Functional Genome Analysis  (B070)
Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 580
D-69120 Heidelberg, Germany.
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 Publications Apart from publications in scientific journals, the division filed a total of 46 patents since 1995.

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  2021 to 1994  (to 1986)
  1. Rohden, F., Hoheisel, J.D. & Wieden, H.-J. (2021). Through the looking glass: milestones on the road towards mirroring life. Trends Biochem. Sci., in press. pdf icon
  2. Miao, B., Zhang, C., Stroh, N., Brenner, L., Hufnagel, K., Hoheisel, J.D. & Bandapalli, O.R. (2021). Transcription factor TFE3 regulates cell cycle by binding to hTERT promoter. Cancer Comm., in press. pdf icon
  3. Millán-Esteban, D., García-Casado, Z., Manrique-Silva, E., Virós, A., Kumar, R., Furney, S., López-Guerrero, J.A., Requena, C., Bañuls, J., Traves, V. & Nagore, E. (2021). Distribution and clinical role of KIT gene mutations in melanoma according to subtype: a study of 492 Spanish patients. Eur. J. Dermatol., in press. pdf icon
  4. Wu, Y., Kröller, L., Miao, B., Boekhoff, H., Bauer, A.S., Büchler, M.W., Hackert, T., Giese, N.A., Taipale, J. & Hoheisel, J.D. (2021). Promoter hypermethylation promotes the binding of transcription factor NFATc1, triggering oncogenic gene activation in pancreatic cancer. Cancers 13, 4569. pdf icon
  5. Lakeman et al. (2021). The predictive ability of the 313 variant-based polygenic risk score for contralateral breast cancer risk prediction in women of European ancestry with a heterozygous BRCA1 or BRCA2 pathogenic variant. Genet. Med., in press. pdf icon
  6. Rachakonda, S., Hoheisel, J.D. & Kumar, R. (2021). Occurrence, functionality, and abundance of TERT promoter mutations. Int. J. Cancer, in press. pdf icon
  7. Barnes et al. (2021). Breast and prostate cancer risks for male BRCA1 and BRCA2 pathogenic variant carriers using polygenic risk scores. J. Natl. Cancer Inst., in press. pdf icon
  8. Al-Shaheri, F.N., Alhamdani, M.S.S., Bauer, A.S., Giese, N., Büchler, M.W., Hackert, T. & Hoheisel, J.D. (2021). Blood biomarkers for differential diagnosis and early detection of pancreatic cancer. Cancer Treat. Rev. 96, 102193. pdf icon
  9. Gaudy-Marqueste, C., Macagno, N., Loundou, A., Ouafik, L., Budden, T., Mundra, P., Gremel, G., Akhras, V., Lin, L., Cook, M., Kumar, R., Grom, J.-J., Nagore, E., Marais, R. & Viros, A. (2021). Molecular characterization of fast growing melanoma. J. Am. Acad. Dermatol., in press. pdf icon
  10. Park et al. (2021). Gene-environment interactions relevant to estrogen and risk of breast cancer: Can gene-environment interactions be detected only among candidate SNPs from genome-wide association studies? Cancers 13, 2370. pdf icon
  11. Smith, S., Nagore, E., Budden, T., Kumar, R., Marais, R., Gaudy-Marqueste, C. & Viros, A. (2021). Molecular landscape of old age melanoma by survival and immunotherapy response. bioRXiv, doi: 10.1101/2021.01.27.428444. pdf icon
  12. Johnson et al. (2021). CYP3A7*1C allele: linking premenopausal oestrone and progesterone levels with risk of hormone receptor-positive breast cancers. Br. J. Cancer 124, 842-854. pdf icon
  13. Kapsner, L.A., Zavgorodnij, M.G., Majorova, S.P., Hotz-Wagenblatt, A., Kolychev, O.V., Lebedev, I.N., Hoheisel, J.D., Hartmann, A., Bauer, A., Mate, S., Prokosch, H.-U., Haller, F. & Moskalev, E.A. (2021). BiasCorrector: fast and accurate correction of all types of experimental biases in quantitative DNA methylation data derived by different technologies. Int. J. Cancer 149, 1150-1165. pdf icon
  14. Stang, A., Weilert, H., Lipp, M.J., Oldhafer, K.J., Hoheisel, J.D., Zhang, C. & Bauer, A.S. (2021). MicroRNAs in blood act as biomarkers of colorectal cancer and indicate potential therapeutic targets. Mol. Oncol. 15, 2480-2490. pdf icon
  15. Baxter et al. (2021). Functional annotation of the 2q35 breast cancer risk locus implicates a structural variant in influencing activity of a long-range enhancer element. Am. J. Hum. Genet. 108, 1190-1203. pdf icon
  16. Millán-Esteban, D., García-Casado, Z., Manrique-Silva, E., Kumar, R. & Nagore, E. (2021). KIT mutational status does not constitute an independent prognostic marker in cutaneous melanoma. A study on 688 Spanish patients. Melanoma Res. 31, 101-103. pdf icon
  17. Coignard et al. (2021). A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers. Nature Commun. 12, 1078. pdf icon
  18. Manrique-Silva, E., Rachakonda, S., Millán-Esteban, D., García-Casado, Z., Requena, C., Traves, V., Kumar, R. & Nagore, E. (2021). Clinical, environmental, and histological distribution of BRAF, NRAS and TERT promoter mutations among cutaneous melanoma patients. A retrospective study of 563 patients. Brit. J. Dermatol. 184, 504-513. pdf icon
  19. Bancalari, B., Ferrer-Guillen, S., Tejera-Vaquerizo, A., Requena, C., García-Casado, Z., Traves, V., Kumar, R. & Nagore, E. (2021). Longitudinal study of prognostic factors for localized cutaneous melanoma in patients who have been disease-free for five years. Eur. J. Dermatol. 31, 192-198. pdf icon
  20. Morra et al. (2021). Breast cancer risk factors and survival by tumor subtype: pooled analyses from the Breast Cancer Association Consortium Authors. Cancer Epidemiol. Biomarker Prev. 30, 623-642. pdf icon
  21. Dai, H., Rachakonda, S., Penack, P., Blau, I., Blau, O., Radujkovic, A., Müller-Tidow, C., Dreger, P., Kumar, R. & Luft, T. (2021). Polymorphisms in CXCR3 ligands predict early CXCL9 recovery and severe chronic GVHD. Blood Cancer J. 11, 42. pdf icon
  22. Kapoor et al. (2021). Combined associations of a polygenic risk score and classical risk factors with breast cancer risk. J. Natl. Cancer Inst., 113, 329-337. pdf icon
  23. Roth, S., Bose, P., Alhamdani, M.S.S., Tjaden, C., Zamzow, K., Hinz, U., Michalski, C.W., Hoheisel, J.D., Büchler, M.W., Hackert, T. (2021). A non-invasive diagnostic algorithm discriminating low- and high-risk pancreatic intraductal papillary mucinous neoplasms. Annals Surgery 273, e273-e275. pdf icon
  24. Kroupa, M., Sivaramakrishna, R., Veronika, V., Kristyna, T., Vaclav, L., Vodenkova, S., Cumova, A., Vodickova, L., Hemminki, K., Soucek, P., Kumar, R. & Vodicka, P. (2021). Genetic variation in telomerase, telomere length in peripheral blood lymphocytes in relation to prognosis and clinicopathological features in breast cancer patients. Mutagenesis 35, 491-497. pdf icon
  25. Lee, W.D., Pirona, A.C., Sarvin, B., Stern, A., Nevo-Dinur, K., Besser, E., Sarvin, N., Lagziel, S., Mukha, D., Raz, S., Aizenshtein, E. & Shlomi, T. (2021). Tumor reliance on cytosolic versus mitochondrial one-carbon flux depends on folate availability. CELL Metabol. 33, 190-198. pdf icon
  26. Breast Cancer Association Consortium et al. (2021). Breast cancer risk genes: association analysis in more than 113,000 women. N. Engl. J. Med. 384, 428-439. pdf icon

