer. Oncotarget 9, 11734-11751. (doi: 10.18632/oncotarget.24312)
  14. Bauer, A.S., Nazarov, P.V., Giese, N.A., Beghelli, S., Heller, A., Greenhalf, W., Costello, E., Muller, A., Bier, M., Strobel, O., Hackert, T., Vallar, L., Scarpa, A., Büchler, M.W., Neoptolemos, J.P., Kreis, S. & Hoheisel, J.D. (2018). Transcriptional variations in the wider peritumoral tissue environment of pancreatic cancer. Int. J. Cancer 142, 1010-1021. [PDF]
  15. Adam, S., Knapp-Mohammady, M., Yi, J. & Bondar, A.-N. (2018). Revised CHARMM force field parameters for iron-containing cofactors of photosystem II. J. Comp. Chem. 39, 7-20. [PDF]

2017

  1. Kaistha, B.P., Krattenmacher, A., Fredebohm, J., Schmidt, H., Behrens, D., Widder, M., Hackert, T., Strobel, O., Hoheisel, J.D., Gress, T.M. & Buchholz, M. (2017). The deubiquitinating enzyme USP5 promotes pancreatic cancer via modulating cell cycle regulators. Oncotarget 8, 66215-66225. [PDF]
  2. Persson, H., Sokilde, R., Pirona, A.C. & Rovira, C. (2017). Preparation of highly multiplexed small RNA sequencing libraries. Biotechniques 63, 57-64. (doi: 10.2144/000114574)
  3. Persson, H., Sokilde, R., Hakkinen, J., Pirona, A.C., Vallon-Christersson, J., Kvist, A., Mertens, F., Borg, A., Mitelman, F., Hoglund, M. & Rovira, C. (2017). Frequent miRNA-convergent fusion gene events in breast cancer. Nature Comm. 8, 788. (doi: 10.1038/s41467-017-01176-1)
  4. Kunz, P., Flock, T., Soler, N., Zaiss, M., Vincke, C., Sterckx, Y., Kastelic, D., Muyldermans, S. & Hoheisel, J.D. (2017). Exploiting sequence and stability information for directing nanobody stability engineering. BBA-Gen. Subjects 1861, 2196-2205. [PDF]
  5. Chakraborty, C., Fadda, A., Erben, E., Lueong, S., Hoheisel, J.D., Mugo, E. & Clayton, C. (2017). Interactions of CAF1-NOT complex components from Trypanosoma brucei. F1000Research6, 858. [PDF]
  6. Helwa, R., Heller, A., Knappskog, S. & Bauer, A.S. (2017). Tumor cells interact with red blood cells via galectin-4 – a short report. Cell. Oncol. 40, 401-409.
  7. Mustafa, S.A., Pan, L., Marzoq, A., Fawaz, M., Sander, L., Rückert, F., Schrenk, A., Hartl, C., Uhler, R., Yildirim, A., Strobel, O., Hackert, T., Giese, N., Büchler, M.W., Hoheisel, J.D. & Alhamdani, M.S.S. (2017). Comparison of the tumour cell secretome and patient sera for an accurate serum-based diagnosis of pancreatic ductal adenocarcinoma. Oncotarget 8, 11963-11976. [PDF]
  8. Syafrizayanti, Lueong, S.S., Di, C., Schäfer, J.V., Plückthun, A. & Hoheisel, J.D. (2017). Personalised proteome analysis by means of protein microarrays made from individual patient samples. Sci. Rep. 7, 39756. [PDF]

2016

  1. Jandaghi, P., Najafabadi, H.S., Bauer, A.S., Papadakis, A.I., Fassan, M., Hall, A., Monast, A., von Knebel Doeberitz, M., Neoptolemos, J.P., Costello, E., Greenhalf, W., Scarpa, A., Sipos, B., Auld, D., Lathrop, M., Park, M., Büchler, M.W., Strobel, O., Hackert, T., Giese, N.A., Zogopoulos, G., Sangwan, V., Huang, S., Riazalhosseini, Y. & Hoheisel, J.D. (2016). Dopamine receptor D2 is critical for pancreatic ductal adenocarcinoma and promises pharmacological therapy by already established antagonists. Gastroenterology 151, 1218-1231. [PDF]
  2. Dror, S., Sander, L., Schwartz, H., Sheinboim, D., Barzilai, A., Dishon, Y., Apcher, S., Golan, T., Greenberger, S., Barshack, I., Malcov, H., Zilberberg, A., Levin, L., Nessling, M., Friedmann, Y., Igras, V., Barzilay, O., Vaknine, H., Brener, R., Zinger, A., Schroeder, A., Gonen, P., Khaled, M., Erez, N., Hoheisel, J.D. & Levy, C. (2016). Melanoma miRNA trafficking triggers the tumor primary niche formation. Nature Cell Biol. 18, 1006-1017. [PDF]
  3. Pan, Y., Shen, N, Jung-Klawitter, S., Betzen, C., Hoffmann, G.F., Hoheisel, J.D. & Blau, N. (2016). CRISPR RNA-guided FokI nucleases repair a PAH variant in a phenylketonuria model. Sci. Rep. 6, 35794. [PDF]
  4. Botla, S.K., Savant, S., Jandaghi, P., Bauer, A.S., Mücke,, O., Moskalev, E.A., Neoptolemos, J.P., Costello, E., Greenhalf, W., Scarpa, A., Gaida, M.M., Büchler, M.W., Strobel, O., Hackert, T., Giese, N.A., Augustin, H.G. & Hoheisel, J.D. (2016). Early epigenetic down-regulation of microRNA-192 expression promotes pancreatic cancer progression. Cancer Res. 76, 4149-4159. [PDF]
  5. Bakdash, G., Buschow, S.I., Gorris, M., Halilovic, A., Hato, S.V., Sköld, A.E., Schreibelt, G., Sittig, S.P., Torensma, R., Duiveman-de Boer, T., Schröder, C., Smits, E.L.J., Figdor, C.G. & de Vries, I.J.M. (2016). Expansion of a BDCA1+CD14+ myeloid cell population in melanoma patients may attenuate the efficacy of dendritic cell vaccines. Cancer Res. 76, 4332-4346. [PDF]
  6. Kamhieh-Milz J.,, Mustafa, S.A., Sterzer, V., Khorramshahi, O., Celik, H., Keski, S., Movassaghi, K., Hoheisel, J.D., Alhamdani, M.S.S. & Salama, A. (2016). Identification of 68 dynamic factors in the supernatant of platelet concentrates. J. Proteomics 150, 74-85. [PDF]
  7. Sill, M. Schröder, C., Shen, Y., Marzoq, A., Komel, R., Hoheisel, J.D., Nienhüser, H., Schmidt, T. & Kastelic, D. (2016). Protein profiling gastric cancer and neighboring control tissues using high-content antibody microarrays. Microarrays 5, 19. [PDF]
  8. Kibat, J., Schirrmann, T., Knape, M.J., Helmsing, S., Meier, D., Hust, M., Schröder, C., Bertinetti, D., Winter, G., Pardes, K., Funk, M., Vala, A., Giese, N., Herberg, F.W., Dübel, S. & Hoheisel, J.D. (2016). Utilisation of antibody microarrays for the selection of specific and informative antibodies from recombinant library binders of unknown quality. New Biotechnol. 33, 574-581. [PDF]
  9. Weidmann, J., Dimitrijević, E., Hoheisel, J.D. & Dawson, P.E. (2016). A Boc SPPS-compatible linker for the synthesis of peptide o-aminoanilides. Org. Lett. 18, 164-167. [PDF]
  10. Cheng, X., Kim, J.Y., Gafroory, S., Duvaci, T., Rafiee, R., Theobald, J., Alborzinia, H., Holenya, P., Fredebohm, J., Merz, K.-H., Mehrabi, A., Hafezi, M., Saffari, A., Eisenbrand, G., Hoheisel, J.D. & Wölfl, S. (2016). Methylisoindigo preferentially kills cancer stem cells by interfering cell metabolism via inhibition of LKB1 and activation of AMPK in PDACs. Mol. Oncol.10, 806-824. [PDF]
  11. Bal, G., Futschik, M.E., Hartl, D., Ringel, F., Kamhieh-Milz, J., Sterzer, V., Hoheisel, J.D., Alhamdani, M.S.S. & Salama, A. (2016). Identification of novel biomarkers in chronic autoimmune thrombocytopenia (ITP) by microarray-based serum protein profiling. Br. J. Haematology 4, 602-615. [PDF]
  12. Lueong, S., Merce, C., Fischer, B., Hoheisel, J.D. & Erben, E.D. (2016). Gene expression regulatory networks in Trypanosoma brucei; the role of the mRNA-binding proteome. Mol. Microbiol.100, 457-471. [PDF]
  13. Betzen, C., Plotniki, K., Fathalizadeh, F., Pappan, K., Fleming, T., Bielaszewska, M., Karch, H., Tönshoff, B. & Rafat, N. (2016). Shiga toxin-2a-induced endothelial injury in aemolytic uremic syndrome: a metabolomic analysis. J. Infect. Dis., 213, 1031-1040. [PDF]
  14. Helwa, R., Ramadan, M., Abdel-Wahab, A.-H.A., Knappskog, S. & Bauer, A.S. (2016). Promoter SNPs rs116896264 and rs73933062 form a distinct haplotype and are associated with galectin-4 overexpression in colorectal cancer. Mutagenesis 31, 401-408. [PDF]

2015

  1. Olea Jr., C., Weidmann, J., Dawson, P.E. & Joyce, G.F. (2015). An L-RNA aptamer that binds and inhibits RNase. Chem. Biol. 22, 1437-1441. [PDF]
  2. Nijaguna, M.B., Schröder, C., Patila, V., Hegdec, A.S., Chandramoulid, B.A., Arivazhagand, A., Santoshe, V., Hoheisel, J.D. & Somasundaram, K. (2015). Definition of a serum marker panel for glioblastoma discrimination and identification of Interleukin 1β in the microglial secretome as a novel mediator of endothelial cell survival induced by C-Reactive Protein. J. Proteomics 128, 251-261. [PDF]
  3. Mock, A., Warta, R., Geisenberger, C., Bischoff, R., Schulte, A., Lamszus, K., Stadler, V., Felgenhauer, T., Schichor, C., Schwartz, C., Matschke, J., Jungk, C., Ahmadi, R., Sahm, F., Capper, D., Glass, R., Tonn, J.-C., Westphal, M., von Deimling, A., Unterberg, A., Bermejo, J.L. & Herold-Mende, C. (2015). Printed peptide arrays identify prognostic TNC serumantibodies in glioblastoma patients. Oncotarget 6, 13579-13590. [PDF]
  4. Heller, A., Gaida, M.M., Giese, T., Scarpa, A., Keleg, S., Neoptolemos, J.P., Hackert, T., Strobel, O., Hoheisel, J.D., Giese, N.A. & Bauer, A.S. (2015). Stratification of pancreatic tissue samples for molecular studies: RNA-based cellular annotation procedure. Pancreatology 15, 423-431. (doi: 10.1016/j.pan.2015.05.480)
  5. Stoy, C., Sundaram, A., Garcia, M.R., Wang, X. Seibert, O., Zota, A., Wendler, S., Männle, D., Hinz, U., Sticht, C., Muciek, M., Gretz, N., Rose, A., Greiner, V., Hofmann, T., Bauer, A., Hoheisel, J.D., Berriel Diaz, M., Gaida, M.M., Werner, J., Schafmeier, T., Strobel, O. & Herzig, S. (2015). Transcriptional co-factor transducin beta-like (TBL) 1 acts as a checkpoint in pancreatic cancer malignancy. EMBO Mol. Med. 7, 1048-1062. (doi: 10.15252/emmm.201404837)
  6. Betzen, B., Alhamdani, M.S.S., Lueong, S., Schröder, C., Stang, A. & Hoheisel, J.D. (2015). Clinical proteomics; promises, challenges and limitations of affinity arrays. Proteomics Clin. Appl.9, 342-347. [PDF]
  7. Bradbury, A., Plückthun, A., Anderson, S., Arap, W., Baralle, F.E., Beck, A., Begley, G., Benet, L., Benhar, I., Blackshaw, S., Blow, N., Boeke, J., Borrebaeck, C., Burrone, O.E., Burton, D., Campbell, E., Carter, P., Cattaneo, A., Cesareni, G., Chakraborti, S., Chalmers, A.D., Chaput, J., Chasteen, L., Chester, K.A., Christ, D., Clark, M., Close, D., D'Angelo, S., Dimitrov, D., Dübel, S., Edwards, A., Ellington, A., Feldhaus, M., Ferrara, F., Freeman, N.L., Fuh, G., Gaiotto, T., Gatlin, C.L., Georgiou, G., Glanville, J., Gold, L., Gräslund, S., Griffiths, A.D., Haab, B., Hoheisel, J.D., Hornsby, M., Hudson, P., Hust, M., Huston, J.S., Kay, B., Kim, K.M., Kiss, C., Koide, S., Kossiakoff, A., LaBaer, J., Landegren, U., Lane, D., Larrick, J., Lee, S., Lefranc, M.-P., Liu, B., Lou, J., Lund-Johansen, F., Macor, P., Magee, M., Marasco, W., Marks, J., Mathias, S., McCafferty, J., Montelione, G., Neri, D., Nishimura, S.L., Not, T., Oprea, T., Pai, J.K., Parren, P., Pasqualini, R., Pavlik, P., Qiu, J., Quarmby, V., Reichert, J., Rimm, D., Santoro, C., Sblattero, D., Schirrmann, T., Scott, J., Sechi, S., Sidhu, S., Siegel, R., Sitia, R., Skerra, A., Soh, H., Song, B.D., Song, P., Staquicini, F.I., Stoevesandt, O., Taussig, M., Tawfik, D.F., Trimmer, J., Uhlen, M., Velappan, N., Waldman, H., Waldo, G.S., Ward, S., Weiner, M., Wells, J., Wittrup, D., Wu, A., Wu, H., Yoo, J.-S., Zhou, Y. (2015). Standardize antibodies used in research. Nature 518, 27-29. (doi: 10.1038/518027a)
  8. Moskalev, E.A., Jandaghi, P., Fallah, M., Manoocheri, M., Botla, S.K., Kolychev O.V., Nikitin, E.A., Bubnov, V.V., von Knebel Doeberitz, M., Strobel, O., Hackert, T., Büchler, M.W., Giese, N., Bauer, A., Muley, T., Warth, A., Schirmacher, P., Haller, F., Hoheisel, J.D. & Riazalhosseini, Y. (2015). GHSR DNA hypermethylation is a common epigenetic alteration of high diagnostic value in a broad spectrum of cancers. Oncotarget 6, 4418-4427. (doi: 10.18632/oncotarget.2759)
  9. Jandaghi, P., Hoheisel, J.D. & Riazalhosseini, Y. (2015). GHSR hypermethylation: a promising pan-cancer marker. Cell Cycle 14, 689-690. (doi: 10.1080/15384101.2015.1006051)
  10. Haller, F., Zhang, J.D., Moskalev, E.A., Braun, A., Otto, C., Geddert, H., Riazalhosseini, Y., Ward, A., Balwierz, A., Schäfer, I.-M., Cameron, S., Ghadimi, M., Agaimy, A., Fletcher, J.A., Hoheisel, J.D., Hartmann, A., Werner, M., Wiemann, S. & Sahin, Ö. (2014). Combined DNA methylation and gene expression profiling in gastrointestinal stromal tumors (GISTs) reveals hypomethylation of SPP1 as an independent prognostic factor. Int. J. Cancer 136, 1013-1023. (doi: 10.1002/ijc.29088)
  11. Simo, G, Lueong, S., Grebaut, P., Guny, G. & Hoheisel, J.D. (2015). Micro RNA expression profiles in peripheral blood cells of rats that were experimentally infected with Trypanosoma congolense and different Trypanosoma brucei subspecies. Microb. Infect. 17, 596-608. (doi: 10.1016/j.micinf.2015.03.004)
  12. Paizs, B. (2015). A divide-and-conquer approach to compute collision cross sections in the projection approximation method. Int. J. Mass. Spectrom. 378, 360-363. (doi: 10.1016/j.ijms.2014.10.005)
  13. Hernandez, O., Paizs, B., & Maître, P. (2015). Rearrangement chemistry of an ions probed by IR spectroscopy. Int. J. Mass. Spectrom. 377, 172-178. (doi: 10.1016/j.ijms.2014.08.008)
  14. Roth, P., Keller, A., Hoheisel, J.D., Codo, P., Bauer, A.S., Backes, C., Leidinger, P., Meese, E., Thiel, E., Korfel, A & Weller, M. (2014). Differentially regulated miRNAs as prognostic biomarkers in the blood of PCNSL patients. Eur. J. Cancer 51, 382-390. (doi: 10.1016/j.ejca.2014.10.028)

