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Division of Molecular Genome Analysis

Prof. Dr. Stefan Wiemann

Regulation signaling network by miRNAs. Breast cancer cells were transfected with a library of 810 human miRNA mimics and induced effects were analyzed by quantitative analysis of 26 different proteins of the EGFR signaling network. Thus activating and inhibiting effects on protein abundance could be identified (left). High stringency miRNA-protein network with proteins being indicated in blue while miRNAs are in orange (right). Activating edges are in red, inhibiting edges in green.
Vergrößerte Ansicht Regulation signaling network by miRNAs. Breast cancer cells were transfected with a library of 810 human miRNA mimics and induced effects were analyzed by quantitative analysis of 26 different proteins of the EGFR signaling network. Thus activating and inhibiting effects on protein abundance could be identified (left). High stringency miRNA-protein network with proteins being indicated in blue while miRNAs are in orange (right). Activating edges are in red, inhibiting edges in green.

Cancer and other human diseases arise from genetic aberrations that are either inherited or occur - as in most cancers – spontaneously in somatic cells. These defects cause abnormal activities of gene products that lead to malfunctioning of molecular and cellular interactions which, in consequence, may induce tumors and cause cancer progression.
The central objective of our division is to understand the complex molecular mechanisms that have evolved in the regulation of signaling networks and how these impact on cancer development, metastasis, and drug resistance. To this end, we generate and maintain resources for large-scale experimentation, apply high-throughput functional genomics and proteomics technologies, and analyze candidate genes using in vitro as well as in vivo systems. Effects of perturbations (gene gain- and loss-of-function, miRNA, drugs) imposed on the signaling processes are experimentally tested and then computationally modeled. This generates mechanistic knowledge that is exploited to identify new diagnostic and prognostic markers as well as to develop novel strategies for therapeutic intervention. Along these lines our major focus is on breast cancer, where we investigate protein and non-protein factors that are involved in the progression of different subtypes via their activities in interrelated signaling networks.

We have already seen from our current data that signaling is not regulated in isolated pathways but rather in complex networks. Therefore, in the future we will investigate the impact individual perturbations have in a variety of cellular pathways and at different levels (DNA, RNA, protein, metabolite, …, phenotype). This should provide us with a better understanding of the connectivity in multi-layer interaction systems. Such information will be inevitable, for example, to identify strategies that should help to overcome drug resistance.
While much of our current knowledge is based on in vitro experiments we need to validate findings in vivo in order to prove their relevance. To this end, we will generate and test animal models and challenge our hypotheses with patient samples. Collaborations to this end have already been established and first promising results have already been obtained.

Selected Publications

Wiemann S, Pennacchio C, Hu Y, Hunter P, Harbers M, Amiet A, Bethel G, Busse M, Carninci P, Dunham I, Hao T, Harper JW, Hayashizaki Y, Heil O, Hennig S, Hotz-Wagenblatt A, Jang W, Jöcker A, Kawai J, Koenig C, Korn B, Lambert C, LeBeau A, Lu S, Maurer J, Moore T, Ohara O, Park J, Rolfs A, Salehi-Ashtiani K, Seiler C, Simmons B, van Brabant Smith A, Steel J, Wagner L, Weaver T, Wellenreuther R, Yang S, Vidal M, Gerhard DS, LaBaer J, Temple G, Hill DE: The ORFeome Collaboration: a genome-scale human ORF-clone resource. Nature Methods 2016, 13(3):191-192. PMID: 26914201

Frohlich H, Bahamondez G, Gotschel F, Korf U: Dynamic Bayesian Network Modeling of the Interplay between EGFR and Hedgehog Signaling. PLoS One 2015, 10(11):e0142646. PMID: 26571415

Shukla K, Sharma AK, Ward A, Will R, Hielscher T, Balwierz A, Breunig C, Munstermann E, Konig R, Keklikoglou I, Wiemann S: MicroRNA-30c-2-3p negatively regulates NF-kappaB signaling and cell cycle progression through downregulation of TRADD and CCNE1 in breast cancer. Mol Oncol 2015, 9(6):1106-1119. PMID: 25732226

Keklikoglou I, Hosaka K, Bender C, Bott A, Koerner C, Mitra D, Will R, Woerner A, Muenstermann E, Wilhelm H, Cao Y, Wiemann S: MicroRNA-206 functions as a pleiotropic modulator of cell proliferation, invasion and lymphangiogenesis in pancreatic adenocarcinoma by targeting ANXA2 and KRAS genes. Oncogene 2015, 34(37):4867-4878. PMID: 25500542

last update: 29/02/2016 back to top