           2020
  27. Fu, Y., Cao, R., Schäfer, M., Stephan, S., Braspenning-Wesch, I., Schmitt, L., Bischoff, R., Müller, M., Schäfer, K., Vinzón, S.E., Rösl, F., Hasche, D. (2020). Expression of different L1 isoforms of Mastomys natalensis papillomavirus as mechanism to circumvent adaptive immunity. Elife 9, e57626. pdf icon
  28. Fachal et al. (2020). Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes. Nature Genet. 52, 56-73. pdf icon
  29. Escala-Garcia et al. (2020). A network analysis to identify mediators of germline-driven differences in breast cancer prognosis. Nature Commun.11, 312. pdf icon
  30. Feng et al. (2020). Transcriptome-wide association study of breast cancer risk by estrogen-receptor status. Genet. Epidemiol. 44, 442-468. pdf icon
  31. Manoochehri, M., Jones, M., Tomczyk, K., Fletcher, O., Schoemaker, M.J., Swerdlow, A.J., Borhani, N. & Hamann, U. (2020). DNA methylation of the long intergenic noncoding RNA 299 gene in triple-negative breast cancer: results from a prospective study. Sci. Rep. 10, 11762. pdf icon
  32. Barnes et al. (2020). Polygenic risk scores and breast and epithelial ovarian cancer risks for carriers of BRCA1 and BRCA2 pathogenic variants. Genet. Med. 22, 1653-1666. pdf icon
  33. Landi et al. (2020). Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility. Nature Genet. 52, 494-504. pdf icon
  34. Zhang et al. (2020). Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses. Nature Genet. 52, 572-581. pdf icon
  35. Silvestri et al. (2020). Characterization of the cancer spectrum in men with germline BRCA and BRCA2 pathogenic variants: Results from the consortium of investigators of modifiers of BRCA /2 (CIMBA). JAMA Oncol. 6,1218-1230. pdf icon
  36. Giardiello et al. (2020). Prediction and clinical utility of a contralateral breast cancer risk model. Breast Cancer Res. 21, 144. pdf icon
  37. Liu et al. (2020). Germline HOXB13 mutations p.G84E and p.R217C do not confer an increased breast cancer risk. Sci. Rep. 10, 9688. pdf icon
  38. Patel et al. (2020). Association of genomic domains in BRCA and BRCA2 with prostate cancer risk and aggressiveness. Cancer Res. 80, 624-638. pdf icon
  39. Stark, M.S., Denisova, E., Kays, T.A., Heidenreich, B., Rachakonda, S., Requena, C., Sturm, R.A., Soyer, H.P., Nagore, E. & Kumar, R. (2020). Mutation signatures in melanocytic nevi reveal characteristics of defective DNA repair. J. Invest. Dermatol. 140, 2093-2096. pdf icon
  40. Zhang et al. (2020). Assessment of polygenic architecture and risk prediction based on common variants across fourteen cancers. Nature Comm. 11, 3353. pdf icon
  41. Rashid, M.U., Muhammad, N., Khan, F.A., Shehzad, U., Naeemi, H., Malkani, N. & Hamann, U. (2020). Prevalence of RECQL germline mutations in Pakistani early-onset and familial breast cancer patients. Hered. Cancer Clin. Pract. 18, 25.Feng et al. (2020). Transcriptomewide association study of breast cancer risk by estrogenreceptor status. Genet. Epidemiol. 44, 442-468. pdf icon
  42. Kramer et al. (2020). Breast cancer polygenic risk score and contralateral breast cancer risk. Am. J. Hum. Genet. 107, 837-848. pdf icon
  43. Cardelli, M., Van Doorn, R., Larcher, L., Donato, M.D., Piacenza, F., Pierpaoli, E., Giacconi, R., Malavolta, M., Rachakonda, S., Gruis, N.A., Molven, A., Andresen, P.A., Pjanova, D., van den Oord, J.J., Provinciali, M., Nagore, E. & Kumar, R. (2020). Association of HERV-K and LINE-1 hypomethylation with reduced disease-free survival in melanoma patients. Epigenomics 12, 1689-1706. pdf icon
  44. Mesa, K.G., Bermejo, J.L., Torres, D., Gilbert, M., Plass, C. & Hamann, U. (2020). Genetic variability in the microRNA binding sites of BMPR1B, TGFBR1, IQGAP1, KRAS, SETD8 and RYR3 and risk of breast cancer in Colombian women. OncoTargets Ther. 13, 12281-12287. pdf icon
  45. Caini, S., Gandini, S., Botta, F., Tagliabue, E., Raimondi, S., Nagore, E., Zanna, I., Maisonneuve, P., Newton-Bishop, J., Polsky, D., Lazovich, D., Kumar, R., Kanetsky, P.A., Hoiom, V.A., Ghiorzo, P., Landi, M.T., Ribas, G., Menin, G., Stratigos, A.J., Palmieri, G., Guida, G., García-Borrón, J.C., Nan, H., Little, J., Sera, F., Puig, S., Fargnoli, M.C., on behalf of the M-SKIP study group. (2020). MC1R variants and cutaneous melanoma risk according to histological type, body site, and Breslow thickness: a pooled analysis from the M-SKIP project. Melanoma Res. 30, 500-510. pdf icon
  46. Vodenkova, S., Kroupa, M., Polivkova, Z., Musak, L., Ambrus, M., Schneiderova, M., Kozevnikovova, R., Vodickova, L., Rachakonda, S., Hemminki, K., Kumar, R. & Vodicka, P. (2020). Chromosomal damage and telomere length in peripheral blood lymphocytes of cancer patients. Oncol. Rep. 44, 2219-2230. pdf icon
  47. Hemminki, K., Srivastava, A., Rachakonda, S., Bandapalli, O., Nagore, E., Hemminki, A. & Kumar, R. (2020). Informing patients about their mutation tests: CDKN2A c.256G>A in melanoma as an example. Hered. Cancer Clin. Pract. 18, 15. pdf icon
  48. Pirker, C., Bilecz, A., Grusch, M., Mohr, T., Heidenreich, B., Laszlo, V., Stockhammer, P., Lötsch-Gojo, D., Gojo, J., Gabler, L., Spiegl-Kreinecker, S., Doeme, B., Steindl, A., Klikovits, T., Hoda, M.A., Jakopovic, M., Samarzija, M., Mohorcic, K., Kern, I., Kiesel, B., Brcic, L., Oberndorfer, F., Müllauer, L., Klepetko, W., Schmidt, W.M., Kumar, R., Hegedus, B. & Berger, W. (2020). Telomerase reverse transcriptase promoter mutations identify a genomically defined and highly aggressive human pleural mesothelioma subgroup. Clin. Cancer Res. 26, 3819-3830. pdf icon
  49. Pastor-Tomás, N., Martínez-Franco, A., Bañuls, J., Peñalver, J.C., Traves, V., García-Casado, Z., Requena, C., Kumar, R. & Nagore, E. (2020). Risk factors for the development of a second melanoma in patients with cutaneous melanoma. J. Eur. Acad. Dermatol. Venereol. 34, 2295-2302. pdf icon
  50. Vymetalkova, V., Rosa, F., Susova, S., Bendova, P., Levy, M., Buchler, T., Kral, J., Bartu, L., Vodickova, L., Hughes, D.J., Soucek, P., Naccarati, A., Kumar, R., Vodicka, P. & Pardini, B. (2020). Expression quantitative trait loci in ABC transporters are associated with survival in 5-FU treated colorectal cancer patients. Mutagenesis 35, 273-281. pdf icon
  51. Srinivas, N., Rachakonda, S. & Kumar, R. (2020). Telomeres and telomere length: a general overview. Cancers 12, 558. pdf icon
  52. Spassova, I., Ugurel, S., Terheyden, P., Sucker, A., Hassel, J.C., Ritter, C., Kubat, L., Habermann, D., Farahpour, F., Saeedghalati, M., Peiffer, L., Kumar, R., Schrama, D., Hoffmann, D., Schadendorf, D. & Becker, J.C. (2020). Predominance of central memory T cells with high T-cell receptor repertoire diversity is associated with response to PD-1/PD-L1 inhibition in Merkel cell carcinoma. Clin. Cancer Res. 26, 2257-2267. pdf icon
  53. Maturo, M.G., Rachakonda, S., Heidenreich, B., Pellegrini, C., Srinivas, N., Requena, C., Serra-Guillen, C., Llombart, B., Sanmartin, O., Guillen, C., Di Nardo, L., Peris, K., Fargnoli, M.C., Nagore, E. & Kumar R. (2020). Coding and noncoding somatic mutations in candidate genes in basal cell carcinoma. Sci. Rep. 10, 8005. pdf icon
  54. Srinivas, N., Neittaanmäki, N., Heidenreich, B., Rachakonda, S., Karppinen, T.T., Grönroos, M., Tani, T.T., Salmivuori, M., Snellman, E., Hemminki, K. & Kumar, R. (2020). TERT promoter mutations in actinic keratosis before and after treatment. Int. J. Cancer 146, 2932-2934. pdf icon
  55. Salgado, C., Oosting, J., Janssen, B., Kumar, R., Gruis, N. & van Doorn, R. (2020). Genome-wide characterization of 5-hydoxymethylcytosine in melanoma reveals major differences with nevus. Genes Chr. Cancer 59, 366-374. pdf icon
  56. Jeske, R., Reininger, D., Turgu, B., Brauer, A., Harmel, C., de Larrea-Baz, N.F., Martín, V., Moreno, V., Kogevinas, M., Pollán, M., Hoheisel, J.D., Waterboer, T., Butt, J., Aragonés, N. & Hufnagel, K. (2020). Development of Helicobacter pylori whole-proteome arrays and identification of serological biomarkers for non-cardia gastric cancer in the MCC-Spain study. Cancer Epidem. Biomarkers Prev. 29, 2235-2242. pdf icon
  57. Ghassem-Zadeh, S., Hufnagel, K., Bauer, A.S., Frossard, J.-L., Yoshida, M., Kutsumi, H., Acha-Orbea, H., Neulinger-Munoz, M., Vey, J., Eckert, C., Strobel, O., Hoheisel, J.D. & Felix, K. (2020). Novel autoantibody signatures in sera of patients with pancreatic cancer, chronic pancreatitis and autoimmune pancreatitis; a protein microarray profiling approach. Int. J. Mol. Sci. 21, 2403. pdf icon
  58. Manoochehri, M., Wu, Y., Giese, N.A., Strobel, O., Kutschmann, S., Haller, F., Hoheisel, J.D., Moskalev, E.A., Hackert, T. & Bauer, A.S. (2020). SST gene hypermethylation acts as a pan-cancer marker for pancreatic ductal adenocarcinoma and multiple other tumors; toward its use for blood-based diagnosis. Mol. Oncol. 14, 1252-1267. pdf icon
  59. Al-Shaheri, F.N., Al-Shamid, K.M., Gamale, E.H., Mahasnehf, A.A. & Ayoub, N.M. (2020). Association of DNA repair gene polymorphisms with colorectal cancer risk and treatment outcomes. Exp. Mo. Pathol. 113, 104364. pdf icon
  60. Pirona, A.C., Oktriani, R., Boettcher, M. & Hoheisel, J.D. (2020). Process for an efficient lentiviral cell transduction. Biol. Methods Protoc. 2020, bpaa005. pdf icon
  61. Cheng, X., Haeberle, S., Shytaj, I.-L., Gama-Brambila, R., Theobald, J., Ghafoory, S., Wölker, J., Basu, U., Schmidt, C., Timm, A., Taskova K., Bauer, A.S., Hoheisel, J.D., Tsopoulidis, N., Fackler, O.T., Savarino, A., Andrade-Navarro, M.A., Ott, I., Lusic, M., Hadaschik, E.N. & Wölfl, S. (2020). NHC-gold compounds mediate immune suppression through induction of AHR-TGFβ1 signalling in vitro and in scurfy mice. Comm. Biol. 3, 10. pdf icon
  62. Morath, C., Schmitt, A., Kleist, C., Daniel, V., Opelz, G., Süsal, C., Ibrahim, E., Kälble, F., Speer, C., Nusshag, C., da Silva, L.P., Sommerer, C, Wang, L, Ni, M., Hückelhoven-Krauss, A., Czock, D., Merle, U., Mehrabi, A., Sander, A., Hackbusch, M., Eckert, C., Waldherr, R., Schnitzler, P., Dreger, P., Müller-Tidow, C., Hoheisel, J.D., Mustafa, S., Alhamdani, M.S.S., Bauer, A.S., Reiser, J., Zeier, M., Schmitt, M., Schaier, M. & Terness, P. (2020). Phase-I trial of donor-derived modified immune cell infusion in kidney transplantation. J. Clin. Invest. 130, 2364-2376. pdf icon
  63. Miao, B., Bauer, A.S., Hufnagel, K., Wu, Y., Trajkovic-Arsic, M., Pirona, A.C., Giese, N., Taipale, J., Siveke, J.T., Hoheisel, J.D. & Lueong, S. (2020). The transcription factor FLI1 promotes cancer progression by affecting cell cycle regulation. Int. J. Cancer 147, 189-201. pdf icon
  64. Al Alawi, R., Alhamdani, M.S.S., Hoheisel, J.D. & Baqi, Y. (2020). Antifibrotic and tumor microenvironment modulating effect of date palm fruit (Phoenix dactylifera L.) extracts in pancreatic cancer. Biomed. Pharmacother. 121, 109522. pdf icon

           2019
  65. Shen, N., Du, J., Zhou, H., Pan, Y., Hoheisel, J.D., Jiang, Z., Xiao, L., Tao, Y. & Mo, X. (2019). A diagnostic panel of DNA methylation biomarkers for lung adenocarcinoma. Front. Oncol., in press. pdf icon
  66. Ali, D.M., Ansari, S.S., Zepp, M., Knapp-Mohammady, M. & Berger, M.R. (2019). Optineurin down-regulation induces endoplasmic reticulum stress, chaperone-mediated autophagy, and apoptosis in pancreatic cancer cells. Cell Death Disc. 5, 128. pdf icon
  67. Barkowsky, G., Lemster, A.-L., Pappesch, R., Krüger, S., Schröder, A., Jacob, A., Kreikemeyer, B. & Patenge, N. (2019). Influence of different cell-penetrating peptides on the antimicrobial efficiency of antisense Peptide Nucleic Acids (PNAs) in Streptococcus pyogenes. Mol. Ther. Nucl. Acids 18, 444-454. pdf icon
  68. Kunz, K., Ortale, A., Mücke, N., Zinner, K. & Hoheisel, J.D. (2019). Nanobody stability engineering by employing the ΔTm shift; a comparison with apparent rate constants of heat-induced aggregation. Protein Eng. Des. Sel. 32, gzz017. pdf icon
  69. Weidmann, J., Schnölzer, M., Dawson, P.E. & Hoheisel, J.D. (2019). Copying life: synthesis of an enzymatically active mirror-image DNA-ligase made of D-amino acids. CELL Chem. Biol. 26, 645-651. pdf icon
  70. Bakadlag, R., Jandaghi, P., Hoheisel, J.D. & Riazalhosseini, Y. (2019). The potential of dopamine receptor 2 (DRD2) as a therapeutic target for tackling pancreatic cancer. Expert Opin. Ther. Tar. 23, 365-367. pdf icon
  71. Amini, M., Foroughi, K., Talebi, F., Haji, H.A., Kamali, F., Jandaghi, P., Hoheisel, J.D. & Manoochehri, M. (2019). GHSR DNA hypermethylation is a new epigenetic biomarker for gastric adenocarcinoma and beyond. J. Cell. Physiol. 234, 15320-15329. pdf icon
  72. Marzoq, A.J., Mustafa, S., Heidrich, L., Hoheisel, J.D. & Alhamdani, A.S.S. (2019). Impact of the secretome of activated pancreatic stellate cells on growth and differentiation of pancreatic tumour cells. Sci. Rep. 9, 5303. pdf icon
  73. Visvanathan, A., Patil, V., Abdulla, S., Hoheisel, J.D. & Somasundaram, K. (2019). N6-Methyladenosine landscape of glioma stem-like cells: METTL3 plays a crucial role in post-transcriptional RNA metabolism. Genes 10, 141. pdf icon
  74. Bermejo, J.L., Huang, G., Manoocheri, M., Mesa, K.G., Schick, M., Silos, R.G., Ko, Y.D., Brüning, T., Brauch, H., Lo, W.-Y., Hoheisel, J.D. & Hamann, U. (2018). Long intergenic non-protein coding RNA 299 methylation in peripheral blood is a biomarker for triple-negative breast cancer. Epigenomics 11, 81-93. pdf icon
  75. Hufnagel, K., Reininger, D., Ng, S.W., Gassert, N., Rohland, J.K., Shahryarhesami, S., Bauer, A.S., Waterboer, T. & Hoheisel, J.D. (2019). In situ, cell-free protein expression on microarrays and their use for the detection of immune responses. Bio-protocol 9, e3152. pdf icon