2014

  1. Keller, A., Leidinger, B., Vogel, B., Backes, C., ElSharawy, A., Galata, V., Müller,S., Marquart, S., Schrauder, M.G., Strick, R., Bauer, A., Wischhusen, J., Beier, M., Kohlhaas, J., Katus, H.A., Hoheisel, J.D., Franke, A., Meder, B. & Meese, E. (2014). miRNAs can be generally associated with human pathologies as exemplified for miR-144*. BMC Med. 12, 224. [PDF]
  2. Ricoult, S.G., Nezhad, A.S., Knapp-Mohammady, M., Kennedy, T.E. & Juncker, D. (2014). Humidified microcontact printing of proteins: universal patterning of proteins on both low and high energy surfaces. Langmuir 30, 12002–12010. [PDF]
  3. Hoheisel, J.D. (2014). Die Nutzung von Protein-Microarrays zur Personalisierten Proteomanalyse. labor&more 10/14, 10-13. [PDF]
  4. Wolf, J., Müller-Decker, K., Flechtenmacher, C., Zhang, F., Shahmoradgoli, M., Mills, G.B., Hoheisel, J.D. & Böttcher, M. (2014). SALL1 acts as tumor suppressor and regulator of CDH1. Oncogene 33, 4273-4278. [PDF]
  5. Keleg, S., Titov, A., Heller, A., Giese, T., Tjaden, C., Ahmad, S.S., Gaida, M.M., Bauer, A.S., Werner, J. & Giese, N.A. (2014). Chondroitin sulfate proteoglycan CSPG4 as a novel hypoxia-sensitive marker in pancreatic tumors. PLOS ONE 9, e100178. [PDF]
  6. Liesz, A., Bauer, A., Hoheisel, J.D. & Veltkamp, R. (2014). Intracerebral Interleukin-10 injection modulates post-ischemic neuroinflammation: an experimental microarray study. Neuroscience Lett. 579, 18-23. [PDF]
  7. Erben, E., Lueong, S. Fadda, A., Hoheisel, J.D. & Clayton, C. (2014). A genome-wide tethering screen reveals novel potential post-transcriptional regulators in Trypanosoma brucei. PLOS Pathogens 10, e1004178. [PDF]
  8. Srinivasan, H., Allory, Y., Sill, M., Vordos, D., Alhamdani, M.S.S., Radvanyi, F., Hoheisel, J.D. & Schröder, D. (2014). Prediction of recurrence of non muscle-invasive bladder cancer by means of a protein signature identified by antibody microarray analyses. Proteomics 14, 1333-1342. [PDF]
  9. Syafrizayanti, Betzen, C., Hoheisel, J.D. & Kastelic, D. (2014). Methods for analysing and quantifying protein-protein interactions. Exp. Rev. Prot. 11, 107-120.
  10. Muda, K., Bertinetti, D., Gesellchen, F., Hermann, J.S., von Zweydorf, F., Geerlof, A., Jacob, A., Ueffing, M., Gloeckner, C.J. & Herberg, F.W. (2014). The Parkinson related LRRK2 mutation R1441C/G/H impairs PKA phosphorylation of LRRK2 and disrupts its interaction with 14-3-3. Proc. Natl. Acad. Sci. USA 111, E34-E43. [PDF]
  11. Böttcher, M., Lawson, A., Ladenburger, V., Fredebohm, J., Wolf, J., Hoheisel, J.D., Frezza, C. & Shlomi, T. (2014). High throughput synthetic lethality screen reveals a tumorigenic role of adenylate cyclase in fumarate hydratase-deficient cancer cells. BMC Genomics 15, 158. [PDF]
  12. Dutruel, C., Bergmann, F., Rooman, I., Zucknick, M., Weichenhan, D., Rachakonda, P.S., Bauer, A., Giese, N., Hong, C., Xie, H., Costello, J., Hoheisel, J.D., Kumar, R., Rehli, M., Schirmacher, P., Werner, J., Plass, C., Popanda, O. & Schmezer, P. (2014). Early epigenetic downregulation of WNK2 kinase during pancreatic ductal adenocarcinoma development. Oncogene 33, 3401-3410. [PDF]
  13. Hernandez, O., Pulay, P., Maître, P. & Paizs, B. (2014). Zundel-type H-bonding in biomolecular ions. J. Am. Soc. Mass Spectrom. 25, 1511-1514.
  14. Ragusa, M., Maugeri, M., Statello, L., Barbagallo, C., Passanisi, R., Alhamdani, M.S.S., Li Destri, G., Cappellani, A., Barbagallo, D., Scalia, M., Valadi, H., Hoheisel, J.D., Di Pietro, C. & Purrello, M. (2014). Variations in the miRNA and protein content between colorectal cancer cells and their exosomes following Cetuximab treatment; biomolecular and translational implications. Oncoscience 1, 132-157. [PDF]
  15. Märkle, F., Löffler, F.F., Schillo, S.,, Förtsch, T., Münster, B., Striffler, J., Schirwitz, C., Bischoff, F.R., Breitling, F. & Nesterov-Müller, A. (2014). High-density peptide arrays with combinatorial laser fusing. Adv. Mater. 26, 3730-3734.
  16. Milne R., La Vecchia, C., Van Steen, K., Hahn, S., Buchholz, M., Costello, E., Esposito, I., Hoheisel, J.D., Lange, B., Lopez-Bigas, N., Michalski, C.W., Real, F.X, Brand, A. & Malats, N. (2014). EU Pancreas - an integrated European platform for pancreas cancer research: from basic science to clinical and public health interventions for a rare disease. Public Health Genomics 16,305-312. [PDF]

2013

  1. Wolf, J., Dewi, D., Fredebohm, J., Müller-Decker, K., Flechtenmacher, C., Hoheisel, J.D., Böttcher, M. (2013). A mammosphere formation RNAi screen reveals that ATG4A promotes a breast cancer stem-like phenotype. Breast Cancer Res. 15, R109. [PDF]
  2. Lueong, S.S., Hoheisel, J.D. & Alhamdani, M.S.S. (2013). Protein microarrays as tools for functional proteomics: achievements, promises and challenges. J. Prot. Bioinf. 07, 004. [PDF]
  3. Marzoq, A.J., Giese, N., Hoheisel, J.D. & Alhamdani, M.S.S. (2013). Proteome variations in pancreatic stellate cells upon stimulation with pro-inflammatory factors. J. Biol. Chem. 288, 32517-32527. [PDF]
  4. Schröder, C., Srinivasan, H., Sill, M., Linseisen, J., Fellenberg, K., Becker, N., Nieters, A. & Hoheisel, J.D. (2013). Plasma protein analysis of patients with different B-cell lymphomas with high-content antibody microarrays. Proteomics Clin. Appl. 7, 802-812. [PDF]
  5. Fredebohm, J., Wolf, J., Hoheisel, J.D. & Böttcher, M. (2013). Depletion of RAD17 sensitizes pancreatic cancer cells to gemcitabine. J. Cell Sci. 126, 3380-3389. [PDF]
  6. Rodenburg, W., Kutschmann, S., Pennings, J., Kifle, S. & Schröder, C. (2013). Antikörper-Mikroarrays: Vergleich von Blutproteinen immundefizienter und -kompetenter Mäuse. BIOspektrum 19, 748-751. [PDF]
  7. Wolf, R.J., Hilger, R.A., Werner, J., Hoheisel, J.D. & Holtrup, F. (2013). In vivo activity and pharmacokinetics on nemorosone on pancreatic cancer xenografts. PLoS ONE 8, e74555. [PDF]
  8. Lueong, S., Simo, G., Jamonneau, V., Bucheton, B., Hoheisel, J.D. & Clayton, C. (2013). The miRNA and mRNA signatures of peripheral blood cells in humans infected with Trypanosoma brucei gambiense. PLoS ONE 8, e67312. [PDF]
  9. Rachakonda, P.S., Bauer, A.S., Xie, H., Campa, D., Rizzato, C., Canzian, F., Beghelli, S., Greenhalf, W., Costello, E., Schanne, M. Heller, A., Scarpa, A., Neoptolemos, J.P., Werner, J., Büchler, M., Hoheisel, J.D., Hemminki, K., Giese, N. & Kumar, R. (2013). Somatic mutations in exocrine pancreatic tumors: association with patient survival. PLoS ONE 8, e60870. [PDF]
  10. Rizzato, C., Campa, D., Pezzilli, R., Soucek, P., Greenhalf, W.,Capurso, G., Talar-Wojnarowska, R., Heller, A.,Jamroziak, K., Khaw, K.-T., Key, T.J., Bambi, F., Landi, S., Vodickova, L., Büchler, M.W., Bugert, P., Vodicka, P., Neoptolemos, J.P., Werner, J., Hoheisel, J.D., Bauer, A.S., Giese, N. & Canzian, F. (2013). ABO blood groups and pancreatic cancer risk and survival: results from the PANcreatic Disease ReseArch (PANDoRA) consortium. Oncol. Reports 29, 1637-1644. [PDF]
  11. Shahmoradgoli, M., Riazalhosseini, Y., Haag, D., Becker, N., Hovestadt, V., Heck, S., Sinn, H.P., Schneeweiss, A., Mannherz, O., Sahin, Ö. & Lichter, P. (2013). Protein phosphatase 1, regulatory subunit 15B is a survival factor for ER alpha-positive breast cancer. Int. J. Cancer 132, 2714-2719. [PDF]
  12. Patenge, N., Pappesch, R., Krawack, F., Walda, C., Abu Mraheil, M., Jacob, A., Hain, T., & Kreikemeyer, B. (2013). Inhibition of growth and gene expression by PNA-peptide conjugates in Streptococcus pyogenes. Mol. Ther. Nucleic Acids 2, e132. [PDF]
  13. Campa, D., Rizzato, C., Bauer, A.S., Werner, J., Capurso, G., Costello, E., Talar-Wojnarowska, R., Jamroziak, K., Pezzilli, R., Gazouli, M., Khaw, K.-T., Key, T.J., Bambi, F., Heller, A., Landi, L., Vodickova, L., Theodoropoulos, G., Bugert, P., Vodicka, P., Hoheisel, J.D., Neoptolemos, J.P., Soucek, P., Büchler, M.W., Giese, N. & Canzian, F. (2013). Lack of replication of seven pancreatic cancer susceptibility loci identified in two Asian populations. Cancer Epidemiol. Biomarkers Prev. 22, 320-323. [PDF]
  14. Youns, M. & Fathy, G.M. (2013). Upregulation of extrinsic apoptotic pathway in curcumin-mediated antiproliferative effect on human pancreatic carcinogenesis. J. Cell. Biochem. 114, 2654-2665. [PDF]
  15. Löffler, F.F., Cheng, Y.-C., Muenster, B., Striffler, J., Liu, F.C., Bischoff, F.R., Doersam, E., Breitling, F. & Nesterov-Mueller, A. (2013). Printing peptide arrays with a complementary metal oxide semiconductor chip. Fundamentals and Applications of New Bioproduction Systems (Ed. Zeng, A.-P.), Advances in Biochemical Engineering/Biotechnology, Springer, 1-23.
  16. Hoheisel, J.D., Alhamdani, M.S.S. & Schröder, C. (2013). Affinity-based microarrays for proteomic analysis of cancer tissues. Proteomics Clin. Appl. 7, 8-16. [PDF]
  17. Haas, J., Frese, K.S., Park, Y.J., Keller, A., Vogel, B., Franke, J., Fischer, S., Weichenhan, D., Ehlermann, P., Bauer, A., Hassel, S., Nietsch, R., Dösch, A., Schultz, J.-H., Mereles, D., Hardt, S., Backs, J., Hoheisel, J.D., Plass, C., Katus, H.A., Meder, B. (2013). Alterations in cardiac DNA methylation suggest a role of epigenetic mechanisms in human dilated cardiomyopathy. EMBO Mol. Med. 5, 413-429. [PDF]
  18. Kim, E.-G., Seimiya, I., Chung, J., Hoheisel, J.D., Lim, I.K., Fujiki, H. & Park, S.C. (2013). The eleventh Korea-Japan-Germany joint symposium on cancer and ageing research. J. Cancer Res. Clin. Oncol. 139, 901-904. [PDF]
  19. Otero, E.P.U., Eliel, G.S.N., Fonseca, E. J. S., Hickman, J. M., Rodarte, R., Barretoc, E. & Jalkanen, K.J. (2013). Study of cancer cell lines with Fourier transform infrared (FTIR)/vibrational absorption (VA) spectroscopy. Curr. Phys. Chem. 3, 36-43. (doi: 10.2174/1877946811303010007)
  20. Schirwitz, C., Löffler, F., Felgenhauer, T., Stadler, V., Nesterov-Mueller, A., Dahint, R., Breitling, F. & Bischoff, F.R. (2013). Purification of high-complexity peptide microarrays by spatially resolved array transfer to gold-coated membranes. Adv. Materials 25, 1598-1602. (doi: 10.1002/adma.201203853)

