Publications (2018-2020)

  • Kentepozidou, Elissavet; Aitken, Sarah J; Feig, Christine; Stefflova, Klara; Ibarra-Soria, Ximena; Odom, Duncan T; Roller, Maša; Flicek, Paul; Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains Genome Biology 2020
  • Azazi, Dhoyazan; Mudge, Jonathan M; Odom, Duncan T; Flicek, Paul; Functional signatures of evolutionarily young CTCF binding sites bioRxiv 2020
  • Karagianni, Panagiota; Moulos, Panagiotis; Schmidt, Dominic; Odom, Duncan T; Talianidis, Iannis; Bookmarking by Non-pioneer Transcription Factors during Liver Development Establishes Competence for Future Gene Activation Cell Reports 2020
  • Gergely, Fanni; Stojic, Lovorka; Odom, Duncan; Marioni, John; A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division Nature communications 2020
  • Ernst, Christina; Eling, Nils; Martinez-Jimenez, Celia P; Marioni, John C; Odom, Duncan T; Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis Nature communications 2019
  • Jacquin, Adrien LS; Odom, Duncan T; Lukk, Margus; Crisflash: open-source software to generate CRISPR guide RNAs against genomes annotated with individual variation Bioinformatics 2019
  • Yang, Minjun; Vesterlund, Mattias; Siavelis, Ioannis; Moura-Castro, Larissa H; Castor, Anders; Fioretos, Thoas; Jafari, Rozbeh; Lilljebjörn, Henrik; Odom, Duncan T; Olsson, Linda; Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia Nature communications 2019
  • Chen, Hung‐Chang; Eling, Nils; Martinez‐Jimenez, Celia Pilar; O'Brien, Louise McNeill; Carbonaro, Valentina; Marioni, John C; Odom, Duncan T; de la Roche, Maike; IL‐7‐dependent compositional changes within the γδ T cell pool in lymph nodes during ageing lead to an unbalanced anti‐tumour response EMBO reports 2019
  • Aitken, Sarah J; Anderson, Craig J; Connor, Frances; Pich, Oriol; Sundaram, Vasavi; Feig, Christine; Rayner, Tim F; Lukk, Margus; Aitken, Stuart; Luft, Juliet; Pervasive lesion segregation shapes cancer genome evolution BioRxiv 2019
  • Kolmogorov, Mikhail; Armstrong, Joel; Raney, Brian J; Streeter, Ian; Dunn, Matthew; Yang, Fengtang; Odom, Duncan; Flicek, Paul; Keane, Thomas M; Thybert, David; Chromosome assembly of large and complex genomes using multiple references Genome research 2018
  • Lowe, Robert; Barton, Carl; Jenkins, Christopher A; Ernst, Christina; Forman, Oliver; Fernandez-Twinn, Denise S; Bock, Christoph; Rossiter, Stephen J; Faulkes, Chris G; Ozanne, Susan E; Ageing-associated DNA methylation dynamics are a molecular readout of lifespan variation among mammalian species Genome biology 2018
  • Aitken, Sarah J; Ibarra-Soria, Ximena; Kentepozidou, Elissavet; Flicek, Paul; Feig, Christine; Marioni, John C; Odom, Duncan T; CTCF maintains regulatory homeostasis of cancer pathways Genome biology 2018
  • Dixon, Jesse R; Xu, Jie; Dileep, Vishnu; Zhan, Ye; Song, Fan; Le, Victoria T; Yardımcı, Galip Gürkan; Chakraborty, Abhijit; Bann, Darrin V; Wang, Yanli; Integrative detection and analysis of structural variation in cancer genomes Nature genetics 2018
  • Lilue, Jingtao; Doran, Anthony G; Fiddes, Ian T; Abrudan, Monica; Armstrong, Joel; Bennett, Ruth; Chow, William; Collins, Joanna; Collins, Stephan; Czechanski, Anne; Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci Nature genetics 2018

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