           2018
  76. Di, C., Syafrizayanti, Y., Zhang, Q., Chen, Y., Liu, Y., Wang, Y., Zhang, X., Liu, Y., Sun, C., Zhang, H. & Hoheisel, J.D. (2018). Function, clinical application, and strategies of pre-mRNA splicing in cancer. Cell Death Differ. 26, 1181-1194. pdf icon
  77. Bure, I., Geer, S., Knopf, J., Roas, M., Henze, S., Ströbel, P., Agaimy, A., Wiemann, S., Hoheisel, J.D., Hartmann, A., Haller, F., Moskalev, E.A. (2018). Long non-coding RNA HOTAIR is upregulated in an aggressive subgroup of gastrointestinal stromal tumors (GIST) and mediates the establishment of gene-specific DNA-methylation patterns. Genes Chrom. Cancer 57, 584-597. pdf icon
  78. Patry, C., Remme, C., Betzen, C., Tonshoff, B., Yard, B.A., Beck, G. & Rafat, N. (2018). VCAM-1 expression is upregulated by CD34+/CD133+-stem cells derived from septic patients. PLOS ONE 13, e0195064. pdf icon
  79. Patry, C., Betzen, C., Fathalizadeh, F., Fichtner, A., Westhoff, J.H., Fleming, T., Eckstein, V., Bruckner, T., Bielaszewska, M., Karch, H., Hoffmann, G.F., Tonshoff, B. & Rafat, N. (2018). Endothelial progenitor cells accelerate endothelial regeneration in an in vitro model of Shigatoxin-2a-induced injury via soluble growth factors. Am. J. Physiol. Renal Physiol. 315, F861-F869. pdf icon
  80. Youns, M., ElKhoely, A. & Kamel, R. (2018). The growth inhibitory effect of gambogic acid on pancreatic cancer cells. Naunyn-Schmiedebergs Arch. Pharmacol. 391, 551-560. pdf icon
  81. Goerke, S., Breitling, J., Zaiss, M., Windschuh, J., Kunz, P., Schuenke, P., Paech, D., Longo, D.L., Klika, K.D., Ladd, M.E. & Bachert, P. (2018). Dual-frequency irradiation CEST-MRI of endogenous bulk mobile proteins. NMR Biomed. 31, e3920. pdf icon
  82. Hoheisel, J.D. (2018). DNA-Microarray Technology. Bioanalytics (Lottspeich, E. & Engels, J.W., eds.), Elsevier, Heidelberg, 945-957.
  83. Pausch, T., Adolph, S., Felix, K., Bauer, A.S., Bergmann, F., Werner, J. & Hartwig, W. (2018). Antimicrobial peptide Human Neutrophil Peptide 1as a potential link between chronic inflammation and ductal adenocarcinoma of the pancreas. Pancreas 47, 561-567. pdf icon
  84. Kunz, P., Zinner, K., Mücke, N., Bartoschik, T., Muyldermans, S. & Hoheisel, J.D. (2018). The structural basis of nanobody unfolding reversibility and thermoresistance. Sci. Rep. 8, 7934.pdf icon
  85. Hufnagel, K., Lueong, S., Willhauck-Fleckenstein, M., Hotz-Wagenblatt, A., Miao, B., Bauer, A., Michel, A., Butt, J., Pawlita, M., Hoheisel, J.D. & Waterboer, T. (2018). Immunoprofiling of Chlamydia trachomatis using whole-proteome microarrays generated by on-chip in situ expression. Sci. Rep. 8, 7503. pdf icon 
  86. García, T., Villablanca, A., Matthäus, F., Baeza, M., Tittarelli, A., Pereda, C., Lillo, F., Gleisner, M.A., Osorio, F., González, F.E., López, M.N., Hoheisel, J.D., Norgauer, J., Gebicke-Haerter, P. & Salazar-Onfray, F. (2018). Molecular signatures associated with tumor-specific immune response in melanoma patients treated with dendritic cell-based immunotherapy. Oncotarget 9, 17014-17027. pdf icon
  87. Throm, V.M., Männle, D., Giese, T., Bauer, A.S., Gaida, M.M., Kopitz, J., Bruckner, T., Plaschke, K., Grekova, S.P., Felix, K., Hackert, T., Giese, N.A. & Strobel, O. (2018). Endogenous CHRNA7-ligand SLURP1 as a potential tumor suppressor and anti-nicotinic factor in pancreatic cancer. Oncotarget 9, 11734-11751. pdf icon
  88. Bauer, A.S., Nazarov, P.V., Giese, N.A., Beghelli, S., Heller, A., Greenhalf, W., Costello, E., Muller, A., Bier, M., Strobel, O., Hackert, T., Vallar, L., Scarpa, A., Büchler, M.W., Neoptolemos, J.P., Kreis, S. & Hoheisel, J.D. (2018). Transcriptional variations in the wider peritumoral tissue environment of pancreatic cancer. Int. J. Cancer 142, 1010-1021. pdf icon
  89. Adam, S., Knapp-Mohammady, M., Yi, J. & Bondar, A.-N. (2018). Revised CHARMM force field parameters for iron-containing cofactors of photosystem II. J. Comp. Chem. 39, 7-20. pdf icon

           2017
  90. Kaistha, B.P., Krattenmacher, A., Fredebohm, J., Schmidt, H., Behrens, D., Widder, M., Hackert, T., Strobel, O., Hoheisel, J.D., Gress, T.M. & Buchholz, M. (2017). The deubiquitinating enzyme USP5 promotes pancreatic cancer via modulating cell cycle regulators. Oncotarget 8, 66215-66225. pdf icon
  91. Persson, H., Sokilde, R., Pirona, A.C. & Rovira, C. (2017). Preparation of highly multiplexed small RNA sequencing libraries. Biotechniques 63, 57-64. pdf icon
  92. Persson, H., Sokilde, R., Hakkinen, J., Pirona, A.C., Vallon-Christersson, J., Kvist, A., Mertens, F., Borg, A., Mitelman, F., Hoglund, M. & Rovira, C. (2017). Frequent miRNA-convergent fusion gene events in breast cancer. Nature Comm. 8, 788. pdf icon
  93. Kunz, P., Flock, T., Soler, N., Zaiss, M., Vincke, C., Sterckx, Y., Kastelic, D., Muyldermans, S. & Hoheisel, J.D. (2017). Exploiting sequence and stability information for directing nanobody stability engineering. BBA-Gen. Subjects 1861, 2196-2205. pdf icon
  94. Chakraborty, C., Fadda, A., Erben, E., Lueong, S., Hoheisel, J.D., Mugo, E. & Clayton, C. (2017). Interactions of CAF1-NOT complex components from Trypanosoma brucei. F1000Research 6, 858. pdf icon
  95. Helwa, R., Heller, A., Knappskog, S. & Bauer, A.S. (2017). Tumor cells interact with red blood cells via galectin-4 – a short report. Cell. Oncol. 40, 401-409.
  96. Mustafa, S.A., Pan, L., Marzoq, A., Fawaz, M., Sander, L., Rückert, F., Schrenk, A., Hartl, C., Uhler, R., Yildirim, A., Strobel, O., Hackert, T., Giese, N., Büchler, M.W., Hoheisel, J.D. & Alhamdani, M.S.S. (2017). Comparison of the tumour cell secretome and patient sera for an accurate serum-based diagnosis of pancreatic ductal adenocarcinoma. Oncotarget 8, 11963-11976. pdf icon
  97. Syafrizayanti, Lueong, S.S., Di, C., Schäfer, J.V., Plückthun, A. & Hoheisel, J.D. (2017). Personalised proteome analysis by means of protein microarrays made from individual patient samples. Sci. Rep. 7, 39756. pdf icon