2012

  1. Fredebohm, J., Böttcher, M., Eisen, C., Gaida, M.M., Heller, A., Keleg, S., Tost, J., Greulich-Bode, K., Hotz-Wagenblatt, A., Lathrop, M., Giese, N.A. & Hoheisel, J.D. (2012). Establishment and characterization of a highly tumourigenic and cancer stem cell enriched pancreatic cancer cell line as a well defined model system. PLoS ONE 7, e48503. [PDF]
  2. Botla, S.K., Moghaddas Gholami, A., Malekpour, M., Moskalev, E.A., Fallah, M., Aghajani, A., Bondar, I.S., Omranipour, R., Malekpour, F., Mohajeri, A, Jahangiri Babadi, A., Bubnov, V.V., Najmabadi, H., Hoheisel, J.D. & Riazalhosseini, Y. (2012). Diagnostic values of GHSR DNA methylation pattern in breast cancer. Breast Canc. Res. Treat. 135, 705-713. [PDF]
  3. Alhamdani, M.S.S., Youns, M., Buchholz, M., Gress, T.M., Beckers, M.C., Maréchal, D., Bauer, A.S., Schröder; C. & Hoheisel, J.D. (2012). Immunoassay-based proteome profiling of 24 pancreatic cancer cell lines. J. Proteomics 75, 3747-3759. [PDF]
  4. Moskalev, E.A., Luckert, K., Vorobjev, I.A., Mastitsky, S.E., Gladkikh, A.A., Stephan, A., Schrenk, M. Pötz, O., Joos, T.O. & Hoheisel, J.D. (2012). Concurrent epigenetic silencing of Wnt/β-catenin pathway inhibitor genes in B-cell chronic lymphocytic leukemia. BMC Cancer 12, 213. [PDF]
  5. Bauer, A., Keller, A., Costello-Goldring, E., Greenhalf, W., Bier, M., Borries, A., Beier, M., Neoptolemos, J.P., Büchler, M., Werner, J., Giese, N. & Hoheisel, J.D. (2012). Diagnosis of pancreatic cancer and chronic pancreatitis by measurement of microRNA abundance in blood and tissue. PLoS ONE 7, e34151. [PDF]
  6. Hoheisel, J.D. (2012). Antikörper zur Funktions-Analyse des Proteoms. Laborwelt 3, 16-17. [PDF]
  7. Hoheisel, J.D. (2012). Funktionelle Genom- und Proteomforschung in der Krebsforschung. Bioelektronische Diagnose- und Therapiesysteme; m3: microelectronics meets medicine (Wolf, B., eds.), Shaker Verlag, Aachen, 57-60.
  8. Hoheisel, J.D. (2012). DNA-Microarray Technologie. Bioanalytik (Lottspeich, E. & Engels, J.W., eds.), Elsevier, Heidelberg, 1047-1058.
  9. Shenfeld, M., Hachmo, Y., Frenkel, M., Dafni, N., Böttcher, M., Hoheisel, J.D., Dotan, I. & Canaani, D. (2012). ER-alpha-cDNA as part of a bicistronic transcript gives rise to high frequency, long term, receptor expressing cell clones. PLoS ONE 7, e31977. [PDF]
  10. Moskalev, E.A., Schubert, M. & Hoheisel, J.D. (2012). RNA-directed epigenomic reprogramming – an emerging principle of a more targeted cancer therapy? Genes Chrom. Cancer 51, 105-110. [PDF]
  11. Zang, H., Pelech, S., Ruijtenbeek, R., Felgenhauer, T., Bischoff, R., Breitling, F. & Stadler, V. (2012). Peptide Arrays. Microarrays in Diagnostics and Biomarker Development: Current and Future Applications (Ed. Jordan, B.), Springer, 81-112.
  12. Wagner, J., Löffler, F., Foertsch, T., Schirwitz, C., Fernandez, S., Hinkers, H., Arlinghaus, H.F., Painke, F., Koenig, K., Bischoff, F.R., Nesterov-Mueller, A., Breitling, F., Hausmann, M. & Lindenstruth, V. (2012). Image processing quality analysis for particle based peptide array production on a microchip. In Tech 2012. [PDF]
  13. Schirwitz, C., Löffler, F., Felgenhauer, T., Stadler, V., Breitling, F. & Bischoff, F.R. (2012). Sensing immune responses with customized peptide microarrays. Biointerphases 7, 47. [PDF]
  14. Löffler, F., Schirwitz, C., Wagner, J., König, K., Märkle, F., Torralba, G., Hausmann, M., Bischoff, F.R., Nesterov-Müller, A. & Breitling, F. (2012). Biomolecule arrays using functional combinatorial particle patterning on microchips. Advanced Funct. Mat. 22, 2503-2508.
  15. Bubnov, V., Moskalev, E., Petrovskiy, Y., Bauer, A., Hoheisel, J.D. & Zaporozhan, V. (2012). Hypermethylation of TUSC5 genes in breast cancer tissue. Exp. Oncol. 34, 370-372. [PDF]
  16. Wurst, M., Seliger, B., Jha, B.A., Klein, C., Queiroz, R. & Clayton, C. (2012). Expression of the RNA recognition motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei. Mol. Microbiol. 83, 1048-1063. [PDF]
  17. Ritari, J., Hultman, J., Fingerroos, R., Tarkkanen, J., Pullat, J., Paulin, L., Kivi, N., Auvinen, P. & Auvinen, E. (2012). Detection of human papillomaviruses by polymerase chain reaction and ligation reaction on universal microarray. PLoS ONE 7, e34211. [PDF]
  18. Simpkins, N.S., Holtrup, F., Rodeschini, V., Taylor, J.D. & Wolf, R. (2012). Comparison of the cytotoxic effects of enantiopure PPAPs, including nemorosone and clusianone. Bioorg Medicinal Chem. Lett. 22, 6144-6147.
  19. Wassermann, T.N., Boyarkin, O.V., Paizs, B. & Rizzo, T.R. (2012). Conformation-specific spectroscopy of peptide fragment ions in a low-temperature ion trap. J. Am. Soc. Mass Spectrom. 23, 1029-1045. [PDF]
  20. Bythell, Benjamin J., Hernandez, O., Steinmetz, V., Paizs, B. & Maitre, P. (2012). Tyrosine side-chain catalyzed proton transfer in the YG a(2) ion revealed by theory and IR spectroscopy in the 'fingerprint' and X-H (X = C, N, O) stretching regions. Int. J. Mass Spectrom. 316, 227-234.
  21. Bernier, M.C., Paizs, B. & Wysocki, V.H. (2012). Influence of a gamma amino acid on the structures and reactivity of peptide a(3) ions. Int. J. Mass Spectr. 316, 259-267.
  22. Paizs, B. & Mann, M. (2012). 23rd Sanibel Conference on Mass Spectrometry: From fragmentation mechanisms to sequencing: tandem mass spectrometry based peptide and protein identification. J. Am. Soc. Mass Spectrom. 23, 575-576. [PDF]
  23. Paizs, B., Bythell, B.J. & Maitre, P. (2012). Rearrangement Pathways of the a(4) Ion of Protonated YGGFL Characterized by IR Spectroscopy and Modeling. J. Am. Soc. Mass Spectrom. 23,664-675. [PDF]
  24. Moss, C.L., Chamot-Rooke, J., Nicol, E., Brown, J., Campuzano, I., Richardson, K., Williams, J.P., Bush, M.F., Bythell, B., Paizs, B. & Turecek, F. (2012). Assigning structures to gas-phase peptide cations and cation-radicals. An infrared multiphoton dissociation, ion mobility, electron transfer, and computational study of a histidine peptide ion. J. Phys. Chem. B 116, 3445-3456.
  25. Jalkanen, K.J., Olsen, K., Knapp-Mohammady, M. & Bohr, J. (2012). First principle structure for the close-packed and the 7/2 motifs of collagen. Europhysics Lett. 100, 28003, 1-4. [PDF]
  26. Otero, E.P.U., Eliel, G.S.N., Fonseca, E. J. S., Hickman, J. M., Rodarte, R., Barretoc, E. & Jalkanen, K.J. (2013). Study of cancer cell lines with Fourier transform infrared (FTIR)/vibrational absorption (VA) spectroscopy. Curr. Phys. Chem. 3, 36-43.
  27. Knapp-Mohammady, M. & March, N.H. (2012). Can liquid supercooling and glassy-like structure be invoked to interpret collective cell behaviour in the human body? Phys. Chem. Liq. 50, 137-151.
  28. March, N.H. & Knapp-Mohammady, M. (2012). The inhomogeneous electron liquid in the ligand estradiol compared and contrasted with that in estrone. Phys. Chem. Liq. 50, 271-277.

2011

  1. Keller, A., Leidinger, P., Bauer, A., ElSharawi, A., Haas, J., Backes, C., Wendschlag, A., Giese, N., Tjaden, C., Ott, K., Werner, J., Hackert, T., Ruprecht, K., Huwer, H., Huebers, J., Jacobs, G., Rosenstiel, P., Dommisch, H., Schäfer, A., Müller-Quernheim, J., Wullich, B., Keck, B., Graf, N., Reichrath, J., Vogel, B., Nebel, A., Jager, S.U., Staehler, P., Amarantos, I., Boisguerin, V., Staehler, C., Beier, M., Scheffler, M., Büchler, M.W., Wischhusen, J., Häusler, S.F.M., Dietl, J., Hofmann, S., Lenhof, H.P., Schreiber, S., Katus, H.A., Rottbauer, W., Meder, B., Hoheisel, J.D., Franke, A. & Meese, E. (2011). Towards discovering the blood-born miRNome of human diseases. Nature Meth. 8, 841-843. [PDF]
  2. Friedrich, A., Hoheisel, J.D., Knemeyer, J.-P. & Marmé, N. (2011). A universally applicable process for preparing stoichiometrically 1:1 labelled functional proteins. Proteomics 11, 3757-3760. [PDF]
  3. Rizzato, C., Campa, D., Giese, N.,Werner, J., Rachakonda, S.P., Kumar, R., Schanné, M., Greenhalf, W., Costello, E., Khaw, K.T., Key, T.J., Siddiq, A., Lorenzo-Bermejo, J., Burwinkel, B., Neoptolemos, J.P., Büchler, M.W., Hoheisel, J.D., Bauer, A. & Canzian, F. (2011). Pancreatic cancer susceptibility loci and their role in survival. PLoS ONE 6, e27921. [PDF]
  4. Dorer, D.E., Holtrup, F., Fellenberg, K., Engelhardt, E., Hoheisel, J.D. & Nettelbeck, D.M. (2011). Replication and virus-induced transcriptome of HadV-5 in normal host cells versus cancer cells – differences of relevance for adenoviral oncolysis. PloS ONE 6, e27934. [PDF]
  5. Moskalev, E.A., Zavgorodnij, M.G., Majorova, S.P., Vorobjev, I.A., Jandaghi, P., Bure, I.V. & Hoheisel, J.D. (2011). Correction of PCR-bias in quantitative DNA methylation studies by means of cubic polynomial regression. Nucleic Acids Res. 39, e77. [PDF]
  6. Mustafa, S.A., Hoheisel, J.D. & Alhamdani, M.S.S. (2011). Secretome profiling with antibody microarrays. Mol. Biosyst. 7, 1795-1801. [PDF]
  7. Yepes, D., Jacob, A., Dauber, M., Costina, V., Hofheinz, R., Neumaier, M. & Findeisen, P. (2011). Substrate optimization and clinical validation of reporter peptides for MS-based protease profiling in serum specimens: a new approach for diagnosis of malignant diseases. Int. J. Oncol. 39, 145-154. [PDF]
  8. de Souza Rocha Simonini, P., Riazalhosseini, Y. & Hoheisel, J.D. (2011). Eine kleine Ribonukleinsäure mit großer Wirkung bei hormonsensitiven Brusttumoren. Geburtsh. & Frauenheilk. 71, 878-879. [PDF]
  9. Nibret, E., Youns, M., Krauth-Siegel, R.L. & Wink, M. (2011). Biological activities of Xanthatin from Xanthium strumarium leaves. Phytother. Res. 25, 1883-1890. [PDF]
  10. Bondar, A.N., Knapp-Mohammady, M., Suhai, S., Fischer, S. & Smith, J.C. (2011). The ground-state properties of the retinal revisited: quantum mechanical and classical mechanical computations of retinal proteins. Theor. Chem. Acc. 130, 1169-1183. [PDF]
  11. March, N.H. & Knapp-Mohammady, M. (2011). The inhomogeneous electron liquid in the ligand estradiol compared and contrasted with that in estrone. Phys. Chem. Liq. 49, 259-269.
  12. Piva, J.A.A.C., Silva, J.L.R., Raniero, L., Jalkanen, K.J., Martin, A.A. & Bohr, H.G. (2011). Overview of the use of heory to understand infrared and Raman spectra and images of biomolecules: colorectal cancer as an example. Theor. Chem. Acc. 130, 1261-1273. [PDF]
  13. Schmidt, R., Jacak, J., Schirwitz, C., Stadler, V., Michel, G., Marmé, N., Schütz, G.J., Hoheisel, J.D. & Knemeyer, J.-P. (2011). Single-molecule detection on a protein-array assay platform for the exposure of a tuberculosis antigen. J. Proteome Res.10, 1316-1322. [PDF]
  14. Holtrup, F., Bauer, A., Fellenberg, K., Hilger, R.A., Wink, M. & Hoheisel, J.D. (2011). Nemorosone specifically inhibits growth of pancreatic cancer cells and induces apoptosis via activation of the unfolded protein response (UPR). Brit. J. Pharmacol. 162, 1045-1059. [PDF]
  15. Alhamdani, M.S. & Hoheisel, J.D. (2011). Antibody microarrays in proteome profiling. Molecular Analysis and Genome Discovery (Rapley, R & Harbron, S., eds.), Wiley, 219-243.
  16. Youns, M., Hoheisel, J.D. & Efferth, T. (2011). Therapeutic and diagnostic applications of nanoparticles. Curr. Drug Targets 12, 357-365.
  17. March, N.H. & Knapp-Mohammady, M. (2011). Molecular versus tissue liquids: an atomic length? Phys. Chem. Liq. 49, 830-834.
  18. March, N.H. & Knapp-Mohammady, M. (2011). Aqueous microdroplet encapsulation of normal or cancerous single cells. Phys. Chem. Liq. 49, 409-413.
  19. Torres Salazar, A., Hoheisel, J.D., Youns, M. & Wink, M. (2011). Anti-inflammatory and anti-cancer activities of essential oils and their biological constituents. Int. J. Clin. Pharmacol. Ther. 49, 93-95.
  20. Sinha, R.K., Erlekam, U., Bythell, B.J., Paizs, B. & Maitre, P. (2011). Diagnosing the protonation site of b (2) peptide fragment ions using IRMPD in the X-H (X = O, N, and C) stretching region. J. Am. Soc. Mass Spectrom. 22, 1645-1650. [PDF]
  21. Bleiholder, C., Suhai, S., Harrison, A.,G. & Paizs, B. (2011). Towards understanding the tandem mass spectra of protonated oligopeptides. 2: the proline effect in collision-induced dissociation of protonated Ala-Ala-Xxx-Pro-Ala (Xxx = Ala, Ser, Leu, Val, Phe, and Trp). J. Am. Soc. Mass Spectrom. 22, 1032-1039. [PDF]
  22. March, N.H. & Knapp-Mohammady, M. (2011). The inhomogeneous electron liquid in some bioinorganic assemblies studied by density functional methods. Phys. Chem. Liq. 49, 259-269.
  23. Youns, M., Bauer, A., Reichling, J., Fellenberg, K., Efferth, T. & Hoheisel, J.D. (2011). Gene expression profiling identifies novel key players involved in chemopreventive effect of NS-398 on pancreatic cancer cells. Eur. J. Pharmacol. 650, 170-177.
  24. Schröder, C., Alhamdani, M.S.S., Fellenberg, K., Bauer, A., Jacob, A. & Hoheisel, J.D. (2011). Robust protein profiling with complex antibody microarrays in a dual-colour mode. Proteinarray Technology (Korf, U., ed.), Humana/Springer, 203-221.

