Publications

Publications listed below are related to the current projects and recent research activities. A complete publication list can be found under the ORCID number https://orcid.org/0000-0002-7030-8153 from Maïwen Caudron-Herger

Wassmer E, Koppány G, Hermes M, Diederichs S and Caudron-Herger M. Refining the pool of RNA-binding domains advances the classification and prediction of RNA-binding proteins.
Nucleic Acids Res. 2024; gkae536, https://doi.org/10.1093/nar/gkae536

Rajagopal V, Loubal AS, Engel N, Wassmer E, Seiler J, Schilling O, Caudron-Herger M and Diederichs S. Proteome-wide identification of RNA-dependent proteins in lung cancer cells.
Cancers. 2022; 14:6109.

Caudron-Herger M*, Ralf E. Jansen, Elsa Wassmer and Sven Diederichs. RBP2GO: a comprehensive pan-species database on RNA-binding proteins, their interactions and functions.
Nucleic Acids Res. 2021; 49:D425-436. *Corresponding author.

Lyu Y, Caudron-Herger M and Diederichs S. circ2GO: a database linking circular RNAs to gene function.
Cancers. 2020; 12:2975.

Dhamija S, Yang CM, Seiler J, Myacheva K, Caudron-Herger M, Wieland A, Adbelkarim M, Sharma Y, Riester M, Gross M, Maurer J and Diederichs S. A pan-cancer analysis reveals non-stop extension mutations causing SMAD4 tumour suppressor degradation.
Nature Cell Biology. 2020; 22:999-1010.

Caudron-Herger M*, Barreau E, Nasa I, Schultz A, Seiler J, Kettenbach AN and Diederichs S*. Identification, quantification and bioinformatic analysis of RNA-dependent proteins by RNase treatment and density gradient ultracentrifugation using R-DeeP.
Nature Protocols. 2020; 15:1338-1370. *Corresponding authors.

Caudron-Herger M*, Rusin SF, Adamo ME, Seiler J, Schmid V, Barreau E, Kettenbach AN and Diederichs S*. R-DeeP: Proteome-wide and quantitative identification of RNA-dependent proteins by density gradient ultracentrifugation.
Mol Cell. 2019; 75:184-199. *Corresponding authors.

Sharma Y, Miladi M, Dukare S, Boulay Karine, Caudron-Herger M, Groß Matthias, Backhofen Rolf and Diederichs S. A pan-cancer analysis of synonymous mutations.
Nat. Commun. 2019; 10, Article number:2569.

Goyal A, Fiskin E, Gutschner T, Polycarpou-Schwarz M, Groß M, Neugebauer J, Gandhi M, Caudron-Herger M, Benes V and Diederichs S. A cautionary tale of sense-antisense gene pairs: Independent regulation despite inverse correlation of expression.
Nucleic Acids Research. 2017; 45: 12496-12508.

Seiler J, Breinig M, Caudron-Herger M, Polycarpou-Schwarz M, Boutros M, and Diederichs S. The lncRNA VELUCT strongly regulates viability of lung cancer cells despite its extremely low abundance.
Nucleic Acids Res. 2017; epub: DOI: 10.1093/nar/gkx076.

Caudron-Herger M and Diederichs S. Insights from the degradation mechanism of Cyclin D into targeted therapy of the cancer cell cycle.
Sig Transduct Target Ther. 2021; 6: 311. DOI: https://doi.org/10.1038%2Fs41392-021-00732-y

Gandhi M., Caudron-Herger M and Diederichs S. RNA motif and combinatorial prediction of interactions, stability and localization of noncoding RNAs.
Nat Struct Mol Biol. 2018; 24: 1070-1076. DOI: 10.1038/s41594-018-0155-0.