           2016
  98. Jandaghi, P., Najafabadi, H.S., Bauer, A.S., Papadakis, A.I., Fassan, M., Hall, A., Monast, A., von Knebel Doeberitz, M., Neoptolemos, J.P., Costello, E., Greenhalf, W., Scarpa, A., Sipos, B., Auld, D., Lathrop, M., Park, M., Büchler, M.W., Strobel, O., Hackert, T., Giese, N.A., Zogopoulos, G., Sangwan, V., Huang, S., Riazalhosseini, Y. & Hoheisel, J.D. (2016). Dopamine receptor D2 is critical for pancreatic ductal adenocarcinoma and promises pharmacological therapy by already established antagonists. Gastroenterology 151, 1218-1231. pdf icon
  99. Dror, S., Sander, L., Schwartz, H., Sheinboim, D., Barzilai, A., Dishon, Y., Apcher, S., Golan, T., Greenberger, S., Barshack, I., Malcov, H., Zilberberg, A., Levin, L., Nessling, M., Friedmann, Y., Igras, V., Barzilay, O., Vaknine, H., Brener, R., Zinger, A., Schroeder, A., Gonen, P., Khaled, M., Erez, N., Hoheisel, J.D. & Levy, C. (2016). Melanoma miRNA trafficking triggers the tumor primary niche formation. Nature Cell Biol. 18, 1006-1017. pdf icon
  100. Pan, Y., Shen, N, Jung-Klawitter, S., Betzen, C., Hoffmann, G.F., Hoheisel, J.D. & Blau, N. (2016). CRISPR RNA-guided FokI nucleases repair a PAH variant in a phenylketonuria model. Sci. Rep. 6, 35794. pdf icon
  101. Botla, S.K., Savant, S., Jandaghi, P., Bauer, A.S., Mücke,, O., Moskalev, E.A., Neoptolemos, J.P., Costello, E., Greenhalf, W., Scarpa, A., Gaida, M.M., Büchler, M.W., Strobel, O., Hackert, T., Giese, N.A., Augustin, H.G. & Hoheisel, J.D. (2016). Early epigenetic down-regulation of microRNA-192 expression promotes pancreatic cancer progression. Cancer Res. 76, 4149-4159. pdf icon
  102. Bakdash, G., Buschow, S.I., Gorris, M., Halilovic, A., Hato, S.V., Sköld, A.E., Schreibelt, G., Sittig, S.P., Torensma, R., Duiveman-de Boer, T., Schröder, C., Smits, E.L.J., Figdor, C.G. & de Vries, I.J.M. (2016). Expansion of a BDCA1+CD14+ myeloid cell population in melanoma patients may attenuate the efficacy of dendritic cell vaccines. Cancer Res. 76, 4332-4346. pdf icon
  103. Kamhieh-Milz J.,, Mustafa, S.A., Sterzer, V., Khorramshahi, O., Celik, H., Keski, S., Movassaghi, K., Hoheisel, J.D., Alhamdani, M.S.S. & Salama, A. (2016). Identification of 68 dynamic factors in the supernatant of platelet concentrates. J. Proteomics 150, 74-85. pdf icon
  104. Sill, M. Schröder, C., Shen, Y., Marzoq, A., Komel, R., Hoheisel, J.D., Nienhüser, H., Schmidt, T. & Kastelic, D. (2016). Protein profiling gastric cancer and neighboring control tissues using high-content antibody microarrays. Microarrays 5, 19. pdf icon
  105. Kibat, J., Schirrmann, T., Knape, M.J., Helmsing, S., Meier, D., Hust, M., Schröder, C., Bertinetti, D., Winter, G., Pardes, K., Funk, M., Vala, A., Giese, N., Herberg, F.W., Dübel, S. & Hoheisel, J.D. (2016). Utilisation of antibody microarrays for the selection of specific and informative antibodies from recombinant library binders of unknown quality. New Biotechnol. 33, 574-581. pdf icon
  106. Weidmann, J., Dimitrijević, E., Hoheisel, J.D. & Dawson, P.E. (2016). A Boc SPPS-compatible linker for the synthesis of peptide o-aminoanilides. Org. Lett. 18, 164-167. pdf icon
  107. Cheng, X., Kim, J.Y., Gafroory, S., Duvaci, T., Rafiee, R., Theobald, J., Alborzinia, H., Holenya, P., Fredebohm, J., Merz, K.-H., Mehrabi, A., Hafezi, M., Saffari, A., Eisenbrand, G., Hoheisel, J.D. & Wölfl, S. (2016). Methylisoindigo preferentially kills cancer stem cells by interfering cell metabolism via inhibition of LKB1 and activation of AMPK in PDACs. Mol. Oncol.10, 806-824. pdf icon
  108. Bal, G., Futschik, M.E., Hartl, D., Ringel, F., Kamhieh-Milz, J., Sterzer, V., Hoheisel, J.D., Alhamdani, M.S.S. & Salama, A. (2016). Identification of novel biomarkers in chronic autoimmune thrombocytopenia (ITP) by microarray-based serum protein profiling. Br. J. Haematology 4, 602-615. pdf icon
  109. Lueong, S., Merce, C., Fischer, B., Hoheisel, J.D. & Erben, E.D. (2016). Gene expression regulatory networks in Trypanosoma brucei; the role of the mRNA-binding proteome. Mol. Microbiol. 100, 457-471. pdf icon
  110. Betzen, C., Plotniki, K., Fathalizadeh, F., Pappan, K., Fleming, T., Bielaszewska, M., Karch, H., Tönshoff, B. & Rafat, N. (2016). Shiga toxin-2a-induced endothelial injury in hemolytic uremic syndrome: a metabolomic analysis. J. Infect. Dis., 213, 1031-1040. pdf icon
  111. Helwa, R., Ramadan, M., Abdel-Wahab, A.-H.A., Knappskog, S. & Bauer, A.S. (2016). Promoter SNPs rs116896264 and rs73933062 form a distinct haplotype and are associated with galectin-4 overexpression in colorectal cancer. Mutagenesis 31, 401-408. pdf icon

  112.        2015
  113. Olea Jr., C., Weidmann, J., Dawson, P.E. & Joyce, G.F. (2015). An L-RNA aptamer that binds and inhibits RNase. Chem. Biol. 22, 1437-1441. pdf icon
  114. Nijaguna, M.B., Schröder, C., Patila, V., Hegdec, A.S., Chandramoulid, B.A., Arivazhagand, A., Santoshe, V., Hoheisel, J.D. & Somasundaram, K. (2015). Definition of a serum marker panel for glioblastoma discrimination and identification of Interleukin 1β in the microglial secretome as a novel mediator of endothelial cell survival induced by C-Reactive Protein. J. Proteomics 128, 251-261. pdf icon
  115. Mock, A., Warta, R., Geisenberger, C., Bischoff, R., Schulte, A., Lamszus, K., Stadler, V., Felgenhauer, T., Schichor, C., Schwartz, C., Matschke, J., Jungk, C., Ahmadi, R., Sahm, F., Capper, D., Glass, R., Tonn, J.-C., Westphal, M., von Deimling, A., Unterberg, A., Bermejo, J.L. & Herold-Mende, C. (2015). Printed peptide arrays identify prognostic TNC serumantibodies in glioblastoma patients. Oncotarget 6, 13579-13590. pdf icon
  116. Heller, A., Gaida, M.M., Giese, T., Scarpa, A., Keleg, S., Neoptolemos, J.P., Hackert, T., Strobel, O., Hoheisel, J.D., Giese, N.A. & Bauer, A.S. (2015). Stratification of pancreatic tissue samples for molecular studies: RNA-based cellular annotation procedure. Pancreatology 15, 423-431. pdf icon
  117. Stoy, C., Sundaram, A., Garcia, M.R., Wang, X. Seibert, O., Zota, A., Wendler, S., Männle, D., Hinz, U., Sticht, C., Muciek, M., Gretz, N., Rose, A., Greiner, V., Hofmann, T., Bauer, A., Hoheisel, J.D., Berriel Diaz, M., Gaida, M.M., Werner, J., Schafmeier, T., Strobel, O. & Herzig, S. (2015). Transcriptional co-factor transducin beta-like (TBL) 1 acts as a checkpoint in pancreatic cancer malignancy. EMBO Mol. Med. 7, 1048-1062. pdf icon
  118. Betzen, B., Alhamdani, M.S.S., Lueong, S., Schröder, C., Stang, A. & Hoheisel, J.D. (2015). Clinical proteomics; promises, challenges and limitations of affinity arrays. Proteomics Clin. Appl. 9, 342-347. pdf icon
  119. Bradbury, A., Plückthun, A., Anderson, S., Arap, W., Baralle, F.E., Beck, A., Begley, G., Benet, L., Benhar, I., Blackshaw, S., Blow, N., Boeke, J., Borrebaeck, C., Burrone, O.E., Burton, D., Campbell, E., Carter, P., Cattaneo, A., Cesareni, G., Chakraborti, S., Chalmers, A.D., Chaput, J., Chasteen, L., Chester, K.A., Christ, D., Clark, M., Close, D., D'Angelo, S., Dimitrov, D., Dübel, S., Edwards, A., Ellington, A., Feldhaus, M., Ferrara, F., Freeman, N.L., Fuh, G., Gaiotto, T., Gatlin, C.L., Georgiou, G., Glanville, J., Gold, L., Gräslund, S., Griffiths, A.D., Haab, B., Hoheisel, J.D., Hornsby, M., Hudson, P., Hust, M., Huston, J.S., Kay, B., Kim, K.M., Kiss, C., Koide, S., Kossiakoff, A., LaBaer, J., Landegren, U., Lane, D., Larrick, J., Lee, S., Lefranc, M.-P., Liu, B., Lou, J., Lund-Johansen, F., Macor, P., Magee, M., Marasco, W., Marks, J., Mathias, S., McCafferty, J., Montelione, G., Neri, D., Nishimura, S.L., Not, T., Oprea, T., Pai, J.K., Parren, P., Pasqualini, R., Pavlik, P., Qiu, J., Quarmby, V., Reichert, J., Rimm, D., Santoro, C., Sblattero, D., Schirrmann, T., Scott, J., Sechi, S., Sidhu, S., Siegel, R., Sitia, R., Skerra, A., Soh, H., Song, B.D., Song, P., Staquicini, F.I., Stoevesandt, O., Taussig, M., Tawfik, D.F., Trimmer, J., Uhlen, M., Velappan, N., Waldman, H., Waldo, G.S., Ward, S., Weiner, M., Wells, J., Wittrup, D., Wu, A., Wu, H., Yoo, J.-S., Zhou, Y. (2015). Standardize antibodies used in research. Nature 518, 27-29. pdf icon
  120. Moskalev, E.A., Jandaghi, P., Fallah, M., Manoocheri, M., Botla, S.K., Kolychev O.V., Nikitin, E.A., Bubnov, V.V., von Knebel Doeberitz, M., Strobel, O., Hackert, T., Büchler, M.W., Giese, N., Bauer, A., Muley, T., Warth, A., Schirmacher, P., Haller, F., Hoheisel, J.D. & Riazalhosseini, Y. (2015). GHSR DNA hypermethylation is a common epigenetic alteration of high diagnostic value in a broad spectrum of cancers. Oncotarget 6, 4418-4427. pdf icon
  121. Jandaghi, P., Hoheisel, J.D. & Riazalhosseini, Y. (2015). GHSR hypermethylation: a promising pan-cancer marker. Cell Cycle 14, 689-690. pdf icon
  122. Haller, F., Zhang, J.D., Moskalev, E.A., Braun, A., Otto, C., Geddert, H., Riazalhosseini, Y., Ward, A., Balwierz, A., Schäfer, I.-M., Cameron, S., Ghadimi, M., Agaimy, A., Fletcher, J.A., Hoheisel, J.D., Hartmann, A., Werner, M., Wiemann, S. & Sahin, Ö. (2014). Combined DNA methylation and gene expression profiling in gastrointestinal stromal tumors (GISTs) reveals hypomethylation of SPP1 as an independent prognostic factor. Int. J. Cancer 136, 1013-1023. pdf icon
  123. Simo, G, Lueong, S., Grebaut, P., Guny, G. & Hoheisel, J.D. (2015). Micro RNA expression profiles in peripheral blood cells of rats that were experimentally infected with Trypanosoma congolense and different Trypanosoma brucei subspecies. Microb. Infect. 17, 596-608. pdf icon
  124. Paizs, B. (2015). A divide-and-conquer approach to compute collision cross sections in the projection approximation method. Int. J. Mass. Spectrom. 378, 360-363. pdf icon
  125. Hernandez, O., Paizs, B., & Maître, P. (2015). Rearrangement chemistry of an ions probed by IR spectroscopy. Int. J. Mass. Spectrom. 377, 172-178. pdf icon
  126. Roth, P., Keller, A., Hoheisel, J.D., Codo, P., Bauer, A.S., Backes, C., Leidinger, P., Meese, E., Thiel, E., Korfel, A & Weller, M. (2014). Differentially regulated miRNAs as prognostic biomarkers in the blood of PCNSL patients. Eur. J. Cancer 51, 382-390. pdf icon