2010

  1. de Souza Rocha Simonini, P., Breiling, A., Gupta, N., Malekpour, M., Youns, M., Omranipour, R., Malekpour, F., Volinia, S., Croce, C.M., Najmabadi, H., Diederichs, S., Sahin, Ö., Mayer, D., Lyko, F., Hoheisel, J.D. & Riazalhosseini, Y. (2010). Epigenetically de-regulated microRNA-375 activates Estrogen Receptor alpha activity in breast cancer. Cancer Res. 70, 9175-9184. [PDF]
  2. Alhamdani, M.S., Schröder, C. & Hoheisel, J.D. (2010). Analysis conditions for proteomic profiling of mammalian tissue and cell extracts with antibody microarrays. Proteomics 10, 3203-3207. [PDF]
  3. Schröder, C., Jacob, A., Tonack, S., Radon, T., Sill, M., Zucknick, M., Rüffer, S., Costello, E., Neoptolemos, J., Crnogorac-Jurcevic, T., Bauer, A., Fellenberg, K. & Hoheisel, J.D. (2010). Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-specific antibodies. Mol. Cell. Prot. 9, 1271-1280. [PDF]
  4. Alhamdani, M.S.S., Schröder, C., Giese, N., Bauer, A. & Hoheisel, J.D. (2010). Single-step procedure for the isolation of proteins at near-native conditions from mammalian tissue for proteomic analysis on antibody microarrays. J. Prot. Res. 9, 963-971. [PDF]
  5. Schröder, C., Jacob, A., Rüffer, S., Fellenberg, K. & Hoheisel, J.D. (2010). Antibody microarrays for expression analysis. Antibody Engineering, Vol. 2 (Dübel, S., ed.), Springer Verlag, 429-445. [PDF]
  6. Sill, M., Schröder, C., Hoheisel, J.D., Benner, A. & Zucknick, M. (2010). Assessment and optimisation of normalisation methods for dual-colour antibody microarrays. BMC Bioinformatics 11,556. [PDF]
  7. Gloriam, D.E., Orchard, S., Bertinetti, D., Bjorling, E., Bongcam-Rudloff, E., Bourbeillon, J., Bradbury, A.R., de Daruvar, A., Dübel, S., Frank, R., Gibson, T.J., Haslam, N., Herberg, F.W., Hiltke, T., Hoheisel, J.D., Kerrien, S., Koegl, M., Konthur, Z., Korn, B., Landegren, U., van der Maarel, S., Montecchi-Palazzi, L., Palcy, S., Rodriguez, H., Schweinsberg, S., Sievert, V., Stoevesandt, O., Taussig, M.J., Uhlen, M., Wingren, C., Gold, L., Woollard, P., Sherman, D.J. & Hermjakob, H. (2010). A community standard for the representation of protein affinity reagents. Mol. Cell. Prot. 9, 1-10. [PDF]
  8. Helwa, R. & Hoheisel, J.D. (2010). Analysis of DNA-protein interactions; from nitrocellulose filter-binding assays to microarray studies. Anal. Bioanal. Chem. 398, 2551-2561. [PDF]
  9. Böttcher, M., Kischkel, F. & Hoheisel, J.D. (2010). High-definition DNA methylation profiles from breast and ovarian carcinoma cell lines with differing doxorubicin resistance. PloS ONE 5, e11002. [PDF]
  10. Bythell, B.J., Knapp-Mohammady, M., Paizs, B. & Harrison, A.G. (2010). Effect of the His residue on the cyclization of b ions. J. Am. Soc. Mass Spectrom. 21, 1352-1363. [PDF]
  11. Uhlmann, S., Zhang, J.D., Schwager, A., Mannsperger, H., Riazalhosseini, Y., Burmester, S., Ward, A., Korf, U., Wiemann, S. & Sahin, O. (2010). miR-200bc/429 cluster targets PLCc1 and differentially regulates proliferation and EGF-driven invasion than miR-200a/141 in breast cancer. Oncogene 29, 4297-4306.
  12. Khan, M.S., Haas, F.H., Samami, A.A., Gholami, A.M., Bauer, A., Fellenberg, K., Reichelt, M., Hänsch, R., Mendel, R.R., Meyer, A.J., Wirtz, M. & Hell R. (2010). Sulfite reductase defines a newly discovered bottleneck for assimilatory sulfate reduction and is essential for growth and development in Arabidopsis thaliana. Plant Cell 22, 1216-1231. [PDF]
  13. Mraheil, M.A., Billion,, A., Kuenne, C., Pischimarov, J., Kreikemeyer, B., Engelmann, S., Hartke, A., Giard, J.-C., Rupnik, M., Vorwerk, S., Beier, M., Retey, J., Hartsch, T., Jacob, A., Cemic, F., Hemberger, J., Chakraborty1, T. & Hain, T. (2010). Comparative genome-wide analysis of small RNAs of major Gram-positive pathogens: from identification to application. Microb. Biotechnol.3, 634-657. [PDF]
  14. Müller, P., Schmitt, E., Jacob, A., Hoheisel, J.D., Kaufmann, R., Cremer, C. & Hausmann, M. (2010). COMBO-FISH enables high precision localization microscopy as a prerequisite for nanostructure analysis of genome loci. Int. J. Mol. Sci. 11, 4094-4105. [PDF]
  15. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Toxicogenomics for the prediction of toxicity related to herbs from traditional chinese medicine. Planta Med. 76, 2019-2025. [PDF]
  16. Pinto, L., Efferth, T., Torres, A., Hoheisel, J.D. & Youns, M. (2010). Berberine selectively inhibits cell growth and mediates caspase-independent cell death in human pancreatic cancer cells.Planta Med. 76, 1155-1161.
  17. Mulyaningsih, S., Youns, M., El-Readi, M.Z., Ashour, M.L., Nibret, E., Sporer, F., Herrmann, F., Reichling, J. & Wink, M. (2010). Biological activity of the essential oil of Kadsura longipedunculata (Schisandraceae) and its major components. J. Pharm. Pharmacol. 62, 1037-1044.
  18. Hoheisel, J.D. (2010). Zellulären Übeltätern auf der Spur; Funktionelle Genom- und Proteomanalyse in der Krebsforschung. Labor & More 3.10, 29-32. [PDF]
  19. Keller, A., Lenhof, H.-P., Amarantos, I., Bauer, A., Giese, N., Hoheisel, J.D., Leidinger, P. & Meese, E. (2010). MicroRNA-Profile als vielversprechende Diagnosemethode. Laborwelt 1/10, 33.
  20. Moghaddas Gholami, A.M. & Fellenberg, K. (2010). Cross-species common regulatory network inference without requirement for prior gene affiliation. Bioinformatics 26, 1082-1090. [PDF]
  21. Böttcher, M. & Hoheisel, J.D. (2010). Pooled RNAi screens - technical and biological aspects. Curr. Genomics 11, 162-167.
  22. Böttcher, M., Fredebohm, J., Moghaddas Gholami, A., Hachmo, Y., Dotan, I., Canaani, D. & Hoheisel, J.D. (2010). Decoding pooled RNAi screens by means of barcode tiling arrays. BMC Genomics 11, 7. [PDF]
  23. Knapp-Mohammady, M. & March, N.H. (2010). Quantum-chemical study of the potential anti-cancer drug Ru-NAMI-A in complex with estrogen and the simulated VA and VCD spectra of estrogen, the Ru-NAMI-A drug, and possible/proposed estrogen-Ru-NAMI-A complexes. Theor. Chem. Acc. 125, 293-303. [PDF]
  24. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Applications of microarray technology in ethnomedicinal plant research. Curr. Adv. Ethnomed. Plants (Rios, J.L., ed.), 424-443.
  25. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Traditional Chinese medicine (TCM) for molecular targeted therapies of tumors. Curr. Drug Discov. Technol. 7, 37-45.
  26. Kramer, S., Queiroz, R., Ellis, L., Hoheisel, J.D., Clayton, C. & Carrington, M. (2010). The RNA helicase DHH1 is central to the correct expression of many developmentally regulated mRNAs in trypanosomes. J. Cell Sci. 123, 699-711. [PDF]
  27. Simo, G., Herder, S., Cuny, G. & Hoheisel, J.D. (2010). Identification of subspecies specific genes differentially expressed in procyclic forms of Trypanosoma brucei subspecies. Infect. Genet. Evol. 10, 229-237. [PDF]
  28. Soza-Ried, J., Hotz-Wagenblatt, A., Glatting, K.H., del Val, C., Fellenberg, K., Bode, H.R., Frank, U., Hoheisel, J.D. & Frohme, M. (2010). The transcriptome of the colonial marine hydroid Hydractinia echinata. FEBS J. 277, 197-209. [PDF]

2009

  1. Archer, S., Luu, V.-D., Queiroz, R., Brems, S. & Clayton, C. (2009). Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle. PLoS Pathogen 5, e1000565. [PDF]
  2. Hoheisel, J.D. (2009). Zurück in die Zukunft der Sequenzierung (Editorial). BIOforum 6, 3. [PDF]
  3. Youns, M., Efferth, T. & Hoheisel, J.D. (2009). Microarray analysis of gene expression in medicinal plant research. Drug Discov. Ther. 3, 200-207. [PDF]
  4. Queiroz, R., Benz, C., Fellenberg, K., Schindler, V., Hoheisel, J.D. & Clayton, C. (2009). Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons. BMC Genomics 10, 495. [PDF]
  5. Pfannschmidt, J., Bade, S., Hoheisel, J.D., Muley, T., Dienemann, H., Herpel, E. (2009). Identification of immunohistochemical prognostic markers for survival after resection of pulmonary metastases from colorectal carcinoma. Thorac. Cardiov. Surgeon 57, 403–408. [PDF]
  6. Alhamdani, M.S.S., Schröder, C. & Hoheisel, J.D. (2009). Oncoproteomic profiling with antibody microarrays. Genome Medicine 1, 68. [PDF]
  7. Ashour, M., El-readi, M., Youns, M., Mulyaningsih, S., Sporer, F., Efferth, T. & Wink, M. (2009). Chemical composition and biological activities of the essential oil obtained from Bupleurum marginatum (Apiaceae). J. Pharm. Pharmacol. 61, 1079-1087.
  8. Youns, M., Efferth, T., Reichling, J., Fellenberg, K., Bauer, A. & Hoheisel, J.D. (2009). Gene expression profiling identifies novel key players involved in the cytotoxic effect of Artesunate on pancreatic cancer cells. Biochem. Pharmacol. 78, 273-283. [PDF]
  9. Börner, A., Warnken, U., Schnölzer, M., von Hagen, J., Giese, N., Bauer, A. & Hoheisel, J.D. (2009). Subcellular protein extraction from human pancreatic cancer tissues. BioTechniques 46, 297-304. [PDF]
  10. Ketterer, K., Kong, B., Frank, D., Giese, N., Bauer, A., Hoheisel, J.D., Korc, M., Kleeff, J., Michalski, C. & Friess, H. (2009). Neuromedin U is overexpressed in pancreatic cancer and increases invasiveness via the hepatocyte growth factor c-Met pathway. Cancer Lett. 277, 72-81. [PDF]
  11. Bau, S., Schracke, N., Kränzle, M., Wu, H., Hoheisel, J.D., Beier, M. & Summerer, D. (2009). Targeted next-generation-sequencing by specific capture of multiple genomic loci using low-volume microfluidic DNA-arrays. Anal. Bioanal. Chem. 393, 171-175. [PDF]
  12. Wurst, M., Robles, A., Po, J., Luu, V.-D., Brems, S., Marentije, M., Stoitsova, S., Quijada, L., Hoheisel, J.D., Stewart, M., Hartmann, C. & Clayton, C. (2009). An RNAi screen of the RRM-domain proteins of Trypanosoma brucei. Mol. Biochem. Parasit. 163, 61-65. [PDF]
  13. Dannewitz, B., Tomakidi, P., Syagailo, Y., Kohl, A., Staehle, H.J., Eickholz, P., Komposch, G. & Steinberg, T. (2009). Elevation of collagen type I in fibroblast–keratinocyte cocultures emphasizes the decisive role of fibroblasts in the manifestation of the phenotype of cyclosporin A-induced gingival overgrowth. J. Period. Res. 44, 62-72. [PDF]
  14. Bauer, A., Kleeff, J., Bier, M., Wirtz, M., Kayed, H., Esposito, I., Korc, M., Hafner, M., Hoheisel, J.D. & Friess, H. (2009). Identification of malignancy factors by analysing cystic tumours of the pancreas. Pancreatology 9, 34-44. [PDF]

2008

  1. Riazalhosseini, Y. & Hoheisel, J.D. (2008). Do we use the appropriate controls for the identification of informative methylation markers for early cancer detection? Genome Biol. 9, 405. [PDF]
  2. Clayton, C., Schwede, A., Stewart, M., Robles, A., Benz, C., Po, J., Wurst, M., Queiroz, R. & Archer, S. (2008). Control of mRNA degradation in trypanosomes. Biochem Soc. Trans. 36, 520-521. [PDF]
  3. Beatriz Bermúdez, B., López, S., Pacheco, Y.M., Villar, J., Muriana, F.J.G., Hoheisel, J.H., Bauer, A. & Abia, R. (2008). The influence of postprandial triclyceride-rich lipoproteins on lipid-mediated gene expression in smooth muscle cells of the human coronary artery. Cardiovasc. Res. 79, 294-303. [PDF]
  4. Vorwerk, S., Ganter, K., Cheng, Y., Hoheisel, J.D., Stähler, P.F. & Beier, M. (2008). Microfluidic-based enzymatic on-chip labeling of miRNAs. New Biotechnol. 25, 142-149. [PDF]
  5. Selak, N., Bachrati, C.Z., Shevelev, I., Dietschy, T., Jacob, A., Hübscher, U., Hoheisel, J.D., Hickson, I.D. & Stagljar, I. (2008). The Bloom’s syndrome helicase (BLM) interacts physically and functionally with p12, the smallest subunit of human DNA polymerase delta. Nucleic Acids Res. 36, 5166-5179. [PDF]
  6. Pullat, J., Kusnezow, W., Jakson, K., Beier, M., Hoheisel, J.D. & Metspalu, A. (2008). Mutational analysis and SNP typing by an Arrayed Primer Extension (APEX) reaction on an in situ-synthesised 5'-3' oligonucleotide microarray. New Biotechnol. 25, 131-141. [PDF]
  7. Haas, F.H., Heeg, C., Queiroz, R., Bauer, A., Wirtz, M. & Hell, R. (2008). Mitochondrial serine acetyltransferase functions as a pacemaker of cysteine synthesis in plant cells. Plant Physiol. 148, 1055-1067. [PDF]
  8. Kramer, S., Queiroz, R., Ellis, L., Webb, H., Hoheisel, J.D., Clayton, C. & Carrington, M. (2008). Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2alpha phosphorylation at Thr169. J. Cell Sci. 121, 3002-3014. [PDF]
  9. Schanné, M. , Bodem, J., Gerhold-Ay, A., Jacob, A., Fellenberg, K., Kräusslich, H.-G. & Hoheisel, J.D. (2008). Genotypic resistance testing in HIV by Arrayed Primer Extension. Anal. Bioanal. Chem. 391, 1661-1669. [PDF]
  10. Litovkin, K.V., Ivanova, O.V., Bauer, A., Hoheisel, J.D., Bubnov, V.V. & Zaporozhan, V.N. (2008). Microarray study of gene expression in uterine leiomyoma. Exp. Oncol. 30, 106-111. [PDF]
  11. Hoheisel, J.D. (2008). Microarray-Technologie; funktionelle Analysen der genetischen Information. Praxis Naturwiss. Biol. 2/57, 6-8.
  12. Beier, V. & Hoheisel, J.D. (2008). MicroRNAs; small molecules with big impact in cancer. Bioforum Eur. 12/08, 2-3. [PDF]
  13. Friedrich, A., Müller, M., Nolte, O., Wolfrum, J., Sauer, M., Hoheisel, J.D., Knemeyer, J.P. & Marmé, N. (2008). Highly specific identification of single nucleic polymorphism in M. tuberculosis using smart probes and single-molecule fluorescence spectroscopy in combination with blocking oligonucleotides. Proc. SPIE. 6867, 68670N (8 pages).
  14. Marmé, N., Lee, H., Friedrich, A., Park, C.W., Fiore, J., Nesbitt, D.J. & Knemeyer, J.P. (2008). Suppressing nonspecific adsorption of proteins on the single-molecular level. Proc. SPIE 6862, 686212 (7 pages).

