Eli Zamir, PhD
Eli Zamir, PhD
Position:
Computational Biologist
E-mail:
e.zamir(at)dkfz-heidelberg.de@dkfz.de
Phone:
+49 6221 42 4945
Scientific CV
Since August 2019
Computational Biologist, Division of Microbiome and Cancer, DKFZ, Heidelberg.
2016 – 2019
Project Leader, Max Planck Institute for Medical Research, Heidelberg, Germany.
2009 – 2016
Group Leader, Max Planck Institute of Molecular Physiology, Dortmund, Germany.
2004 – 2008
Postdoctoral Fellow, EMBL, Heidelberg, Germany.
2001 – 2004
Postdoctoral Fellow, Weizmann Institute of Science, Rehovot, Israel.
1996 – 2001
PhD. studies, Weizmann Institute of Science, Rehovot, Israel.
1993 – 1996
MSc. studies, Weizmann Institute of Science, Rehovot, Israel.
1990 – 1993
BSc. studies, Tel-Aviv University, Israel.
Awards
2004
EMBO long-term fellowship
2000
The Giora Yoel Yashinsky Memorial Prize for distinction in PhD studies, Weizmann Institute, Israel.
1999
Distinction scholarship for achievements in research and studies, Feinberg Graduate School, Weizmann Institute, Israel.
1993
Distinction prize, Moshe Avisar Memorial, Tel-Aviv University, Israel.
1993
Dean's List award, Tel-Aviv University, Israel.
1992
Distinction prize, David Rotenberg Memorial, Tel-Aviv University, Israel.
1992
Dean's List award, Tel-Aviv University, Israel.
Selected Publications
Stein-Thoeringer, C. K., Saini N. Y., Zamir, E., Blumenberg, V., Schubert, M. L., Mor, U., Fante, M. A., Schmidt, S., Hayase, E., Hayase, T., Rohrbach, R., Chang, C. C., McDaniel, L., Flores, I., Gaiser, R., Edinger, M., Wolff, D., Heidenreich, M., Strati, P., Nair, R., Chihara, D., Fayad, L. E., Ahmed, S., Iyer S. P., Steiner, R. E., Jain, P., Nastoupil, L. J., Westin, J., Arora, R., Wang, M. L., Turner, J., Menges, M., Hidalgo-Vargas M., Reid, K., Dreger, P., Schmitt, A., Müller-Tidow, C., Locke, F. L., Davila, M. L., Champlin, R. E., Flowers, C. R., Shpall, E. J., Poeck, H., Neelapu, S. S., Schmitt, M., Subklewe, M., Jain, M. D., Jenq, R. R. and Elinav, E. A non-antibiotic-disrupted gut microbiome is associated with clinical responses to CD19-CAR-T cell cancer immunotherapy. Nature Medicine (2023) 29(4), 906-916.
de Castilhos, J., Zamir, E., Hippchen, T., Rohrbach, R., Schmidt, S., Hengler, S., Schumacher, H., Neubauer, M., Kunz, S., Müller-Esch, T., Hiergeist, A., Gessner, A., Khalid, D., Gaiser, R., Cullin, N., Papagiannarou, S. M., Beuthien-Baumann, B., Krämer, A., Bartenschlager, R., Jäger, D., Müller, M., Herth, F., Duerschmied, D., Schneider, J., Schmid, R. M., Eberhardt, J. F., Khodamoradi, Y., Vehreschild, M. J. G. T., Teufel, A., Ebert, M. P., Hau, P., Salzberger, B., Schnitzler, P., Poeck, H., Elinav, E., Merle, U. and Stein-Thoeringer, C. K. Severe Dysbiosis and Specific Haemophilus and Neisseria Signatures as Hallmarks of the Oropharyngeal Microbiome in Critically Ill Coronavirus Disease 2019 (COVID-19) Patients. Clinical Infectious Diseases (2022, online: 2021) 75(1), 1063-1071.
Grecco, H. E., Imtiaz, S. and Zamir, E. Multiplexed imaging of intracellular protein networks. Cytometry A (2016) 89, 761-775.
Hoffmann, J-H., Fermin, Y., Stricker, R. L. O., Ickstadt, K. and Zamir, E. Symmetric exchange of multi-protein building blocks between stationary focal adhesions and the cytosol. eLIFE (2014) 3:e02257.
Koester, J., Zamir, E. and Rahmann, S. Efficiently mining protein interaction dependencies from large text corpora. Integrative Biology (2012) 4 (7), 805-812.
Zamir, E., Lommerse, P. H., Kinkhabwala, A., Grecco, H. E. and Bastiaens, P. I. Fluorescence fluctuations of quantum-dot sensors capture intracellular protein interaction dynamics. Nature Methods (2010) 7, 295-298.
Zamir, E. and Bastiaens, P. I. Reverse engineering intracellular biochemical networks. Nature Chemical Biology (2008) 4, 643-647.
Zamir, E. and Geiger, B. Molecular complexity and dynamics of cell-matrix adhesions. Journal of Cell Science, (2001) 114, 3583-3590.
Zamir, E., Katz, M., Posen, Y., Erez, N., Yamada, K. M., Katz, B., Z., Lin, S., Lin, D. C., Bershadsky, A., Kam, Z., and Geiger, B. Dynamics and segregation of cell-matrix adhesions in cultured fibroblasts. Nature Cell Biology (2000) 2, 191-196.
For full publications list, see: https://scholar.google.co.il/citations?user=e7JsB_sAAAAJ&hl=en
Additional Links
ORCID: https://orcid.org/0000-0001-8226-5480
www.eli-zamir.de