           2014
  127. Keller, A., Leidinger, B., Vogel, B., Backes, C., ElSharawy, A., Galata, V., Müller,S., Marquart, S., Schrauder, M.G., Strick, R., Bauer, A., Wischhusen, J., Beier, M., Kohlhaas, J., Katus, H.A., Hoheisel, J.D., Franke, A., Meder, B. & Meese, E. (2014). miRNAs can be generally associated with human pathologies as exemplified for miR-144*. BMC Med. 12, 224. pdf icon
  128. Ricoult, S.G., Nezhad, A.S., Knapp-Mohammady, M., Kennedy, T.E. & Juncker, D. (2014). Humidified microcontact printing of proteins: universal patterning of proteins on both low and high energy surfaces. Langmuir 30, 12002–12010. pdf icon
  129. Hoheisel, J.D. (2014). Die Nutzung von Protein-Microarrays zur Personalisierten Proteomanalyse. labor&more 10/14, 10-13. pdf icon
  130. Wolf, J., Müller-Decker, K., Flechtenmacher, C., Zhang, F., Shahmoradgoli, M., Mills, G.B., Hoheisel, J.D. & Böttcher, M. (2014). SALL1 acts as tumor suppressor and regulator of CDH1. Oncogene 33, 4273-4278. pdf icon
  131. Keleg, S., Titov, A., Heller, A., Giese, T., Tjaden, C., Ahmad, S.S., Gaida, M.M., Bauer, A.S., Werner, J. & Giese, N.A. (2014). Chondroitin sulfate proteoglycan CSPG4 as a novel hypoxia-sensitive marker in pancreatic tumors. PLOS ONE 9, e100178. pdf icon
  132. Liesz, A., Bauer, A., Hoheisel, J.D. & Veltkamp, R. (2014). Intracerebral Interleukin-10 injection modulates post-ischemic neuroinflammation: an experimental microarray study. Neuroscience Lett. 579, 18-23. pdf icon
  133. Erben, E., Lueong, S. Fadda, A., Hoheisel, J.D. & Clayton, C. (2014). A genome-wide tethering screen reveals novel potential post-transcriptional regulators in Trypanosoma brucei. PLOS Pathogens 10, e1004178. pdf icon
  134. Srinivasan, H., Allory, Y., Sill, M., Vordos, D., Alhamdani, M.S.S., Radvanyi, F., Hoheisel, J.D. & Schröder, D. (2014). Prediction of recurrence of non muscle-invasive bladder cancer by means of a protein signature identified by antibody microarray analyses. Proteomics 14, 1333-1342. pdf icon
  135. Syafrizayanti, Betzen, C., Hoheisel, J.D. & Kastelic, D. (2014). Methods for analysing and quantifying protein-protein interactions. Exp. Rev. Prot. 11, 107-120.
  136. Muda, K., Bertinetti, D., Gesellchen, F., Hermann, J.S., von Zweydorf, F., Geerlof, A., Jacob, A., Ueffing, M., Gloeckner, C.J. & Herberg, F.W. (2014). The Parkinson related LRRK2 mutation R1441C/G/H impairs PKA phosphorylation of LRRK2 and disrupts its interaction with 14-3-3. Proc. Natl. Acad. Sci. USA 111, E34-E43. pdf icon 
  137. Böttcher, M., Lawson, A., Ladenburger, V., Fredebohm, J., Wolf, J., Hoheisel, J.D., Frezza, C. & Shlomi, T. (2014). High throughput synthetic lethality screen reveals a tumorigenic role of adenylate cyclase in fumarate hydratase-deficient cancer cells. BMC Genomics 15, 158. pdf icon
  138. Dutruel, C., Bergmann, F., Rooman, I., Zucknick, M., Weichenhan, D., Rachakonda, P.S., Bauer, A., Giese, N., Hong, C., Xie, H., Costello, J., Hoheisel, J.D., Kumar, R., Rehli, M., Schirmacher, P., Werner, J., Plass, C., Popanda, O. & Schmezer, P. (2014). Early epigenetic downregulation of WNK2 kinase during pancreatic ductal adenocarcinoma development. Oncogene 33, 3401-3410. pdf icon
  139. Hernandez, O., Pulay, P., Maître, P. & Paizs, B. (2014). Zundel-type H-bonding in biomolecular ions. J. Am. Soc. Mass Spectrom. 25, 1511-1514.
  140. Ragusa, M., Maugeri, M., Statello, L., Barbagallo, C., Passanisi, R., Alhamdani, M.S.S., Li Destri, G., Cappellani, A., Barbagallo, D., Scalia, M., Valadi, H., Hoheisel, J.D., Di Pietro, C. & Purrello, M. (2014). Variations in the miRNA and protein content between colorectal cancer cells and their exosomes following Cetuximab treatment; biomolecular and translational implications. Oncoscience 1, 132-157. pdf icon
  141. Märkle, F., Löffler, F.F., Schillo, S.,, Förtsch, T., Münster, B., Striffler, J., Schirwitz, C., Bischoff, F.R., Breitling, F. & Nesterov-Müller, A. (2014). High-density peptide arrays with combinatorial laser fusing. Adv. Mater. 26, 3730-3734.
  142. Milne R., La Vecchia, C., Van Steen, K., Hahn, S., Buchholz, M., Costello, E., Esposito, I., Hoheisel, J.D., Lange, B., Lopez-Bigas, N., Michalski, C.W., Real, F.X, Brand, A. & Malats, N. (2014). EU Pancreas - an integrated European platform for pancreas cancer research: from basic science to clinical and public health interventions for a rare disease. Public Health Genomics 16, 305-312. pdf icon

           2013
  143. Wolf, J., Dewi, D., Fredebohm, J., Müller-Decker, K., Flechtenmacher, C., Hoheisel, J.D., Böttcher, M. (2013). A mammosphere formation RNAi screen reveals that ATG4A promotes a breast cancer stem-like phenotype. Breast Cancer Res. 15, R109. pdf icon
  144. Lueong, S.S., Hoheisel, J.D. & Alhamdani, M.S.S. (2013). Protein microarrays as tools for functional proteomics: achievements, promises and challenges. J. Prot. Bioinf. 07, 004. pdf icon
  145. Marzoq, A.J., Giese, N., Hoheisel, J.D. & Alhamdani, M.S.S. (2013). Proteome variations in pancreatic stellate cells upon stimulation with pro-inflammatory factors. J. Biol. Chem. 288, 32517-32527. pdf icon
  146. Schröder, C., Srinivasan, H., Sill, M., Linseisen, J., Fellenberg, K., Becker, N., Nieters, A. & Hoheisel, J.D. (2013). Plasma protein analysis of patients with different B-cell lymphomas with high-content antibody microarrays. Proteomics Clin. Appl. 7, 802-812. pdf icon
  147. Fredebohm, J., Wolf, J., Hoheisel, J.D. & Böttcher, M. (2013). Depletion of RAD17 sensitizes pancreatic cancer cells to gemcitabine. J. Cell Sci. 126, 3380-3389. pdf icon
  148. Rodenburg, W., Kutschmann, S., Pennings, J., Kifle, S. & Schröder, C. (2013). Antikörper-Mikroarrays: Vergleich von Blutproteinen immundefizienter und -kompetenter Mäuse. BIOspektrum 19, 748-751. pdf icon
  149. Wolf, R.J., Hilger, R.A., Werner, J., Hoheisel, J.D. & Holtrup, F. (2013). In vivo activity and pharmacokinetics on nemorosone on pancreatic cancer xenografts. PLoS ONE 8, e74555. pdf icon
  150. Lueong, S., Simo, G., Jamonneau, V., Bucheton, B., Hoheisel, J.D. & Clayton, C. (2013). The miRNA and mRNA signatures of peripheral blood cells in humans infected with Trypanosoma brucei gambiense. PLoS ONE 8, e67312. pdf icon
  151. Rachakonda, P.S., Bauer, A.S., Xie, H., Campa, D., Rizzato, C., Canzian, F., Beghelli, S., Greenhalf, W., Costello, E., Schanne, M. Heller, A., Scarpa, A., Neoptolemos, J.P., Werner, J., Büchler, M., Hoheisel, J.D., Hemminki, K., Giese, N. & Kumar, R. (2013). Somatic mutations in exocrine pancreatic tumors: association with patient survival. PLoS ONE 8, e60870. pdf icon
  152. Rizzato, C., Campa, D., Pezzilli, R., Soucek, P., Greenhalf, W., Capurso, G., Talar-Wojnarowska, R., Heller, A., Jamroziak, K., Khaw, K.-T., Key, T.J., Bambi, F., Landi, S., Vodickova, L., Büchler, M.W., Bugert, P., Vodicka, P., Neoptolemos, J.P., Werner, J., Hoheisel, J.D., Bauer, A.S., Giese, N. & Canzian, F. (2013). ABO blood groups and pancreatic cancer risk and survival: results from the PANcreatic Disease ReseArch (PANDoRA) consortium. Oncol. Reports 29, 1637-1644. pdf icon
  153. Shahmoradgoli, M., Riazalhosseini, Y., Haag, D., Becker, N., Hovestadt, V., Heck, S., Sinn, H.P., Schneeweiss, A., Mannherz, O., Sahin, Ö. & Lichter, P. (2013). Protein phosphatase 1, regulatory subunit 15B is a survival factor for ER alpha-positive breast cancer. Int. J. Cancer 132, 2714-2719. pdf icon
  154. Patenge, N., Pappesch, R., Krawack, F., Walda, C., Abu Mraheil, M., Jacob, A., Hain, T., & Kreikemeyer, B. (2013). Inhibition of growth and gene expression by PNA-peptide conjugates in Streptococcus pyogenes. Mol. Ther. Nucleic Acids 2, e132. pdf icon
  155. Campa, D., Rizzato, C., Bauer, A.S., Werner, J., Capurso, G., Costello, E., Talar-Wojnarowska, R., Jamroziak, K., Pezzilli, R., Gazouli, M., Khaw, K.-T., Key, T.J., Bambi, F., Heller, A., Landi, L., Vodickova, L., Theodoropoulos, G., Bugert, P., Vodicka, P., Hoheisel, J.D., Neoptolemos, J.P., Soucek, P., Büchler, M.W., Giese, N. & Canzian, F. (2013). Lack of replication of seven pancreatic cancer susceptibility loci identified in two Asian populations. Cancer Epidemiol. Biomarkers Prev. 22, 320-323. pdf icon
  156. Youns, M. & Fathy, G.M. (2013). Upregulation of extrinsic apoptotic pathway in curcumin-mediated antiproliferative effect on human pancreatic carcinogenesis. J. Cell. Biochem. 114, 2654-2665. pdf icon
  157. Löffler, F.F., Cheng, Y.-C., Muenster, B., Striffler, J., Liu, F.C., Bischoff, F.R., Doersam, E., Breitling, F. & Nesterov-Mueller, A. (2013). Printing peptide arrays with a complementary metal oxide semiconductor chip. Fundamentals and Applications of New Bioproduction Systems (Ed. Zeng, A.-P.), Advances in Biochemical Engineering/Biotechnology, Springer, 1-23.
  158. Hoheisel, J.D., Alhamdani, M.S.S. & Schröder, C. (2013). Affinity-based microarrays for proteomic analysis of cancer tissues. Proteomics Clin. Appl. 7, 8-16. pdf icon
  159. Haas, J., Frese, K.S., Park, Y.J., Keller, A., Vogel, B., Franke, J., Fischer, S., Weichenhan, D., Ehlermann, P., Bauer, A., Hassel, S., Nietsch, R., Dösch, A., Schultz, J.-H., Mereles, D., Hardt, S., Backs, J., Hoheisel, J.D., Plass, C., Katus, H.A., Meder, B. (2013). Alterations in cardiac DNA methylation suggest a role of epigenetic mechanisms in human dilated cardiomyopathy. EMBO Mol. Med. 5, 413-429. pdf icon
  160. Kim, E.-G., Seimiya, I., Chung, J., Hoheisel, J.D., Lim, I.K., Fujiki, H. & Park, S.C. (2013). The eleventh Korea-Japan-Germany joint symposium on cancer and ageing research. J. Cancer Res. Clin. Oncol. 139, 901-904. pdf icon
  161. Otero, E.P.U., Eliel, G.S.N., Fonseca, E. J. S., Hickman, J. M., Rodarte, R., Barretoc, E. & Jalkanen, K.J. (2013). Study of cancer cell lines with Fourier transform infrared (FTIR)/vibrational absorption (VA) spectroscopy. Curr. Phys. Chem. 3, 36-43. (doi: 10.2174/1877946811303010007)
  162. Durand, S., Rossa, M., Hernandez, O., Paizs, B. & Maitre, P. (2013). IR spectroscopy of b(4) fragment ions of protonated pentapeptides in the X-H (X = C, N, O) Region. J. Phys. Chem. 117, 2508-2516.
  163. Schirwitz, C., Löffler, F., Felgenhauer, T., Stadler, V., Nesterov-Mueller, A., Dahint, R., Breitling, F. & Bischoff, F.R. (2013). Purification of high-complexity peptide microarrays by spatially resolved array transfer to gold-coated membranes. Adv. Materials 25, 1598-1602. (doi: 10.1002/adma.201203853)