2007

  1. Marmé, N., Sauer, M., Wolfrum, J., Hoheisel, J.D. & Knemeyer, J.-P. (2007). Smart Probes – a novel class of self-quenching DNA probes. Res. Adv. Nucleic Acids Res. 1, 1-10.
  2. Schanné, M., Beier, M. & Hoheisel, J.D. (2007). Unravelling the epigenetic code. Science Inside 2, 52-53. [PDF]
  3. Schanné, M., Riazalhosseini, Y., Beier, V., Gröne, H.-J., Waha, A., Schuster, M., Stähler, P., Lyko, F. & Hoheisel, J.D. (2007). Ein Programm für jeden Zelltyp. GenomXPress 2/07, 35-37.
  4. Hartmann, C., Benz, C., Brems, S., Ellis, L., Luu, V.-D., Stewart, M., D'Orso, I., Busold, C., Fellenberg, K., Frasch, A.C.C., Carrington, M., Hoheisel, J.D. & Clayton, C.E. (2007). The small trypanosome RNA-binding proteins TbUBP1 und TbUBP2 influence expression of F-box protein mRNAs in bloodstream trypanosomes. Eucaryotic Cell 6, 1964-1978. [PDF]
  5. Staudt, T.M., Kräusslich, H.G., Marmé, N. & Knemeyer, J.P. (2007). Self-quenching peptide substrates for ultra-sensitive HIV-protease assays. Int. J. Environ. Anal. Chem. 87, 731-743.
  6. Bauer, A., Solinas-Toldo, S. & Hoheisel, J.D. (2007). Gendiagnostik; methodische Grundlagen. Grundlagen der Molekularen Medizin; 3. Auflage (Ganten, D. & Ruckpaul, K., eds.), Springer Verlag, 346-362.
  7. Moskalyov, E.A., Eprintsev, A.T. & Hoheisel, J.D. (2007). DNA methylation profiling in cancer: from single nucleotides towards the methylome. Molekulyarnaya Biologiya 41, 793-807. (in Russian) Mol. Biol. 41, 723-736. (in English) [PDF]
  8. Marmé, N. & Knemeyer, J.P. (2007). Sensitive bioanalytics: combining single-molecule spectroscopy with mono-labelled, self-quenching probes. Anal. Bioanal. Chem. 388, 1075-1085. [PDF]
  9. Pullat, J., Fleischer, R., Becker, N., Beier, M., Metspalu, A. & Hoheisel, J.D. (2007). Optimisation of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays: analysing variations in immune regulator genes of hay-fever samples. BMC Genomics 8, 282. [PDF]
  10. Kusumawidjaja, G., Kayed, H., Giese, N., Bauer, A., Erkan, M., Giese, T., Hoheisel, J.D., Friess, H. & Kleeff, J. (2007). Basic transcription factor 3 (BTF3) regulates transcription of tumor-associated genes in pancreatic cancer cells. Cancer Biol. Ther. 6, 367-376. [PDF]
  11. Loos, M., Bergmann, F., Bauer, A., Hoheisel, J.D., Esposito, I., Kleeff, J., Schirmacher, P., Büchler, M.W., Klöppel, G. & Friess, H. (2007). Solid type clear cell carcinoma of the pancreas: differential diagnosis of an unusual case and review of the literature. Virchows Arch. 450, 719-726. [PDF]
  12. Kusnezow, W., Banzon, V., Schröder, C., Schaal, R., Hoheisel, J.D., Rüffer, S., Luft, P., Duschl, A. & Syagailo, Y.V. (2007). Comparison of various labeling substances for antibody microarray based profiling of clinical specimens. Proteomics 7, 1786-1799. [PDF]
  13. Knemeyer, J.P. & Marmé, N. (2007). Recent patents on self-quenching DNA probes. Recent Pat. DNA Gene Seq. 1, 145-157. [PDF]
  14. Denninger, V., Figarella, K. Schönfeld, C., Brems, S., Busold, C., Lang, F., Hoheisel, J.D. & Duszenko, M. (2007). Troglitazone induces differentiation in Trypanaosoma brucei. Exp. Cell Res. 313, 1805-1819. [PDF]
  15. Marmé, N., Friedrich, A., Hoheisel, J.D. & Knemeyer, J.-P. (2007). Smart Probes for the highly sensitive identification of single nucleic polymorphism on the single molecular level. FEBS Lett.581, 1644-1648. [PDF]
  16. Jesnowski, R., Zubakov, D., Faissner, R., Ringel, J., Hoheisel, J.D., Lösel, R., Schnölzer; M. & Löhr, M. (2007). Genes and proteins differentially expressed during in vitro malignant transformation of bovine pancreatic duct cells. Neoplesia 9, 136-146. [PDF]
  17. Beier, V., Mund, C. & Hoheisel, J.D. (2007). Monitoring methylation changes in cancer. Adv. Biochem. Eng. Biotechnol. 104, Volume: Analytics of Protein-DNA Interactions (Seitz, H., Hrsg.), Springer Verlag, 1-11.
  18. Giordano, F.A., Hotz-Wagenblatt, A., Lauterborn, D., Appelt, J.U., Fellenberg, K., Nagy, K.Z., Zeller, W.J., Suhai, S., Fruehauf, S.& Laufs, S. (2007). New bioinformatic strategies to rapidly characterize retroviral integration sites of gene therapy vectors. Meth. Inform. Med. 46, 542-547.
  19. Friedrich, A., Habl, G., Sauer, M., Wolfrum, J., Hoheisel, J.D., Marmé, N. & Knemeyer, J.P. (2007). New hairpin-structured DNA probes: alternatives to classical molecular beacons. Proc. SPIE 6444, 64440M.
  20. Schliwka, J., Pullat, J., DeVilliers, E.-M., Hoheisel, J.D. & Beier, M. (2007). Mit der Geniom-Microarray Technologie HPV-Genotypen auf der Spur. Biospectrum 01.07, 52-53.
  21. Taussig, M.J., Stoevesandt, O., Borrebaeck, C., Bradbury, A., Cahill, D., Cambillau, C., de Daruvar, A., Dübel, S., Eichler, J., Frank, R., Gibson, T., Gloriam, D., Gold, L., Herberg, F., Hermjakob, H., Hoheisel, J.D., Joos, T., Kallioniemi, O., Koegl, M., Konthur, Z., Korn, B., Kremmer, E., Krobitsch, S., Landegren, U., van der Marel, S., McCafferty, J., Muyldermans, S., Nygren, P.A., Palcy, S., Plückthun, A., Polic, B., Przybylski, M., Saviranta, P., Sawyer, A., Sherman, D.J., Skerra, A., Templin, M., Ueffing, M. & Uhlén, M. (2007). ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome. Nature Meth. 4, 13-17. [PDF]
  22. Hauser, M., Horn, P., Tournu, H., Hauser, N.C., Hoheisel, J.D., Brown, A.J.P. & Dickinson, J.R. (2007). A transcriptome analysis of isoamyl alcohol-induced filamentation in yeast reveals a novel role for Gre2p as isovaleraldehyde reductase. FEMS Yeast Res. 7, 84-92. [PDF]
  23. Marmé, N., Knemeyer, J.P. & Hoheisel, J.D. (2007). Imaging of single molecules in living cells. Anal. Bioanal. Chem. 387, 37-40. [PDF]

2006

  1. Fellenberg, K., Busold, C., Witt, O., Bauer, A., Beckmann, B., Hauser, N.C., Frohme, M., Winter, S., Dippon, J. & Hoheisel, J.D. (2006). Systematic interpretation of microarray data using experiment annotations. BMC Genomics 7, 319. [PDF]
  2. Hauser, N.C., Martinez, R., Jacob, A., Rupp, S., Hoheisel, J.D. & Matysiak, S. (2006). Utilising the left-helical conformation of L-DNA for analysing different marker types on a single universal microarray platform. Nucleic Acids Res. 34, 5101-5111. [PDF]
  3. Luu, V.-D., Brems, S., Hoheisel, J.D., Burchmore, R., Guilbride, D.L. & Clayton, C.E. (2006). Functional analysis of Trypanosoma brucei PUF1. Mol. Biochem. Parasit. 150, 340-349.
  4. Gruegelsiepe, H., Brandt, O. & Hartmann, R.K. (2006). Antisense Inhibition of RNase P; mechanistic aspects and application to live bacteria. J. Biol. Chem. 281, 30613–30620. [PDF]
  5. Marmé, N., Friedrich, A., Müller, M., Nolte, O., Wolfrum, J., Hoheisel, J.D., Sauer, M. & Knemeyer, J.P. (2006). Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy. Nucleic Acids Res. 34, e90. [PDF]
  6. Kusnezow, W., Syagailo, Y.V., Rüffer, S., Baudenstiel, N., Gauer, C., Hoheisel, J.D., Wild, D.G. & Goychuk, I.(2006). Optimal design of microarray immunoassays to compensate for kinetic limitations – theory and experiment. Mol. Cell. Prot. 5, 1681-1696. [PDF]
  7. Angenendt, P., Kreutzberger, J., Glökler, J. & Hoheisel, J.D. (2006). Generation of high-density protein-microarrays by cell-free in situ expression of unpurified PCR products. Mol. Cell. Prot. 5, 1658-1666. [PDF]
  8. Schütz, S., Chemnitz, J., Spillner, C., Frohme, M., Hauber, J. & Kehlenbach; R.H. (2006). Stimulated expression of mRNAs in activated T cells depends on a functional CRM1 nuclear export pathway. J. Mol. Biol. 358, 997-1009. [PDF]
  9. Marmé, N., Friedrich, A., Denapaite, D., Hakenbeck, R. & Knemeyer, J.-P. (2006). Single nucleotide polymorphism analysis using different colored dye dimer probes. Chem. Phys. Lett. 428, 440–445. [PDF]
  10. Hoheisel, J.D. (2006). Microarrays; an overview. Encyclop. Genet. Genomics Proteomics Bioinf. (Dunn, M., Jorde, L., Little, P. & Subramaniam, S., eds.), Wiley-VHC, ISBN-10:0-470-84974-6.
  11. Altenhein, B., Becker, A., Busold, C., Beckmann, B., Hoheisel, J.D. & Technau, G.M. (2006). Expression profiling of glial genes during Drosophila embryogenesis. Develop. Biol. 296, 545-560. [PDF]
  12. Jacob, A., Brandt, O. & Hoheisel, J.D. (2006). PNA Chips. Encyclop. Ref. Genomics Proteomics Mol. Med. (Ganten, D. & Ruckpaul, K., eds.), 1422-1425. [PDF]
  13. Nolte, O., Müller, M., Häfner, B., Knemeyer, J.P., Stöhr, K., Wolfrum, J., Hakenbeck, R., Denapaite, D., Schwarz-Finsterle, J., Stein, S., Herten, D.P., Hausmann, M. & Sauer, M. (2006) Novel singly labeled probes for identification of micro-organisms, detection of antibiotic resistance genes and mutations, and tumor diagnosis (Smart Probes). Biophotonics: visions for a better health care (Popp, J., ed.), WILEY-VCH, Weinheim.
  14. Brandt, O., Feldner, J., Hellweg, S., Schröder, M., Stephan, A., Arlinghaus, H.F., Hoheisel, J.D. & Jacob, A. (2006). Development towards label and amplification-free genotyping of genomic DNA. Appl. Surface Sci. 252, 6935-6940.
  15. Hellweg, S., Jacob, A., Hoheisel, J.D., Grehl, T. & Arlinghaus, H.F. (2006). Mass spectrometric characterization of DNA microarrays as a function of primary ion species. Appl. Surface Sci. 252, 6742-6745. [PDF]
  16. Hoheisel, J.D. (2006). DNA-Microarray Technologie. Bioanalytik (Lottspeich, E. & Engels, J.W., eds.), Elsevier, Heidelberg, 967-978.
  17. Hoheisel, J.D. (2006). Microarray technology; beyond transcript profiling and genotype analysis. Nature Rev. Genet. 7, 200-210. [PDF]
  18. Reva, O.N., Weinel, C., Weinel, M., Böhm, K., Stjepandic, D., Hoheisel, J.D. & Tümmler, B. (2006). Functional genomics of stress response in Pseudomonas putida KT2440. J. Bacteriol. 188, 4079-4092. [PDF]
  19. Sobek, J., Bartscherer, K., Jacob, A., Hoheisel, J.D. & Angenendt, P. (2006). Microarray technology as a universal tool for high-throughput analysis of biological systems. Comb. Chem. High-Throughput Screening 9, 365-380. [PDF]
  20. Stähler, P., Beier, M., Gao, X. & Hoheisel, J.D. (2006). Another side of genomics: synthethic biology as a means for the exploitation of whole-genome sequence information. J. Biotechnol. 124, 206-212. [PDF]
  21. Kusnezow, W., Syagailo, Y.V., Goychuk, I., Hoheisel, J.D. & Wild, D.G. (2006). Antibody microarrays: the crucial impact of mass transport on assay kinetics and sensitivity. Expert Rev. Mol. Diagn. 6, 111-124. [PDF]
  22. Kusnezow, W., Syagailo, Y.V., Rüffer, S., Klenin, K., Sebald, W., Hoheisel, J.D., Gauer, C. & Goychuk, I. (2006). Kinetics of antigen binding to antibody microspots: strong limitation by mass transport to the surface. Proteomics 6, 794-803. [PDF]
  23. Syagailo, Y.V., Kusnezow, W. & Hoheisel, J.D. (2006). Microarray-based expression profiling; from technological basics to diagnostic perspectives. Apoptosis and Cancer Therapy (Debatin, K.M. & Fulda, S., eds.), Wiley-VHC, 60-85.
  24. Steinberg, T., Dannewitz, B., Tomakidi, P., Hoheisel, J.D., Mussig, E., Kohl, A. & Nees, M. (2006). Analysis of interleukon-1beta-modulated mRNA gene transcription in human gingival keratinocytes by epithelia-specific cDNA microarrays. J. Periodontal Res. 41, 426-446. [PDF]
  25. Möhrlen, F., Maniura, M., Plickert, G., Frohme, M. & Frank, U. (2006). Evolution of astacin-like metalloproteases in animals and their function in development. Evolut. Develop. 8, 223-231. [PDF].
  26. Mali, B., Soza Ried, J., Frohme, M. & Frank, U. (2006). Structural but not functional conservation of an immune molecules: a tachylectin-like gene in Hydractinia. Dev. Comp. Immunol. 30, 275-281. [PDF]
  27. Frohme, M. & Hoheisel, J.D. (2006). Representational difference analysis; a methodology to study differential gene expression. Cell Biology: A Laboratory Handbook. 3rd Ed. (Celis, J., ed.), Elsevier, 113-120.

2005

  1. Nees, M., Kusnezow, W. & Woodworth, C.D. (2005). Microarrays: small spots produce major advances in pharmacogenomics. Novel Anticancer Agents: Strategies for Discovery and Clinical Testing (Adej, A., Buolamwini, J.K., eds.), Elsevier Inc..
  2. Buchholz, M., Kestler, H.A., Bauer, A., Böck, W., Rau, B., Leder, G., Kratzer, W., Bommer, M., Adler, G., Hoheisel, J.D. & Gress, T.M. (2005). Specialized DNA arrays for the differentiation of pancreatic tumors: a solution for a common diagnostic dilemma. Clin. Cancer Res. 11, 8048-8054. [PDF]
  3. Klenin, K.V., Kusnezow, W. & Langowski, J. (2005). Kinetics of protein binding in solid-phase immunoassays: theory. J. Chem. Phys. 122, Art. No. 214715. [PDF]
  4. Rapp, B., Herrmann, D., Guber, A., Welle, A., Schild, D., Jacob, A., Dauber, M. & Hoheisel, J.D. (2005). Mikrotiterplatte mit integrierter funktionalisierter Filterstruktur. Proceed. Mikrosystemtechnik Kongress 2005 (ISBN 3-8007-2926-1), VDE Verlag GmbH, Berlin und Offenbach, 773-776.
  5. Kersten, B., Wanker, E.E., Hoheisel, J.D. & Angenendt, P. (2005). Multiplex approaches in protein microarray technology. Expert Rev. Proteomics 2, 499-510. [PDF]
  6. Marmé, N., Habl, G. & Knemeyer, J.-P. (2005). Aggregation behavior of the red-absorbing oxazine derivative MR 121: A new method for determination of pure dimer spectra. Chem. Phys. Lett.408, 221-225. [PDF]
  7. Habl, G. Böhm, H., Marmé, N. & Knemeyer, J.-P. (2005). A new assay for single nucleotide polymorphism analysis based on displacement reactions in PNA-DNA double helices. Int. J. Environ. Anal. Chem. 85, 613-623.
  8. Schäfer, G., Müller, M., Hafner, B., Habl, G., Molte, O., Marme, N., Knemeyer, J.-P. (2005). Self-quenching DNA probes based on aggregation of fluorescent dyes. Proc. SPIE 5704, 30.
  9. Staudt, T.M., Knemeyer, L., Kräusslich, H.-G., Knemeyer, J.-P., & Marme, N. (2005). Novel fluorescently labeled enzyme substrates for the sensitive detection of HIV-protease. Proc. SPIE 5704, 112.
  10. Busold, C., Winter, S., Hauser, N., Bauer, A., Dippon, J., Hoheisel, J.D. & Fellenberg, K. (2005). GO-annotations in correspondence analysis facilitate interpretation of microarray data. Bioinformatics 21, 2424-2429. [PDF]
  11. Mund, C., Beier, V., Bewerunge, P., Dahms, M., Lyko, F. & Hoheisel, J.D. (2005). Array-based analysis of genomic DNA methylation patterns of the tumour suppressor gene p16 promoter in colon carcinoma cell lines. Nucleic Acids Res. 33, e73. [PDF]
  12. Angenendt, P. (2005). Progress in protein and antibody microarray technology. Drug Discovery Today 10, 503-511. [PDF]
  13. Beier, V., Mund, C., Schanne, M., Lyko, F. & Hoheisel, J.D. (2005). Characterisation of genomic methylation patterns in tumours. Exocrine Pancreas Cancer (Gress, T.M., Neoptolemos, J.P., Lemoine, N.R. & Real, F.X., eds.), Solvay, 252-258. [PDF]
  14. Buchholz, M., Kestler, H.A., Bauer, A., Hoheisel, J.D. & Gress, T.M. (2005). Development of diagnostic arrays for the differential diagnosis of a pancreatic mass. Exocrine Pancreas Cancer(Gress, T.M., Neoptolemos, J.P., Lemoine, N.R. & Real, F.X., eds.), Solvay, 394-401. [PDF]
  15. Schanne, M., Bodem, J., Kräusslich, H.G., Jacob, A. & Hoheisel, J.D. (2005). Microarray-basierte Resistenzbestimmung in HIV. LaborMedizin & Diagnostik 01.05, 19.
  16. Kusnezow, W., Pulli, T., Syagailo, Y. & Hoheisel, J.D. (2005). Microarray immunoassay of complex specimens; problems and technological challenges. Handbook of Immunohistochemistry & In Situ Hybridisation of Human Carcinomas, Vol. 2 (Hayat, M.A., ed.), 23-35.
  17. Brems, S., Guilbruide, L., Gundlesdodjir-Planck, D., Busold, C., Luu, V.-D., Schanne, M., Hoheisel, J.D. & Clayton, C. (2005). The transcriptomes of Trypanosoma brucei Lister 427 and TREU927 bloodstrem and procyclic trypomastigotes. Mol. Biochem. Parasit. 139, 163-172. [PDF]
  18. Beier, M. & Hoheisel, J.D. (2005). DNA-microarray preparation by light-controlled in situ synthesis. Curr. Protocols Nucleic Acid Chem., Unit 12.5. [PDF]

2004

  1. Guduric-Fuchs, J., Möhrlen, F., Frohme, M., Frank, U. (2004). A fragile X mental retardation-like gene in a cnidarian. Gene 343, 231–238. [PDF]
  2. Mali, B., Möhrlen, F., Frohme, M. & Frank, U. (2004). A putative double role of a chitinase in a cnidarian: pattern formation and immunity. Develop. Comp. Immunol. 28, 973–981. [PDF]
  3. Malanchi, I., Accardi, R., Diehl, F., Smet, A., Androphy, E., Hoheisel, J.D. & Tommasino, M. (2004). Human papillomavirus type 16 E6 promotes retinoblastoma protein phosphorylation and cell cycle progression. J. Virol. 78, 13769-13778. [PDF]
  4. Bey, M., Stüber, K., Fellenberg, K., Schwarz-Sommer, Z., Sommer, H., Saedler, H. & Zachgo, S. (2004). Characterization of Antirrhinum petal development and identification of target genes of the class B MADS-box Gene DEFICIENS. Plant Cell 16, 3197-3215.
  5. Brandt, O. & Hoheisel, J.D. (2004). Peptide nucleic acids on microarrays and other biosensors. Trends Biotechnol. 22, 617-622. [PDF]
  6. Beier, M. & Hoheisel, J.D. (2004). Synthesis of 3’-O-NPPOC-protected 5’-O-phosphoramidites. Curr. Protocols Nucleic Acid Chem., Unit 12.3.
  7. Beier, M. & Hoheisel, J.D. (2004). Derivatization of solid supports. Curr. Protocols Nucleic Acid Chem., Unit 12.4.
  8. Brandt, R., Grützmann, R., Bauer, A., Jesnowski, R., Ringel, J., Löhr, M., Pilarsky, C. & Hoheisel, J.D. (2004). DNA-microarray analysis of pancreatic malignancies. Pancreatology 4, 587-597. [PDF]
  9. Brors, B. & Fellenberg, K. (2004). Bioinformatik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 409-440.
  10. Frohme, M. & Wiemann, S. (2004). Funktionelle Genomik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 339-384.
  11. Frohme, M. & Wiemann, S. (2004). Genomik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 287-338.
  12. Arlinghaus, H.F., Schröder, M., Feldner, J.C., Brandt, O., Hoheisel, J.D. & Lipinsky, D. (2004). Development of PNA microarrays for gene diagnostics with TOF-SIMS. Appl. Surface Sci. 231–232, 392–396. [PDF]
  13. Jacob, A., Brandt, O., Stephan, A. & Hoheisel, J.D. (2004). PNA Microarrays. Methods in Molecular Biology (Niemeyer, C., ed.), Humana Press, Totowa, 283-294.
  14. Beier, V., Bauer, A., Baum, M. & Hoheisel, J.D. (2004). Fluorescent sample labelling for DNA-microarray analyses. Methods in Molecular Biology (Niemeyer, C., ed.), Humana Press, Totowa, 127-136. [PDF]
  15. Hollich, V., Johnson, E., Furlon, E.E., Beckmann, B., Celinker, S. & Hoheisel, J.D. (2004). Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource. Biotechniques 37, 282-284. [PDF]
  16. Kusnezow, W., Pulli, T., Witt, O. & Hoheisel, J.D. (2004). Solid support for protein microarrays and related devices. Protein Microarrays (Schena, M., Hrsg.), Jones and Bartlett, Sudbury, MA, 247-284.
  17. Fleischer, R., Frohme, M. & Hoheisel, J.D. (2004) Komplexe Microarrays in Krebsforschung und -diagnose. BIOspektrum 04/04, 434-436. [PDF]
  18. Hagen, I., Ecker, M., Lagorce, A., Francois, J.M., Sestak, S., Rachel., R., Grossmann, G., Hauser, N.C., Hoheisel, J.D., Tanner, W. & Strahl, S. (2004). Sed1p and Srl1p are required to compensate for cell wall instability in Saccharomyces cerevisiae mutants defective in multiple GPI-anchored mannoproteins. Mol. Microbiol. 52, 1413-1425. [PDF]
  19. Esposito, I., Bauer, A., Hoheisel, J.D., Kleeff, J., Friess, H., Büchler, M.W., Bergmann, F., Rieker, R.J., Otto, H.F., Klöppel, G., & Penzel, R. (2004). Microcystic tubulopapillary carcinoma of the pancreas: a new tumor entity. Virchows Arch. 444, 447-453. [PDF]
  20. Beier, V. & Hoheisel, J.D. (2004). Charakterisierung von DNA-Methylierungsmustern mit Hilfe von Oligonukleotid-Microarrays. BIOforum 05/04, 31-33. [PDF]
  21. Boutros, M., Kiger, A.A., Armknecht, S., Kerr, K., Hild, M., Koch, B., Haas, S.A., Beckmann, B., Vingron, M., Sauer, F., Hoheisel, J.D., Paro, R. and Perrimon, N. (2004). Genome-wide RNAi analysis of growth and viability in Drosophila cells. Science 303, 382-385. [PDF]

2003

  1. Beckmann, B., Hild, M., Haas, S.A., Koch, B., Solovjev, V., Busold, C., Fellenberg, K, Boutros, M., Vingron, M., Sauer, F., Hoheisel, J.D. & Paro, R. (2003). An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome. Genome Biol. 5, R3. [PDF]
  2. Yuan, L., An, H.X., Deng, X.L.& Li, Z.Y. (2003). Regulation of leptin on insulin secretion and sulfonulurea receptor 1 transcription level in isolated rats pancreatic islets. Chinese Med. J. 116, 868-872.
  3. Yuan, L., An, H.X., Deng, X.L., Chen, L.L. & Li, Z.Y. (2003). Rosiglitazone reverses insulin secretion altered by chronic exposure to free fatty acid via IRS-2-associated phosphatidylinositol 3-kinase pathway. Acta Pharmacol. Sinica 24, 429-434.
  4. Parker, N.B., Yang, X.D., Hanke, J., Mason, K.A., Schowen, R.L., Borchardt, R.T. & Yin, D.H. (2003). Trypanosoma cruzi: molecular cloning and characterization of the S-adenosylhomocysteine hydrolase. Exp. Parasitol. 105, 149-158.
  5. Hoheisel, J.D. (2003). DNA-Microarrays in der Routine. Forschung & Diagnostik 1, 34-35. [PDF]
  6. Bauer, A., Beckmann, B., Busold, C., Brandt, O., Kusnezow, W., Pullat, J., Aign, V., Fellenberg, K., Fleischer, R., Jacob, A., Frohme, M. & Hoheisel, J.D. (2003). Use of complex DNA- and antibody-microarrays as tools in functional analyses. Comp. Funct. Genom. 4, 520-524. [PDF]
  7. Aign, V. & Hoheisel, J.D. (2003). Analysis of nutrient-dependent transcript variations in Neurospora crassa. Fungal Genet. Biol. 40, 225-233. [PDF]
  8. Jacob, A., Brandt, O., Würtz, S., Stephan, A., Schnölzer, M. & Hoheisel, J.D. (2003). Production of PNA-arrays for nucleic acid detection. Peptide Nucleic Acids; Protocols and Applications(Nielsen, P.E., ed.), Horizon Bioscience, Wymondham, 261-279. [PDF]
  9. Brandt, O., Feldner, J., Stephan, A., Schröder, M., Schnölzer, M. Arlinghaus, H.F., Hoheisel, J.D. & Jacob, A. (2003). PNA-microarrays for hybridisation of unlabelled DNA-samples. Nucleic Acids Res. 31, e119. [PDF]
  10. Becerra, M., Lombardía, L.J., González-Siso, M.I., Rodriguez-Belmonte, E., Hauser, N.J., & Cerdán, M.E. (2003). Genome-wide analysis of the yeast transcriptome upon heat and cold shock. Comp. Funct. Genom. 4, 366-375. [PDF]
  11. Zubakov, D., Hoheisel, J.D., Kluxen, F.-W., Brändle, M., Ehring, T., Hentsch, B. & Frohme, M. (2003). Late ischemic preconditioning of the myocardium alters the expression of genes involved in inflammatory response. FEBS Lett. 547, 51-55. [PDF]
  12. Fellenberg, K., Vingron, M., Hauser, N.C. & Hoheisel, J.D. (2003). Correspondence analysis with microarray data. Perspectives in Gene Expression (Appasani, K., ed.), Eaton Publishing, Westborough, 307-343.
  13. Kusnezow, W. & Hoheisel, J.D. (2003). Solid Support for Microarray Immunoassays. J. Mol. Recognit.16, 165-176. [PDF]
  14. Hoheisel, J.D. (2003). Humangenetik leicht gemacht. Forum DKG 2/03, 61. [PDF]
  15. Löhr, M. & Hoheisel, J.D. (2003). DNA-Chip Technologie beim Pankreaskarzinom. Z. Gastroenterol. 41, 623-624.
  16. Lagorce, A., Hauser, N.C., Labourdette, D., Rodriguez, C., Jasson, S., Arroyo, J., Hoheisel, J.D. & Francois, J.-M. (2003). Genome-wide analysis of the response to cell wall damage in the yeast Saccharomyces cerevisiae. J. Biol. Chem. 278, 20345-20357. [PDF]
  17. Scheideler, M. & Hoheisel, J.D. (2003). Analyses de microréseaux d'ADN. Bioforum France 1/03, 24-27.
  18. Yin, Z., Wilson, S., Hauser, N.C., Tournu, H., Hoheisel, J.D. & Brown, A.J.P. (2003). Differential effects of high and low glucose signals upon global expression patterns in yeast. Mol. Microbiol.48, 713-724. [PDF]
  19. Mannhaupt, G., Montrone, C., Haase, D., Mewes, W., Aign, V., Hoheisel, J.D., Fartmann, B., Nyakatura, G., Kempken, F., Maier, J. and Schulte, U. (2003). What‘s in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence. Nucleic Acids Res. 31, 1944-1954. [PDF]
  20. Kusnezow, W., Jacob, A., Walijew, A., Diehl, F. & Hoheisel, J.D. (2003). Antibody microarrays: an evaluation of production parameters. Proteomics 3, 254-264. [PDF]
  21. Würtz, S., Hanke, J., Solinas-Toldo, S. & Hoheisel, J.D. (2003). Genomanalyse und Gendiagnostik. Grundlagen der molekularen Medizin, 2. Auflage (Ganten, D. & Ruckpaul, K., Eds.); Springer Verlag, 391-440.

2002

  1. Kusnezow, W. & Hoheisel, J.D. (2002). Antibody Microarrays: Promises and Problems. BioTechniques 33 (suppl.), 14-23. [PDF]
  2. Stjepandic, D., Weinel, C., Hilbert, H., Nelson, K.E., Tümmler, B. & Hoheisel, J.D. (2002). The genome structure of Pseudomonas putida; high-resolution mapping and microarray analysis.Environ. Microbiol. 4, 819-823. [PDF]
  3. Nelson, K.E., Weinel, C., Paulsen, I.T., Dodson, R.J., Hilbert, H., Martins Dos Santos, V., Fouts, D.E., Gill, S.R., Pop, M., Holmes, M., Brinkac, L., Beanan, M., DeBoys, R., Daugherty, S., Kolonay, J., Madupu, R., Nelson, W., White, O., Peterson, J., Khouri, H., Hance, I., Chris Lee, P., Holtzapple, E., Scanlan, D., Tran, K., Moazzez, A., Utterback, T., Rizzo, M., Lee, K., Kosack, D., Moestl, D., Wedler, H., Lauber, J., Stjepandic, D., Hoheisel, J.D., Straetz, M., Heim. S., Kiewitz, C., Eisen, J., Timmis, K.N., Düsterhoft, A., Tümmler, B., & Fraser, C.M. (2002). The complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol.4, 799-808. [PDF]
  4. Diehl, S., Diehl, F., El-Sayed, N.M., Clayton, C. & Hoheisel, J.D. (2002). Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray. Mol. Biochem. Parasit. 123, 115-123. [PDF]
  5. Scheideler, M. & Hoheisel, J.D. (2002). DNA-Microarray Analyses; benefits, promises and problems. Screening 5/02, 22-25. [PDF]
  6. Diehl, F., Beckmann, B., Kellner, N., Hauser, N.C., Diehl, S. & Hoheisel, J.D. (2002). Manufacturing DNA-microarrays from unpurified PCR-products. Nucleic Acids Res. 30, e79. [PDF]
  7. Lombardía, L.J., Becerra, M., Rodríguez-Belmonte, E., Hauser, N.C. & Cerdán, M.E. (2002) Genome-wide analysis of yeast transcription upon calcium shortage. Cell Calcium 32, 83-91. [PDF]
  8. Hauser, N.C., Fellenberg, K. & Rupp, S. (2002). How to Discover Pathogenic Mechanisms - New Evaluation Tools Towards Drug Discovery. Screening 3, 28-31.
  9. Hayes, A., Zhang, N., Wu, J., Butler, P.R., Hauser, N.C., Hoheisel, J.D., Lim, F.L., Sharrocks, A.D., Oliver, S.G. (2002) Hybridisation array technology coupled with chemostat culture: tools to interrogate gene expression in Saccharomyces cerevisiae. Methods 26, 281-290. [PDF]
  10. Brazma, A., Robinson, A., Vilo, J., Vingron, M., Hoheisel, J.D., Fellenberg, K. & Muilu, J. (2002). ArrayExpress; establishing a public repository for DNA array-based gene expression data. DNA-Chip Technology; Adv. Biochem. Engineering/Biotechnol. 77, 113-139.
  11. Hoheisel, J.D. (ed.) (2002). DNA-Chip Technology; Adv. Biochem. Engineering/Biotechnol. 77.
  12. Beckers, J., Hoheisel, J.D., Mewes, W., Vingron, M. & Hrabé de Angelis, M. (2002). Molecular phenotyping of mouse mutant resources by RNA expression profiling. Curr. Genomics 3, 121-129. [PDF]
  13. Frohme, M., Zolk, O., Maurer, A., Kluxen, F.-W., Hentsch, B., Zubakov, D., Hoheisel, J.D., Zucker, I.H., Pepe, S. & Eschenhagen, T. (2002). Cardiac ankyrin repeat protein, a negative regulator of cardiac gene expression, is augmented in human heart failure. Biochem. Biophys. Res. Commun. 293, 1377-1382. [PDF]
  14. Scheideler, M., Schlaich, N.L., Fellenberg, K., Beißbarth, T., Hauser, N., Vingron, M., Slusarenko, A.J. & Hoheisel, J.D. (2002). Monitoring the switch from housekeeping to pathogen defence metabolism in Arabidopsis thaliana. J. Biol. Chem. 277, 10555-10561. [PDF]
  15. Fellenberg, K., Hauser, N.C., Brors, B., Hoheisel, J.D. & Vingron, M. (2002). Microarray data warehouse allowing for the statistical analysis of experiment annotations. Bioinformatics 18, 423-433. [PDF]
  16. Becerra, M., Lombardía-Ferreira, L.J., Hauser, N.J., Hoheisel, J.D., Tizon, B. & Cerdán, M.E. (2002). The yeast transcriptome in aerobic and hypoxic conditions. Effects of HAP1 ROX1 ROX3 and SRB10 deletions. Mol. Microbiol. 43, 545-555. [PDF]
  17. Tauch, A., Homann, I., Mormann, S., Rüberg, S., Billaut, A., Bathe, B., Brand, S., Brockmann-Gretza, O., Rückert, C., Schischka, N., Wrenger, C., Hoheisel, J.D., Mockel, B., Huthmacher, K., Pfefferle, W., Pühler, A. & Kalinowski, J. (2002). Strategy to sequence the genome of Corynebacterium glutamicum ATCC 13032: use of a cosmid and a bacterial artificial chromosome library. J. Biotechnol. 95, 25-38. [PDF]
  18. Heber, S., Stoye, J., Frohme, M., Hoheisel, J.D. & Vingron, M. (2002). Resampling methods in physical mapping. Classification, Automation, and New Media; Studies in Classification, Data Analysis, and Knowledge Organization (Gaul, W. & Ritter, G., eds.), Springer Verlag, 437-444.
  19. Hoheisel, J.D. & Cahill, D. (Editorial) (2002). Proteomics and genomics; catching function in action. Curr Opin. Chem. Biol. 6, 11-12. [PDF]
  20. Beier, M. & Hoheisel, J.D. (2002). Use of NPE/NPEOC-protected 5'-phosphoramidites for inverse in situ synthesis of oligonucleotides on DNA-microarrays. J. Biotechnol. 94, 15-22. [PDF]