           2012
  164. Fredebohm, J., Böttcher, M., Eisen, C., Gaida, M.M., Heller, A., Keleg, S., Tost, J., Greulich-Bode, K., Hotz-Wagenblatt, A., Lathrop, M., Giese, N.A. & Hoheisel, J.D. (2012). Establishment and characterization of a highly tumourigenic and cancer stem cell enriched pancreatic cancer cell line as a well defined model system. PLoS ONE 7, e48503. pdf icon
  165. Botla, S.K., Moghaddas Gholami, A., Malekpour, M., Moskalev, E.A., Fallah, M., Aghajani, A., Bondar, I.S., Omranipour, R., Malekpour, F., Mohajeri, A, Jahangiri Babadi, A., Bubnov, V.V., Najmabadi, H., Hoheisel, J.D. & Riazalhosseini, Y. (2012). Diagnostic values of GHSR DNA methylation pattern in breast cancer. Breast Canc. Res. Treat. 135, 705-713. pdf icon
  166. Alhamdani, M.S.S., Youns, M., Buchholz, M., Gress, T.M., Beckers, M.C., Maréchal, D., Bauer, A.S., Schröder; C. & Hoheisel, J.D. (2012). Immunoassay-based proteome profiling of 24 pancreatic cancer cell lines. J. Proteomics 75, 3747-3759. pdf icon
  167. Moskalev, E.A., Luckert, K., Vorobjev, I.A., Mastitsky, S.E., Gladkikh, A.A., Stephan, A., Schrenk, M. Pötz, O., Joos, T.O. & Hoheisel, J.D. (2012). Concurrent epigenetic silencing of Wnt/β-catenin pathway inhibitor genes in B-cell chronic lymphocytic leukemia. BMC Cancer 12, 213. pdf icon
  168. Bauer, A., Keller, A., Costello-Goldring, E., Greenhalf, W., Bier, M., Borries, A., Beier, M., Neoptolemos, J.P., Büchler, M., Werner, J., Giese, N. & Hoheisel, J.D. (2012). Diagnosis of pancreatic cancer and chronic pancreatitis by measurement of microRNA abundance in blood and tissue. PLoS ONE 7, e34151. pdf icon
  169. Hoheisel, J.D. (2012). Antikörper zur Funktions-Analyse des Proteoms. Laborwelt 3, 16-17. pdf icon
  170. Hoheisel, J.D. (2012). Funktionelle Genom- und Proteomforschung in der Krebsforschung. Bioelektronische Diagnose- und Therapiesysteme; m3: microelectronics meets medicine (Wolf, B., eds.), Shaker Verlag, Aachen, 57-60.
  171. Hoheisel, J.D. (2012). DNA-Microarray Technologie. Bioanalytik (Lottspeich, E. & Engels, J.W., eds.), Elsevier, Heidelberg, 1047-1058.
  172. Shenfeld, M., Hachmo, Y., Frenkel, M., Dafni, N., Böttcher, M., Hoheisel, J.D., Dotan, I. & Canaani, D. (2012). ER-alpha-cDNA as part of a bicistronic transcript gives rise to high frequency, long term, receptor expressing cell clones. PLoS ONE 7, e31977. pdf icon
  173. Moskalev, E.A., Schubert, M. & Hoheisel, J.D. (2012). RNA-directed epigenomic reprogramming – an emerging principle of a more targeted cancer therapy? Genes Chrom. Cancer 51, 105-110. pdf icon
  174. Zang, H., Pelech, S., Ruijtenbeek, R., Felgenhauer, T., Bischoff, R., Breitling, F. & Stadler, V. (2012). Peptide Arrays. Microarrays in Diagnostics and Biomarker Development: Current and Future Applications (Ed. Jordan, B.), Springer, 81-112.
  175. Wagner, J., Löffler, F., Foertsch, T., Schirwitz, C., Fernandez, S., Hinkers, H., Arlinghaus, H.F., Painke, F., Koenig, K., Bischoff, F.R., Nesterov-Mueller, A., Breitling, F., Hausmann, M. & Lindenstruth, V. (2012). Image processing quality analysis for particle based peptide array production on a microchip. In Tech 2012. pdf icon
  176. Schirwitz, C., Löffler, F., Felgenhauer, T., Stadler, V., Breitling, F. & Bischoff, F.R. (2012). Sensing immune responses with customized peptide microarrays. Biointerphases 7, 47. pdf icon
  177. Löffler, F., Schirwitz, C., Wagner, J., König, K., Märkle, F., Torralba, G., Hausmann, M., Bischoff, F.R., Nesterov-Müller, A. & Breitling, F. (2012). Biomolecule arrays using functional combinatorial particle patterning on microchips. Advanced Funct. Mat. 22, 2503-2508.
  178. Bubnov, V., Moskalev, E., Petrovskiy, Y., Bauer, A., Hoheisel, J.D. & Zaporozhan, V. (2012). Hypermethylation of TUSC5 genes in breast cancer tissue. Exp. Oncol. 34, 370-372. pdf icon
  179. Wurst, M., Seliger, B., Jha, B.A., Klein, C., Queiroz, R. & Clayton, C. (2012). Expression of the RNA recognition motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei. Mol. Microbiol. 83, 1048-1063. pdf icon
  180. Ritari, J., Hultman, J., Fingerroos, R., Tarkkanen, J., Pullat, J., Paulin, L., Kivi, N., Auvinen, P. & Auvinen, E. (2012). Detection of human papillomaviruses by polymerase chain reaction and ligation reaction on universal microarray. PLoS ONE 7, e34211. pdf icon
  181. Simpkins, N.S., Holtrup, F., Rodeschini, V., Taylor, J.D. & Wolf, R. (2012). Comparison of the cytotoxic effects of enantiopure PPAPs, including nemorosone and clusianone. Bioorg Medicinal Chem. Lett. 22, 6144-6147.
  182. Somogyi, A., Harrison, A.G. & Paizs, B. (2012). Using gas-phase guest-host chemistry to probe the structures of b ions of peptides. J. Am. Soc. Mass Spectrom. 23, 2055-2058.
  183. Wassermann, T.N., Boyarkin, O.V., Paizs, B. & Rizzo, T.R. (2012). Conformation-specific spectroscopy of peptide fragment ions in a low-temperature ion trap. J. Am. Soc. Mass Spectrom.  23, 1029-1045. pdf icon
  184. Bythell, Benjamin J., Hernandez, O., Steinmetz, V., Paizs, B. & Maitre, P. (2012). Tyrosine side-chain catalyzed proton transfer in the YG a(2) ion revealed by theory and IR spectroscopy in the 'fingerprint' and X-H (X = C, N, O) stretching regions. Int. J. Mass Spectrom. 316, 227-234.
  185. Bernier, M.C., Paizs, B. & Wysocki, V.H. (2012). Influence of a gamma amino acid on the structures and reactivity of peptide a(3) ions. Int. J. Mass Spectr. 316, 259-267.
  186. Paizs, B. & Mann, M. (2012). 23rd Sanibel Conference on Mass Spectrometry: From fragmentation mechanisms to sequencing: tandem mass spectrometry based peptide and protein identification. J. Am. Soc. Mass Spectrom. 23, 575-576. pdf icon
  187. Paizs, B., Bythell, B.J. & Maitre, P. (2012). Rearrangement Pathways of the a(4) Ion of Protonated YGGFL Characterized by IR Spectroscopy and Modeling. J. Am. Soc. Mass Spectrom. 23, 664-675. pdf icon
  188. Moss, C.L., Chamot-Rooke, J., Nicol, E., Brown, J., Campuzano, I., Richardson, K., Williams, J.P., Bush, M.F., Bythell, B., Paizs, B. & Turecek, F. (2012). Assigning structures to gas-phase peptide cations and cation-radicals. An infrared multiphoton dissociation, ion mobility, electron transfer, and computational study of a histidine peptide ion. J. Phys. Chem. B 116, 3445-3456.
  189. Jalkanen, K.J., Olsen, K., Knapp-Mohammady, M. & Bohr, J. (2012). First principle structure for the close-packed and the 7/2 motifs of collagen. Europhysics Lett. 100, 28003, 1-4. pdf icon
  190. Otero, E.P.U., Eliel, G.S.N., Fonseca, E. J. S., Hickman, J. M., Rodarte, R., Barretoc, E. & Jalkanen, K.J. (2013). Study of cancer cell lines with Fourier transform infrared (FTIR)/vibrational absorption (VA) spectroscopy. Curr. Phys. Chem. 3, 36-43.
  191. Knapp-Mohammady, M. & March, N.H. (2012). Can liquid supercooling and glassy-like structure be invoked to interpret collective cell behaviour in the human body? Phys. Chem. Liq. 50, 137-151.
  192. March, N.H. & Knapp-Mohammady, M. (2012). The inhomogeneous electron liquid in the ligand estradiol compared and contrasted with that in estrone. Phys. Chem. Liq. 50, 271-277.