2001

  1. Hoheisel, J.D., Fellenberg, K., Brors, B., Diehl, F., Hauser, N.C. & Vingron, M. (2001). Transkriptionelle Untersuchungen auf DNS-Microarrays; Aspekte der Daten-Evaluation und Interpretation. BIOforum 12/01, 908-910.
  2. Petersohn, A., Brigulla, M., Haas, S., Hoheisel, J.D., Völker, U.& Hecker, M. (2001). Global analysis of the general stress response of Bacillus subtilis. J. Bacteriol. 183, 5617-5631. [PDF]
  3. Hoheisel, J.D., Diehl, F., Scheideler, M., Hauser, N., Aign, V., Matysiak, S. & Beier, M. (2001). Improving DNA-chip technology; chemical aspects. Novel Approaches in Biosensors and Rapid Diagnostic Assays (Liron, Z., Brohmberg, A. and Fisher, M., eds.), Kluwer Academic/Plenum Publishers, London, 165-172. [PDF]
  4. Matysiak, S., Reuthner, F. & Hoheisel, J.D. (2001). Automating parallel peptide-synthesis for the production of PNA-library arrays. BioTechniques 31, 896-904. [PDF]
  5. Fellenberg, K., Hauser, N.C., Brors, B., Neutzner, A., Hoheisel, J.D. & Vingron, M. (2001). Microarray data analysis by correspondence analysis. Proc. Natl. Acad. Sci. USA 98, 10781-10786. [PDF]
  6. Beier, M., Stephan, A. & Hoheisel, J.D. (2001). Synthesis of photolabile 5'-O-phosphoramidites for the production of microarrays of inversely oriented oligonucleotides. Hel. Chim. Acta 84, 2089-2095. [PDF]
  7. Hauser, N.C., Fellenberg, K., Rosario, G., Bastuck, S., Hoheisel, J.D. & Perez-Ortin, J.E. (2001). Whole genome analysis of a wine yeast strain. Comp. Funct. Genom. 2, 69-79. [PDF]
  8. Frohme, M., Camargo, A., Czink, C., Matsukuma, A.Y., Simpson, A.J.G., Hoheisel, J.D. & Verjovski-Almeida, S. (2001). Directed gap closure in large scale sequencing projects. Genome Res.11, 901-903. [PDF]
  9. Matysiak, S., Reuthner, F. & Hoheisel, J.D. (2001). New developments in Spot-synthesis of PNA-arrays. Innovation and Perspectives in Solid Phase Synthesis and Combinatorial Chemical Libraries (Epton, R., ed.), Mayflower Worldwide, Birmingham, 71-74.
  10. Hoheisel, J.D. & Conway, P.J. (eds.) (2001). Analytical Biotechnology. Curr Opin. Biotechnol. 12 (1). [PDF]
  11. Aign, V., Schulte, U. & Hoheisel, J.D. (2001). Hybridisation mapping of Neurospora crassa linkage groups II and V. Genetics 157, 1015-1020. [PDF]
  12. Diehl, F., Grahlmann, S., Beier, M. & Hoheisel, J.D. (2001). Manufacturing DNA-microarrays of high spot homogeneity and reduced background signal. Nucleic Acids Res. 29, e38. [PDF]
  13. Shen, H.H., Huang, A.-M., Hoheisel, J.D. & Tsai, S.-F. (2001). Identification and characterization of a SET/NAP protein encoded by a brain-specific gene, MB20. Genomics 71, 21–33. [PDF]
  14. Hoheisel, J.D. (2001). DNA in me that‘s not my DNA. Trends Biotechnol. 19, 155-156.

2000

  1. Beißbarth, T., Fellenberg, K., Brors, B., Arribas-Prat, R., Boer, J., Hauser, N.C., Scheideler, M., Hoheisel, J.D., Schütz, G., Poustka, A. & Vingron, M. (2000). Comparison and quality measures of DNA array hybridisation data. Bioinformatics16, 1014-1022. [PDF]
  2. Tümmler, B., Kiewitz, C., Weinel, C., Hoheisel, J.D., Düsterhöft, A., Hilbert, H., Moore, E., Strätz, M., Timmis, K.N., Nelson, K.E. & Fraser, C.M. (2000). Sequenzierung und Funktionsanalyse des Pseudomonas putida KT2440 Genoms: Methodik und Ressourcen. Biologische Sicherheit (Hartmann, A, ed.), Forschungszentrum Jülich (ISBN 3-89336-255-X), 251-257.
  3. Hoheisel, J.D. (2000). Das Humangenomprojekt. Humangenetisches Symposium 29, 11-16.
  4. Heber, S., Stoye, J., Frohme, M., Hoheisel, J.D. & Vingron, M. (2000). Contig selection in physical mapping. J. Comput. Biol. 7, 395-408. [PDF]
  5. Campbell, H.D., Fountain, S., Young, I.G., Weitz, S., Lichter, P. & Hoheisel, J.D. (2000). Fliih, the murine homologue of the Drosophila melanogaster flightless-I gene: genomic structure, chromosomal mapping and overlap with Llglh. DNA Sequence 11, 29-40.
  6. Heber, S., Hoheisel, J.D. & Vingron, M. (2000). Application of bootstrap-techniques to physical mapping. Genomics 69, 235-241. [PDF]
  7. Heber, S., Stoye, J., Hoheisel, J.D. & Vingron, M. (2000). Contig selection in physical mapping. Proc. Fourth Ann. Internat. Conf. Comput. Mol. Biol. (RECOMB 2000), 155-164.
  8. Hoheisel, J.D. (2000). Editorial on DNA-Chips. BIOforum12/00, 825. [PDF]
  9. Frohme, M., Camargo; A.A., Heber, S., Czink, C., Simpson, A.J.D., Hoheisel, J.D. & de Souza, A.P. (2000). Mapping analysis of the Xylella fastidiosa genome. Nucleic Acids Res. 28, 3100-3104. [PDF]
  10. Frohme, M., Scharm, B., Delius, H., Knecht, R. & Hoheisel, J.D. (2000). Use of representational difference analysis and cDNA-arrays for transcriptional profiling of tumour tissue. Ann. N.Y. Acad. Sci. 910, 85-104.
  11. Frohme, M., Hauser, N., Scheideler, M., Diehl, F., Beier, M., Würtz, S. & Hoheisel, J.D. (2000). Chips, arrays and other hybridisation based techniques for genome and transcriptome characterisation. Molecular Pathogenesis of Pancreatic Cancer (Gress, T., ed.), IOS Press, Amsterdam, 88-94.
  12. Hoheisel, J.D. & Vingron, M. (2000). Transcriptional profiling: is it worth the money? Res. Microbiol. 151, 113-119. [PDF]
  13. Simpson, A.J.G., et al., Hoheisel, J.D., et al. & Setubal, J.C. (2000). The genome sequence of the plant pathogen Xylella fastidiosa. Nature 406, 151-157. [PDF]
  14. Hoheisel, J.D. & Beier, M. (2000). DNS-Chips/elektronische Chips, grundverschieden und doch ähnlich. Dechema Tätigkeitsbericht.1999, 8-11.
  15. Hoheisel, J.D. (2000). ... and counting: DNA-microarrays. Proceedings Int. Conf. Genomics and Proteomics: Functional and Computational Aspects (Suhai, S., ed.), Plenum Publishing, New York, 1-3.
  16. Wambutt, R. et al., Hoheisel, J.D. et al. & Bevan, M. (2000). Progress in Arabidopsis genome sequencing and functional genomics. J. Biotechnol. 78, 281-292. [PDF]
  17. Beier, M. & Hoheisel, J.D. (2000). Production by quantitative photolithographic synthesis of individually quality-checked DNA microarrays. Nucleic Acids Res. 28, e11. [PDF]
  18. Beier, M., Matysiak, S., Hauser, N., Scheideler, M., Würtz, S., Fellenberg, K., Vingron, M. & Hoheisel, J.D. (2000). DNA microchips; transcriptional profiling and beyond. Chimia 54, 29-30.

1999

  1. Hanke, J. & Hoheisel, J.D. (1999). Construction and screening of cosmid libraries. The Nucleic Acids Protocols Handbook - Methods in Molecular Biology (Rapley, R., ed.), Humana Press, Totowa, 405-414.
  2. The European Union Arabidopsis Genome Sequencing Consortium (1999). Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature 402, 769-777. [PDF]
  3. Hoheisel, J.D. (1999). DNS-Chips - Technologie mit Zukunft. Biotechnologie-Agentur Baden-Württemberg 4, 6.
  4. Li, Z., Rossi, E.A., Hoheisel, J.D., Kalderon, D. & Rubin, C.S. (1999). Generation of a novel A kinase anchor protein and a myristoylated alanine-rich C kinase substrate-like analog from a single gene. J. Biol. Chem. 274, 27191-27200. [PDF]
  5. Wallrapp, C., Müller-Pillasch, F., Micha, A., Wenger, C., Geng, M., Solinas-Toldo, S., Lichter, P., Frohme, M., Hoheisel, J.D., Adler, G. & Gress, T.M. (1999). Strategies for the detection of disease genes in pancreatic cancer. Ann. N.Y. Acad. Sci. 880, 122-146.
  6. Wallrapp, C., Müller-Pillasch, F., Micha, A., Wenger, C., Geng, M., Solinas-Toldo, S., Lichter, P., Frohme, M., Hoheisel, J.D., Adler, G. & Gress, T.M. (1999). Novel technologies for detection of genomic and transcriptional alterations in pancreatic cancer. Ann. Oncology 10, suppl. 4, S64-S68. [PDF]
  7. Geng, M., Wallrapp, C., Müller-Pillasch, F., Frohme, M., Hoheisel, J.D. & Gress, T. (1999). Isolation of differentially expressed genes by combining representational difference analysis (RDA) and cDNA library arrays. Expression Genetics: Accelerated and High-Throughput Methods Book (McClelland, M. & Pardee, A., eds.), Biotechniques Books, Natick, 145-153.
  8. Matysiak, S., Hauser, N.C., Würtz, S. & Hoheisel, J.D. (1999). Improved solid supports and spacer/linker systems for the synthesis of spatially addressable PNA-libraries. Nucleosides & Nucleotides 18, 1289-1291.
  9. Beier, M. & Hoheisel, J.D. (1999). New developments in light-controlled synthesis of DNA-arrays. Nucleosides & Nucleotides 18, 1301-1304.
  10. Weiler, J., Matysiak, S., Gausepohl, H. & Hoheisel, J.D. (1999). New developments in hybridisation based DNA screening on oligomer arrays. Solid Phase Synthesis - Peptides, Proteins and Nucleic Acids (Epton, R., ed.), Mayflower Worldwide, 93-96.
  11. Beier, M. & Hoheisel, J.D. (1999). Versatile derivatisation of solid support media for covalent bonding on DNA-microchips. Nucleic Acids Res. 27, 1970-1977. [PDF]
  12. Matysiak, S., Würtz, S., Hauser, N., Gausepohl, H. & Hoheisel, J.D. (1999). PNA-arrays for nucleic acid detection. Peptide Nucleic Acids: Protocols and Applications (Nielsen, P. & Egholm, M., eds.), Horizon Scientific Press, Wymondham, 119-128.
  13. Hoheisel, J.D. (1999). DNS-Chip Technologie - eine Herausforderung. med. genetik 11, 4-5.
  14. Vingron, M. & Hoheisel, J.D. (1999). Computational aspects of expression data analysis. J. Mol. Med. 77, 3-7. [PDF]

1998

  1. Craig, A. & Hoheisel, J.D. (eds.) (1998). Methods in Microbiology 28 - Automation. Academic Press.
  2. Hauser, N.C., Scheideler, M., Matysiak, S., Vingron, S. & Hoheisel, J.D. (1998). DNA arrays for transcriptional profiling. Methods in Microbiology 28 - Automation (Craig, A. & Hoheisel, J.D., eds.), Academic Press, 193-204.
  3. Persson, K., Åslund, L., Grahn, B., Hanke, J. & Heby, O. (1998). Characterization of the Trypanosoma cruzi S-adenosylmethionine decarboxylase gene and the encoded enzyme. Biochem. J.333, 527-537. [PDF]
  4. Geng, M., Wallrapp, C., Müller-Pillasch, F., Frohme, M., Hoheisel, J.D. & Gress, T. (1998). Isolation of differentially expressed genes by combining representational difference analysis (RDA) and cDNA library arrays. BioTechnique 25, 434-438. [PDF]
  5. Hoheisel, J.D. & Vingron, M. (1998). DNS-Chip Technologie. BioSpektrum 6, 17-20. (reprinted 1999 in Biochemica 3, 31-35.)
  6. Andersson, B., Åslund, L., Hoheisel, J.D. & Pettersson, U. (1998). 93.4 kb of complete sequence from chromosome 3 of Trypanosoma cruzi containing a strand switch region. Genome Res. 8, 809-816. [PDF]
  7. Hauser, N.C., Vingron, M., Scheideler, M., Krems, B., Hellmuth, K., Entian, K.-D. & Hoheisel, J.D. (1998). Transcriptional profiling on all open reading frames of Saccharomyces cerevisiae. Yeast 14, 1209-1221. [PDF]
  8. Chan, H.Y.E., Zhang, Y., Hoheisel, J.D. & O'Kane, C.J. (1998) Identification and characterisation of the gene for Drosophila L3 ribosomal protein. Gene 212, 119-125. [PDF]
  9. Hauser, N., Scheideler, M. & Hoheisel, J.D. (1998). DNS-Chip Technologie zur Untersuchung von Genaktivität. Krebsforschung heute 98 (Stamatiadis-Smidt, M.A., Ed.); Steinkopff Verlag, 190-193.
  10. Gausepohl, H., Weiler, J., Schwarz, S., Fitzpattrick, R. & Hoheisel, J.D. (1998). Synthesis of large PNA arrays on membranes using the SPOT method. Peptides 1996 - Proceedings of the 24th Symposium of the European Peptide Society (Ramage, R., and Epton, R., eds.), Mayflower Scientific Ltd., 411-412.
  11. Scholler, P., Heber, S. & Hoheisel, J.D. (1998). Optimisation and automation of fluorescence-based DNA hybridisation for high-throughput clone mapping. Electrophoresis 19, 504-508. [PDF]
  12. Hanke, J., Frohme, M., Laurent, J.P., Swindle, J. & Hoheisel, J.D. (1998). Hybridisation mapping of Trypanosoma cruzi chromosomes III and IV. Electrophoresis 19, 482-485. [PDF]
  13. Frohme, M., Hanke, J., Åslund, L., Pettersson, U. & Hoheisel, J.D. (1998). Selective generation of chromosomal cosmid libraries within the Trypanosoma cruzi genome project. Electrophoresis19, 478-481. [PDF]