           2011
  193. Keller, A., Leidinger, P., Bauer, A., ElSharawi, A., Haas, J., Backes, C., Wendschlag, A., Giese, N., Tjaden, C., Ott, K., Werner, J., Hackert, T., Ruprecht, K., Huwer, H., Huebers, J., Jacobs, G., Rosenstiel, P., Dommisch, H., Schäfer, A., Müller-Quernheim, J., Wullich, B., Keck, B., Graf, N., Reichrath, J., Vogel, B., Nebel, A., Jager, S.U., Staehler, P., Amarantos, I., Boisguerin, V., Staehler, C., Beier, M., Scheffler, M., Büchler, M.W., Wischhusen, J., Häusler, S.F.M., Dietl, J., Hofmann, S., Lenhof, H.P., Schreiber, S., Katus, H.A., Rottbauer, W., Meder, B., Hoheisel, J.D., Franke, A. & Meese, E. (2011). Towards discovering the blood-born miRNome of human diseases. Nature Meth. 8, 841-843. pdf icon
  194. Friedrich, A., Hoheisel, J.D., Knemeyer, J.-P. & Marmé, N. (2011). A universally applicable process for preparing stoichiometrically 1:1 labelled functional proteins. Proteomics 11, 3757-3760. pdf icon
  195. Rizzato, C., Campa, D., Giese, N.,Werner, J., Rachakonda, S.P., Kumar, R., Schanné, M., Greenhalf, W., Costello, E., Khaw, K.T., Key, T.J., Siddiq, A., Lorenzo-Bermejo, J., Burwinkel, B., Neoptolemos, J.P., Büchler, M.W., Hoheisel, J.D., Bauer, A. & Canzian, F. (2011). Pancreatic cancer susceptibility loci and their role in survival. PLoS ONE 6, e27921. pdf icon
  196. Dorer, D.E., Holtrup, F., Fellenberg, K., Engelhardt, E., Hoheisel, J.D. & Nettelbeck, D.M. (2011). Replication and virus-induced transcriptome of HAdV-5 in normal host cells versus cancer cells – differences of relevance for adenoviral oncolysis. PLoS ONE 6, e27934. pdf icon
  197. Moskalev, E.A., Zavgorodnij, M.G., Majorova, S.P., Vorobjev, I.A., Jandaghi, P., Bure, I.V. & Hoheisel, J.D. (2011). Correction of PCR-bias in quantitative DNA methylation studies by means of cubic polynomial regression. Nucleic Acids Res. 39, e77. pdf icon
  198. Mustafa, S.A., Hoheisel, J.D. & Alhamdani, M.S.S. (2011). Secretome profiling with antibody microarrays. Mol. Biosyst. 7, 1795-1801. pdf icon
  199. Yepes, D., Jacob, A., Dauber, M., Costina, V., Hofheinz, R., Neumaier, M. & Findeisen, P. (2011). Substrate optimization and clinical validation of reporter peptides for MS-based protease profiling in serum specimens: a new approach for diagnosis of malignant diseases. Int. J. Oncol. 39, 145-154. pdf icon
  200. de Souza Rocha Simonini, P., Riazalhosseini, Y. & Hoheisel, J.D. (2011). Eine kleine Ribonukleinsäure mit großer Wirkung bei hormonsensitiven Brusttumoren. Geburtsh. & Frauenheilk. 71, 878-879. pdf icon
  201. Nibret, E., Youns, M., Krauth-Siegel, R.L. & Wink, M. (2011). Biological activities of Xanthatin from Xanthium strumarium leaves. Phytother. Res. 25, 1883-1890. pdf icon
  202. Bondar, A.N., Knapp-Mohammady, M., Suhai, S., Fischer, S. & Smith, J.C. (2011). The ground-state properties of the retinal revisited: quantum mechanical and classical mechanical computations of retinal proteins. Theor. Chem. Acc. 130, 1169-1183. pdf icon
  203. March, N.H. & Knapp-Mohammady, M. (2011). The inhomogeneous electron liquid in the ligand estradiol compared and contrasted with that in estrone. Phys. Chem. Liq. 49, 259-269.
  204. Piva, J.A.A.C., Silva, J.L.R., Raniero, L., Jalkanen, K.J., Martin, A.A. & Bohr, H.G. (2011). Overview of the use of theoriy to understand infrared and Raman spectra and images of biomolecules: colorectal cancer as an example. Theor. Chem. Acc. 130, 1261-1273. pdf icon
  205. Schmidt, R., Jacak, J., Schirwitz, C., Stadler, V., Michel, G., Marmé, N., Schütz, G.J., Hoheisel, J.D. & Knemeyer, J.-P. (2011). Single-molecule detection on a protein-array assay platform for the exposure of a tuberculosis antigen. J. Proteome Res.10, 1316-1322. pdf icon
  206. Holtrup, F., Bauer, A., Fellenberg, K., Hilger, R.A., Wink, M. & Hoheisel, J.D. (2011). Nemorosone specifically inhibits growth of pancreatic cancer cells and induces apoptosis via activation of the unfolded protein response (UPR). Brit. J. Pharmacol. 162, 1045-1059. pdf icon
  207. Alhamdani, M.S. & Hoheisel, J.D. (2011). Antibody microarrays in proteome profiling. Molecular Analysis and Genome Discovery (Rapley, R & Harbron, S., eds.), Wiley, 219-243.
  208. Youns, M., Hoheisel, J.D. & Efferth, T. (2011). Therapeutic and diagnostic applications of nanoparticles. Curr. Drug Targets 12, 357-365.
  209. March, N.H. & Knapp-Mohammady, M. (2011). Molecular versus tissue liquids: an atomic length? Phys. Chem. Liq. 49, 830-834.
  210. March, N.H. & Knapp-Mohammady, M. (2011). Aqueous microdroplet encapsulation of normal or cancerous single cells. Phys. Chem. Liq. 49, 409-413.
  211. Torres Salazar, A., Hoheisel, J.D., Youns, M. & Wink, M. (2011). Anti-inflammatory and anti-cancer activities of essential oils and their biological constituents. Int. J. Clin. Pharmacol. Ther. 49, 93-95.
  212. Sinha, R.K., Erlekam, U., Bythell, B.J., Paizs, B. & Maitre, P. (2011). Diagnosing the protonation site of b (2) peptide fragment ions using IRMPD in the X-H (X = O, N, and C) stretching region. J. Am. Soc. Mass Spectrom. 22, 1645-1650. pdf icon
  213. Bleiholder, C., Suhai, S., Harrison, A.,G. & Paizs, B. (2011). Towards understanding the tandem mass spectra of protonated oligopeptides. 2: the proline effect in collision-induced dissociation of protonated Ala-Ala-Xxx-Pro-Ala (Xxx = Ala, Ser, Leu, Val, Phe, and Trp). J. Am. Soc. Mass Spectrom. 22, 1032-1039. pdf icon
  214. March, N.H. & Knapp-Mohammady, M. (2011). The inhomogeneous electron liquid in some bioinorganic assemblies studied by density functional methods. Phys. Chem. Liq. 49, 259-269.
  215. Youns, M., Bauer, A., Reichling, J., Fellenberg, K., Efferth, T. & Hoheisel, J.D. (2011). Gene expression profiling identifies novel key players involved in chemopreventive effect of NS-398 on pancreatic cancer cells. Eur. J. Pharmacol. 650, 170-177.
  216. Schröder, C., Alhamdani, M.S.S., Fellenberg, K., Bauer, A., Jacob, A. & Hoheisel, J.D. (2011). Robust protein profiling with complex antibody microarrays in a dual-colour mode. Proteinarray Technology (Korf, U., ed.), Humana/Springer, 203-221.

           2010
  217. de Souza Rocha Simonini, P., Breiling, A., Gupta, N., Malekpour, M., Youns, M., Omranipour, R., Malekpour, F., Volinia, S., Croce, C.M., Najmabadi, H., Diederichs, S., Sahin, Ö., Mayer, D., Lyko, F., Hoheisel, J.D. & Riazalhosseini, Y. (2010). Epigenetically de-regulated microRNA-375 activates Estrogen Receptor alpha activity in breast cancer. Cancer Res. 70, 9175-9184. pdf icon
  218. Alhamdani, M.S., Schröder, C. & Hoheisel, J.D. (2010). Analysis conditions for proteomic profiling of mammalian tissue and cell extracts with antibody microarrays. Proteomics 10, 3203-3207. pdf icon
  219. Schröder, C., Jacob, A., Tonack, S., Radon, T., Sill, M., Zucknick, M., Rüffer, S., Costello, E., Neoptolemos, J., Crnogorac-Jurcevic, T., Bauer, A., Fellenberg, K. & Hoheisel, J.D. (2010). Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-specific antibodies. Mol. Cell. Prot. 9, 1271-1280. pdf icon
  220. Alhamdani, M.S.S., Schröder, C., Giese, N., Bauer, A. & Hoheisel, J.D. (2010). Single-step procedure for the isolation of proteins at near-native conditions from mammalian tissue for proteomic analysis on antibody microarrays. J. Prot. Res. 9, 963-971. pdf icon
  221. Schröder, C., Jacob, A., Rüffer, S., Fellenberg, K. & Hoheisel, J.D. (2010). Antibody microarrays for expression analysis. Antibody Engineering, Vol. 2 (Dübel, S., ed.), Springer Verlag, 429-445. pdf icon
  222. Sill, M., Schröder, C., Hoheisel, J.D., Benner, A. & Zucknick, M. (2010). Assessment and optimisation of normalisation methods for dual-colour antibody microarrays. BMC Bioinformatics 11, 556. pdf icon
  223. Gloriam, D.E., Orchard, S., Bertinetti, D., Bjorling, E., Bongcam-Rudloff, E., Bourbeillon, J., Bradbury, A.R., de Daruvar, A., Dübel, S., Frank, R., Gibson, T.J., Haslam, N., Herberg, F.W., Hiltke, T., Hoheisel, J.D., Kerrien, S., Koegl, M., Konthur, Z., Korn, B., Landegren, U., van der Maarel, S., Montecchi-Palazzi, L., Palcy, S., Rodriguez, H., Schweinsberg, S., Sievert, V., Stoevesandt, O., Taussig, M.J., Uhlen, M., Wingren, C., Gold, L., Woollard, P., Sherman, D.J. & Hermjakob, H. (2010). A community standard for the representation of protein affinity reagents. Mol. Cell. Prot. 9, 1-10. pdf icon
  224. Helwa, R. & Hoheisel, J.D. (2010). Analysis of DNA-protein interactions; from nitrocellulose filter-binding assays to microarray studies. Anal. Bioanal. Chem. 398, 2551-2561. pdf icon
  225. Böttcher, M., Kischkel, F. & Hoheisel, J.D. (2010). High-definition DNA methylation profiles from breast and ovarian carcinoma cell lines with differing doxorubicin resistance. PloS ONE 5, e11002. pdf icon
  226. Bythell, B.J., Knapp-Mohammady, M., Paizs, B. & Harrison, A.G. (2010). Effect of the His residue on the cyclization of b ions. J. Am. Soc. Mass Spectrom. 21, 1352-1363. pdf icon
  227. Uhlmann, S., Zhang, J.D., Schwager, A., Mannsperger, H., Riazalhosseini, Y., Burmester, S., Ward, A., Korf, U., Wiemann, S. & Sahin, O. (2010). miR-200bc/429 cluster targets PLCc1 and differentially regulates proliferation and EGF-driven invasion than miR-200a/141 in breast cancer. Oncogene 29, 4297-4306.
  228. Khan, M.S., Haas, F.H., Samami, A.A., Gholami, A.M., Bauer, A., Fellenberg, K., Reichelt, M., Hänsch, R., Mendel, R.R., Meyer, A.J., Wirtz, M. & Hell R. (2010). Sulfite reductase defines a newly discovered bottleneck for assimilatory sulfate reduction and is essential for growth and development in Arabidopsis thaliana. Plant Cell 22, 1216-1231. pdf icon
  229. Mraheil, M.A., Billion,, A., Kuenne, C., Pischimarov, J., Kreikemeyer, B., Engelmann, S., Hartke, A., Giard, J.-C., Rupnik, M., Vorwerk, S., Beier, M., Retey, J., Hartsch, T., Jacob, A., Cemic, F., Hemberger, J., Chakraborty1, T. & Hain, T. (2010). Comparative genome-wide analysis of small RNAs of major Gram-positive pathogens: from identification to application. Microb. Biotechnol. 3, 634-657. pdf icon
  230. Müller, P., Schmitt, E., Jacob, A., Hoheisel, J.D., Kaufmann, R., Cremer, C. & Hausmann, M. (2010). COMBO-FISH enables high precision localization microscopy as a prerequisite for nanostructure analysis of genome loci. Int. J. Mol. Sci. 11, 4094-4105. pdf icon
  231. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Toxicogenomics for the prediction of toxicity related to herbs from traditional chinese medicine. Planta Med. 76, 2019-2025. pdf icon
  232. Pinto, L., Efferth, T., Torres, A., Hoheisel, J.D. & Youns, M. (2010). Berberine selectively inhibits cell growth and mediates caspase-independent cell death in human pancreatic cancer cells. Planta Med. 76, 1155-1161.
  233. Mulyaningsih, S., Youns, M., El-Readi, M.Z., Ashour, M.L., Nibret, E., Sporer, F., Herrmann, F., Reichling, J. & Wink, M. (2010). Biological activity of the essential oil of Kadsura longipedunculata (Schisandraceae) and its major components. J. Pharm. Pharmacol. 62, 1037-1044.
  234. Hoheisel, J.D. (2010). Zellulären Übeltätern auf der Spur; Funktionelle Genom- und Proteomanalyse in der Krebsforschung. Labor & More 3.10, 29-32. pdf icon
  235. Keller, A., Lenhof, H.-P., Amarantos, I., Bauer, A., Giese, N., Hoheisel, J.D., Leidinger, P. & Meese, E. (2010). MicroRNA-Profile als vielversprechende Diagnosemethode. Laborwelt 1/10, 33.
  236. Moghaddas Gholami, A.M. & Fellenberg, K. (2010). Cross-species common regulatory network inference without requirement for prior gene affiliation. Bioinformatics 26, 1082-1090. pdf icon
  237. Böttcher, M. & Hoheisel, J.D. (2010). Pooled RNAi screens - technical and biological aspects. Curr. Genomics 11, 162-167.
  238. Böttcher, M., Fredebohm, J., Moghaddas Gholami, A., Hachmo, Y., Dotan, I., Canaani, D. & Hoheisel, J.D. (2010). Decoding pooled RNAi screens by means of barcode tiling arrays. BMC Genomics 11, 7. pdf icon
  239. Bythell, B.J., Csonka, I.P., Suhai, S., Barofsky, D.F. & Paizs, B.: Gas-phase structure and fragmentation pathways of singly protonated peptides with N-terminal arginine. J. Phys. Chem. 114, 15092-15105, 2010.
  240. Bythell, B.J., Maitre, P., Paizs, B.: Cyclization and Rearrangement Reactions of a(n) Fragment Ions of Protonated Peptides. J. Am. Chem. Soc. 132, 14766-14779, 2010.
  241. Turecek, F., Chung, T.W., Moss, C.L., Wyer, J.A., Ehlerding, A., Holm, A.I.S., Zettergren, H., Nielsen, S.B., Hvelplund, P., Chamot-Rooke, J., Bythell, B., Paizs, B.: The Histidine Effect. Electron Transfer and Capture Cause Different Dissociations and Rearrangements of Histidine Peptide Cation-Radicals. J. Am. Chem. Soc. 132, 10728-10740, 2010.
  242. Bythell, B.J., Dain, R.P., Curtice, S.S., Oomens, J., Steill, J.D., Groenewold, G.S., Paizs, B., Van Stipdonk, M.J.: Structure of [M + H - H2O](+) from Protonated Tetraglycine Revealed by Tandem Mass Spectrometry and IRMPD Spectroscopy. J. Phys. Chem. 114, 5076-5082, 2010.
  243. Bleiholder,C., Paizs, B.: Competing gas-phase fragmentation pathways of asparagine-, glutamine-, and lysine-containing protonated dipeptides. Theor. Chem. Accounts 125, 387-396, 2010.
  244. Knapp-Mohammady, M. & March, N.H. (2010). Quantum-chemical study of the potential anti-cancer drug Ru-NAMI-A in complex with estrogen and the simulated VA and VCD spectra of estrogen, the Ru-NAMI-A drug, and possible/proposed estrogen-Ru-NAMI-A complexes. Theor. Chem. Acc. 125, 293-303. pdf icon
  245. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Applications of microarray technology in ethnomedicinal plant research. Curr. Adv. Ethnomed. Plants (Rios, J.L., ed.), 424-443.
  246. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Traditional Chinese medicine (TCM) for molecular targeted therapies of tumors. Curr. Drug Discov. Technol. 7, 37-45.
  247. Kramer, S., Queiroz, R., Ellis, L., Hoheisel, J.D., Clayton, C. & Carrington, M. (2010). The RNA helicase DHH1 is central to the correct expression of many developmentally regulated mRNAs in trypanosomes. J. Cell Sci. 123, 699-711. pdf icon
  248. Simo, G., Herder, S., Cuny, G. & Hoheisel, J.D. (2010). Identification of subspecies specific genes differentially expressed in procyclic forms of Trypanosoma brucei subspecies. Infect. Genet. Evol. 10, 229-237. pdf icon
  249. Soza-Ried, J., Hotz-Wagenblatt, A., Glatting, K.H., del Val, C., Fellenberg, K., Bode, H.R., Frank, U., Hoheisel, J.D. & Frohme, M. (2010). The transcriptome of the colonial marine hydroid Hydractinia echinata. FEBS J. 277, 197-209. pdf icon