1997

  1. Krebber, H., Bastians, H., Hoheisel, J.D., Lichter, P., Ponstingl, H. & Joos, S. (1997). Localisation of the gene encoding the Ran-binding protein RanBP2 to human chromosome 2q11-13 by fluorescence in situ hybridisation. Genomics 43, 247-248. [PDF]
  2. Weiler, J. & Hoheisel, J.D. (1997). Picomole synthesis of high quality oligonucleotide primers in combination with the preparation of oligonucleotide arrays. Nucl. & Nucl. 16, 1793-1796.
  3. Hoheisel, J.D. (1997). Oligomer chip technology. Trends Biotechnol.15, 465-469. [PDF]
  4. Weiler, J., Hauser, N. & Hoheisel, J.D. (1997). New developments in oligomer array technologies. Nucl. & Nucl. 16, 777-780.
  5. Christodoulou, S., Lockyer, A.E., Foster, J.M., Hoheisel, J.D. & Roberts, D.B. (1997). Nucleotide sequence of a Drosophila melanogaster cDNA encoding a clanexin homologue. Gene 191, 143-148. [PDF]
  6. Weiler, J., Gausepohl, H., Hauser, N., Jensen, O.N. & Hoheisel, J.D. (1997). Hybridisation based DNA screening on peptide nucleic acid (PNA) oligonucleotide arrays. Nucleic Acids Res. 25, 2792-2799. [PDF]
  7. Hanke, J., Solinas-Toldo, S. & Hoheisel, J.D. (1997). Genomanalyse und Gendiagnostik. Handbuch der molekularen Medizin, Band 1 (Ganten, D. & Ruckpaul, K., Eds.); Springer Verlag, pp. 51-91.
  8. Ohkura, H., Török, T., Tick, G., Hoheisel, J.D., Kiss, I. & Glover, D.M. (1997). Mutation of a gene for a Drosophila kinesin like protein, Klp38B, leads to failure of cytokinesis. J. Cell Science110, 945-954. [PDF]
  9. Bastians, H., Krebber, H., Hoheisel, J.D., Ohl, S., Lichter, P., Ponstingl, H. & Joos, S. (1997). Assignment of the human serine/threonine protein phosphatase 4 gene (PPP4C) to chromosome 16p11.2-12.1 by fluorescence in situ hybridisation. Genomics 42, 181-182. [PDF]
  10. Campbell, H.D., Fountain, S., Young, I.G., Claudianosll, C., Hoheisel, J.D., Chen, K.-S. & Lupski, J.R. (1997). Genomic structure, evolution and expression of human fli, a gelsolin and leucine-rich-repeat family member: linkage to HUGL. Genomics 42, 46-54. [PDF]
  11. Johnston, M., Hillier, L., Riles, L., Albermann, K., André, B., Ansorge, W., Benes, V., Brückner, M., Delius, H., Dubois, E., Düsterhöft, A., Entian, K.-D., Floeth, M., Goffeau, A., Hebling, U., Heumann, K., Heuss-Neitzel, D., Hilbert, H., Hilger, F., Kleine, K., Kötter, P., Louis, E.J., Messenguy, F., Mewes, H.W., Miosga, T., Möstl, D., Müller-Auer, S., Nentwich, U., Obermaier, B., Piravandi, E., Pohl, T.M., Portetelle, D., Purnelle, B., Rechmann, S., Rieger, M., Rinke, M., Rose, M., Scharfe, M., Scherens, B., Scholler, P., Schwager, C., Schwarz, S., Underwood, A. P., Urrestarazu, L. A., Vandenbol, M., Verhasselt, P., Vierendeels, F., Voet, M., Volckaert, G., Voss, H., Wambutt, R., Wedler, E., Wedler, H., Zimmermann, F. K., Zollner, A., Hani, J. & Hoheisel, J.D. (1997). The complete sequence of Saccharomyces cerevisiae chromosome XII. Nature 387 (suppl.), 87-90. [PDF]
  12. Jacq, C., et al., Hoheisel, J.D., et al. (1997). The nucleotide sequence of chromosome IV of Saccharomyces cerevisiae. Nature 387 (suppl.), 75-78. [PDF]
  13. Goffeau, A. et al., Hoheisel, J.D., et al. (1997) Yeast Genome Directory. Nature 387 (suppl.), 5. [PDF]
  14. Gress, T.M., Wallrapp, C., Frohme, M., Müller-Pillasch, F., Lacher, U., Friess, H., Büchler, M., Adler, G. & Hoheisel, J.D. (1997). Identification of genes with specific expression in pancreatic cancer by use of cDNA representational difference analysis. Genes Chrom. Cancer 19, 97-103. [PDF]
  15. Bastians, H., Krebber, H., Vetrie, D., Hoheisel, J.D., Lichter, P., Ponstingl, H. & Joos, S. (1997). Localisation of the novel serine/threonine protein phosphatase 6 gene (PPP6C) to human chromosome Xq22.3. Genomics 41, 296-297. [PDF]
  16. Werner, E., Holder, A.A. & Hoheisel, J.D. (1997). Growth and storage of YAC-clones in Hogness Freezing Medium. Nucleic Acids Res. 25, 1467-1468. [PDF]
  17. The Trypanosoma cruzi genome consortium: Zingales, B., Rondinelli, E., Degrave, W., da Silveira, J.F., Levin, M., Le Paslier, D., Modabber, F., Dobrokhotov, B., Swindle, J., Kelly, J. M., Åslund, L., Hoheisel, J.D., Ruiz, A.M., Cazzulo, J.J., Pettersson, U. & Frasch, A.C. (1997). The Trypanosoma cruzi genome initiative. Parasitol. Today 13, 16-21. [PDF]

1996

  1. Weiler, J. & Hoheisel, J.D. (1996). Combining the preparation of oligonucleotide arrays and synthesis of high quality primers. Anal. Biochem. 243, 218-227. [PDF]
  2. Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H. & Oliver, S.G. (1996). Life with 6000 genes. Science 274, 546-567. [PDF]
  3. Scholler, P., Benes, V., Voss, H., Ansorge, W. & Hoheisel, J.D. (1996). Sequencing 39,350 bp of Saccharomyces cerevisiae chromosome XII utilising ordered shotgun libraries. DNA Sequence6, 257-262.
  4. Hanke, J., Sánchez, D.O., Henriksson, J., Åslund, L., Pettersson, U., Frasch, A.C.C. & Hoheisel, J.D. (1996). Towards the mapping of the Trypanosoma cruzi genome; analyses on a representative cosmid library. BioTechniques 21, 686-693. [PDF]
  5. Hoheisel, J.D., Maier, E., Mott, R. & Lehrach, H. (1996). Integrated genome mapping by hybridization techniques. Analysis of Non-Mammalian Genomes - A Practical Guide (Birren, B. & Lai, E., Eds.), Academic Press, pp. 319-346.
  6. Hoheisel, J.D. (1996). Sequence-independent and linear variation of oligonucleotide DNA-binding stabilities. Nucleic Acids Res. 24, 430-432. [PDF]

1995

  1. Scholler, P., Karger, A.E., Meier-Ewert, S., Lehrach, H., Delius, H. & Hoheisel, J.D. (1995). Fine-mapping of shotgun template-libraries; an efficient strategy for the systematic sequencing of genomic DNA. Nucleic Acids Res. 23, 3842-3849. [PDF]
  2. Lin, W.-H., Huang, L.-H., Yeh, J.-Y., Hoheisel, J.D., Lehrach, H., Sun, Y.H. & Tsai, S.-H. (1995). A Drosophila GATA transcription factor is expressed in multiple tissues in the developing embryos. J. Biol. Chem. 270, 25150-25158. [PDF]
  3. Stephen W. Scherer & Hoheisel, J.D. (1995). Genome analysis. Mol. Med. Today 1, 258-259. [PDF]
  4. Cornell, M.J., William, T.A., Coates, D., Corvol, R., Soubrier, F., Hoheisel, J.D., Lehrach, H. & Isaac, R.E. (1995). Cloning and expression of an evolutionary conserved single-domain angiotensin converting enzyme from Drosophila melanogaster. J. Biol. Chem. 270, 13613-13619. [PDF]
  5. Scholler, P., Schwarz, S. & Hoheisel, J.D. (1995). High-resolution cosmid mapping of the left arm of Saccharomyces cerevisiae chromosome XII; a first step towards an ordered sequencing approach. Yeast 11, 659-666. [PDF]
  6. Chen, K.-S., Nguyen, D., Hoheisel, J.D., Young, I.G., Miklos, G.L.G., Greenberg, F., Shaffer, L.G., Campbell, H.D. & Lupski, J.R. (1995). The Drosophila melanogaster flightless-I gene (fliI) human homologue maps within the Smith-Magenis microdeletion critical region in 17p11.2. Am. J. Hum. Genet. 56, 175-182.

1994

  1. Hoheisel, J.D. (1994). Creation of a rare-cutter multiple-cloning site. BioTechniques 17, 456-460.
  2. Hoheisel, J.D., Ross, M.T., Zehetner, G. & Lehrach, H. (1994). Relational genome analysis using reference libraries and hybridisation fingerprinting. J. Biotechnol. 35, 121-134. [PDF]
  3. Hoheisel, J.D. (1994). Application of hybridisation techniques to genome mapping and sequencing. Trends Genet. 10, 79-83. [PDF]
  4. Maier, E., Hoheisel, J.D. & Lehrach, H. (1994). Ordered clone libraries as high resolution mapping tools. Proceedings of the 6th European Congress on Biotechnology (Alberghina, L., Frontali, L. & Sensi, P., eds.), Elsevier, pp. 191-194.

1993 (Publications of Jörg D. Hoheisel prior to joining DKFZ)

  1. Hoheisel, J.D., Maier, E., Meier-Ewert, S. & Lehrach, H. (1993). Relational genome analysis based on hybridisation techniques. Ann. Biol. Clin. 50, 827-829.
  2. Hoheisel, J.D. & Lehrach, H. (1993). Use of reference libraries and hybridisation fingerprinting for relational genome analysis. FEBS Lett. 325, 118-122. [PDF]
  3. Mott, R., Grigoriev, A., Maier, E., Hoheisel, J.D. & Lehrach, H. (1993). Algorithms and software tools for ordering clone libraries; application to the mapping of the genome of Schizosaccharomyces pombe. Nucleic Acids Res. 21, 1965-1974. [PDF]
  4. Hoheisel, J.D., Maier, E., Mott, R., McCarthy, L., Grigoriev, A.V., Schalkwyk, L.C., Nizetic, D., Francis, F. & Lehrach, H. (1993). High-resolution cosmid and P1 maps spanning the 14-Mbp genome of the fission yeast Schizosaccharomyces pombe. Cell 73, 109-120.
  5. Hoheisel, J.D. (1993). On the activities of Escherichia coli Exonuclease III. Anal. Biochem. 209, 238-246. [PDF]

1992

  1. Gress, T.M., Hoheisel, J.D., Lennon, G.G., Zehetner, G. & Lehrach, H. (1992). Hybridisation fingerprinting of high density cDNA-library arrays with cDNA pools derived from whole tissues. Mamm. Genomes 3, 609-619. [PDF]
  2. Maier, E., Hoheisel, J.D., McCarthy, L., Mott, R., Grigoriev, A.V., Monaco, A.P., Larin, Z. & Lehrach, H. (1992). Yeast artificial chromosome clones completely spanning the genome of Schizosaccharomyces pombe. Nature Genet. 1, 273-277. [PDF]
  3. Ross, M.T., Hoheisel, J.D., Monaco, A.P., Larin, Z., Zehetner, G. & Lehrach, H. (1992). High-density gridded YAC filters: their potential as genome mapping tools. Techniques for the Analysis of Complex Genomes (Anand, R. ed.), Academic Press, pp. 137-154.

1991

  1. Freese, S., Hoheisel, J.D., Lehrach, H. & Wright, G. (1991). N2-substituted-2'-deoxyguanosine 5'-triphosphates as substrates for E. coli DNA polymerase I. Nucleosides & Nucleotides 10, 1507-1524.
  2. Hoheisel, J.D., Lennon, G.G., Zehetner, G. & Lehrach, H. (1991). Use of high coverage reference libraries of Drosophila melanogaster for relational data analysis; a step towards mapping and sequencing of the genome. J. Mol. Biol. 220, 903-914. [PDF]
  3. Hoheisel, J.D., Drmanac, R., Larin, Z., Lennon, G., Monaco, A.P., Nizetic, D., Ross, M., Zehetner, G. & Lehrach, H. (1991). Use of high coverage libraries for an integrated analysis of genomic DNA. Genome Analysis: From Sequence to Function (Collins, J. & Driesel, A.J. eds.), Advances Mol. Gen. 4, Hüthig Buch Verlag, pp. 125-132.

1990

  1. Lehrach, H., Drmanac, R., Hoheisel, J.D., Larin, Z., Lennon, G., Monaco, A.P., Nizetic, D., Zehetner, G. & Poustka, A. (1990). Hybridisation fingerprinting in genome mapping and sequencing. Genome Analysis Volume 1: Genetic and Physical Mapping (Davies, K.E. & Tilghman, S. eds.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY), pp. 39-81.
  2. Hoheisel, J.D. & Lehrach, H. (1990). Quantitative measurements on the duplex stability of 2.6-diaminopurine and 5-chloro-uracil nucleotides using enzymatically synthesized oligomers. FEBS Lett. 274, 103-106. [PDF]
  3. Hoheisel, J.D. (1990). Extension of a pUC18-like polylinker by the octanucleotide recognition sites of NotI, FseI, SfiI and PacI. Trends Genet. 6, 346.
  4. Hoheisel, J.D., Craig, A.G. & Lehrach, H. (1990). Effect of 5-bromo and 5-methyl deoxycytosine on duplex stability and discrimination of the NotI octadeoxynucleotide; quantitative measurements using thin-layer chromatography. J. Biol. Chem. 265, 16656-16660. [PDF]
  5. Craig, A., Nizetic, D., Hoheisel, J.D., Zehetner, G. & Lehrach, H. (1990). Ordering of cosmid clones covering the Herpes Simplex Virus Type I (HSV-I) genome: a test case for fingerprinting by hybridisation. Nucleic Acids Res. 18, 2653-2660. [PDF]

1989

  1. Hoheisel, J.D., Nizetic, D. & Lehrach, H. (1989). Control of partial digestion combining the enzymes Dam methylase and MboI. Nucleic Acids Res. 17, 4571-4582. [PDF]
  2. Craig, A., Nizetic, D., Hoheisel, J.D., Monaco, A.P., Zehetner, G., Lennon, G., Young, B. & Lehrach, H. (1989). Long-range ordering of clones by probe fingerprinting. Polymerase Chain Reaction (Erlich, H.A., Gibbs, R.A. & Kazazian, H.H. eds.), Curr. Comm. Mol. Biol., Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY), pp. 205-210.
  3. Hoheisel, J.D. (1989). Ultrafast Microprep protocol for large-number preparations of recombinant plasmids and cosmids. Technique 1, 21-27. [PDF]
  4. Hoheisel, J.D. (1989). A cassette with seven unique restriction sites, including octanucleotide sequences: extension of multiple-cloning-site plasmids. Gene 80, 151-154. [PDF]

1988 - 1986

  1. Hoheisel, J.D. (1988). Untersuchung verschiedener, topologisch induzierter DNS-Sekundärstrukturen. (Thesis) Hartung-Gorre Verlag, Konstanz, ISBN 3-89191-177-7.
  2. Hoheisel, J.D. & Pohl, F.M. (1987). Searching for potential Z-DNA in genomic Escherichia coli DNA. J. Mol. Biol. 193, 447-464. [PDF]
  3. Hoheisel, J.D. & Pohl, F.M. (1986). Simplified preparation of unidirectional deletion clones. Nucleic Acids Res. 14, 3605. [PDF]

Patents

For further information, please contact Dr. Jörg Hoheisel or the DKFZ Technology Transfer Office.

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