           2009
  250. Archer, S., Luu, V.-D., Queiroz, R., Brems, S. & Clayton, C. (2009). Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle. PLoS Pathogen 5, e1000565. pdf icon
  251. Hoheisel, J.D. (2009). Zurück in die Zukunft der Sequenzierung (Editorial). BIOforum 6, 3. pdf icon
  252. Youns, M., Efferth, T. & Hoheisel, J.D. (2009). Microarray analysis of gene expression in medicinal plant research. Drug Discov. Ther. 3, 200-207. pdf icon
  253. Queiroz, R., Benz, C., Fellenberg, K., Schindler, V., Hoheisel, J.D. & Clayton, C. (2009). Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons. BMC Genomics 10, 495. pdf icon
  254. Pfannschmidt, J., Bade, S., Hoheisel, J.D., Muley, T., Dienemann, H., Herpel, E. (2009). Identification of immunohistochemical prognostic markers for survival after resection of pulmonary metastases from colorectal carcinoma. Thorac. Cardiov. Surgeon 57, 403–408. pdf icon
  255. Alhamdani, M.S.S., Schröder, C. & Hoheisel, J.D. (2009). Oncoproteomic profiling with antibody microarrays. Genome Medicine 1, 68. pdf icon
  256. Ashour, M., El-readi, M., Youns, M., Mulyaningsih, S., Sporer, F., Efferth, T. & Wink, M. (2009). Chemical composition and biological activities of the essential oil obtained from Bupleurum marginatum (Apiaceae). J. Pharm. Pharmacol. 61, 1079-1087.
  257. Youns, M., Efferth, T., Reichling, J., Fellenberg, K., Bauer, A. & Hoheisel, J.D. (2009). Gene expression profiling identifies novel key players involved in the cytotoxic effect of Artesunate on pancreatic cancer cells. Biochem. Pharmacol. 78, 273-283. pdf icon
  258. Börner, A., Warnken, U., Schnölzer, M., von Hagen, J., Giese, N., Bauer, A. & Hoheisel, J.D. (2009). Subcellular protein extraction from human pancreatic cancer tissues. BioTechniques 46, 297-304. pdf icon
  259. Ketterer, K., Kong, B., Frank, D., Giese, N., Bauer, A., Hoheisel, J.D., Korc, M., Kleeff, J., Michalski, C. & Friess, H. (2009). Neuromedin U is overexpressed in pancreatic cancer and increases invasiveness via the hepatocyte growth factor c-Met pathway. Cancer Lett. 277, 72-81. pdf icon
  260. Bau, S., Schracke, N., Kränzle, M., Wu, H., Hoheisel, J.D., Beier, M. & Summerer, D. (2009). Targeted next-generation-sequencing by specific capture of multiple genomic loci using low-volume microfluidic DNA-arrays. Anal. Bioanal. Chem. 393, 171-175. pdf icon
  261. Wurst, M., Robles, A., Po, J., Luu, V.-D., Brems, S., Marentije, M., Stoitsova, S., Quijada, L., Hoheisel, J.D., Stewart, M., Hartmann, C. & Clayton, C. (2009). An RNAi screen of the RRM-domain proteins of Trypanosoma brucei. Mol. Biochem. Parasit. 163, 61-65. pdf icon
  262. Dannewitz, B., Tomakidi, P., Syagailo, Y., Kohl, A., Staehle, H.J., Eickholz, P., Komposch, G. & Steinberg, T. (2009). Elevation of collagen type I in fibroblast–keratinocyte cocultures emphasizes the decisive role of fibroblasts in the manifestation of the phenotype of cyclosporin A-induced gingival overgrowth. J. Period. Res. 44, 62-72. pdf icon
  263. Bauer, A., Kleeff, J., Bier, M., Wirtz, M., Kayed, H., Esposito, I., Korc, M., Hafner, M., Hoheisel, J.D. & Friess, H. (2009). Identification of malignancy factors by analysing cystic tumours of the pancreas. Pancreatology 9, 34-44. pdf icon

           2008
  264. Riazalhosseini, Y. & Hoheisel, J.D. (2008). Do we use the appropriate controls for the identification of informative methylation markers for early cancer detection? Genome Biol. 9, 405. pdf icon
  265. Clayton, C., Schwede, A., Stewart, M., Robles, A., Benz, C., Po, J., Wurst, M., Queiroz, R. & Archer, S. (2008). Control of mRNA degradation in trypanosomes. Biochem Soc. Trans. 36, 520-521. pdf icon
  266. Beatriz Bermúdez, B., López, S., Pacheco, Y.M., Villar, J., Muriana, F.J.G., Hoheisel, J.H., Bauer, A. & Abia, R. (2008). The influence of postprandial triclyceride-rich lipoproteins on lipid-mediated gene expression in smooth muscle cells of the human coronary artery. Cardiovasc. Res. 79, 294-303. pdf icon
  267. Vorwerk, S., Ganter, K., Cheng, Y., Hoheisel, J.D., Stähler, P.F. & Beier, M. (2008). Microfluidic-based enzymatic on-chip labeling of miRNAs. New Biotechnol. 25, 142-149. pdf icon
  268. Selak, N., Bachrati, C.Z., Shevelev, I., Dietschy, T., Jacob, A., Hübscher, U., Hoheisel, J.D., Hickson, I.D. & Stagljar, I. (2008). The Bloom’s syndrome helicase (BLM) interacts physically and functionally with p12, the smallest subunit of human DNA polymerase delta. Nucleic Acids Res. 36, 5166-5179. pdf icon
  269. Pullat, J., Kusnezow, W., Jakson, K., Beier, M., Hoheisel, J.D. & Metspalu, A. (2008). Mutational analysis and SNP typing by an Arrayed Primer Extension (APEX) reaction on an in situ-synthesised 5'-3' oligonucleotide microarray. New Biotechnol. 25, 131-141. pdf icon
  270. Haas, F.H., Heeg, C., Queiroz, R., Bauer, A., Wirtz, M. & Hell, R. (2008). Mitochondrial serine acetyltransferase functions as a pacemaker of cysteine synthesis in plant cells. Plant Physiol. 148, 1055-1067. pdf icon
  271. Kramer, S., Queiroz, R., Ellis, L., Webb, H., Hoheisel, J.D., Clayton, C. & Carrington, M. (2008). Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2alpha phosphorylation at Thr169. J. Cell Sci. 121, 3002-3014. pdf icon
  272. Schanné, M. , Bodem, J., Gerhold-Ay, A., Jacob, A., Fellenberg, K., Kräusslich, H.-G. & Hoheisel, J.D. (2008). Genotypic resistance testing in HIV by Arrayed Primer Extension. Anal. Bioanal. Chem. 391, 1661-1669. pdf icon
  273. Litovkin, K.V., Ivanova, O.V., Bauer, A., Hoheisel, J.D., Bubnov, V.V. & Zaporozhan, V.N. (2008). Microarray study of gene expression in uterine leiomyoma. Exp. Oncol. 30, 106-111. pdf icon
  274. Hoheisel, J.D. (2008). Microarray-Technologie; funktionelle Analysen der genetischen Information. Praxis Naturwiss. Biol. 2/57, 6-8.
  275. Beier, V. & Hoheisel, J.D. (2008). MicroRNAs; small molecules with big impact in cancer. Bioforum Eur. 12/08, 2-3. pdf icon
  276. Friedrich, A., Müller, M., Nolte, O., Wolfrum, J., Sauer, M., Hoheisel, J.D., Knemeyer, J.P. & Marmé, N. (2008). Highly specific identification of single nucleic polymorphism in M. tuberculosis using smart probes and single-molecule fluorescence spectroscopy in combination with blocking oligonucleotides. Proc. SPIE. 6867, 68670N (8 pages).
  277. Marmé, N., Lee, H., Friedrich, A., Park, C.W., Fiore, J., Nesbitt, D.J. & Knemeyer, J.P. (2008). Suppressing nonspecific adsorption of proteins on the single-molecular level. Proc. SPIE 6862, 686212 (7 pages).

           2007
  278. Marmé, N., Sauer, M., Wolfrum, J., Hoheisel, J.D. & Knemeyer, J.-P. (2007). Smart Probes – a novel class of self-quenching DNA probes. Res. Adv. Nucleic Acids Res. 1, 1-10.
  279. Schanné, M., Beier, M. & Hoheisel, J.D. (2007). Unravelling the epigenetic code. Science Inside 2, 52-53. pdf icon
  280. Schanné, M., Riazalhosseini, Y., Beier, V., Gröne, H.-J., Waha, A., Schuster, M., Stähler, P., Lyko, F. & Hoheisel, J.D. (2007). Ein Programm für jeden Zelltyp. GenomXPress 2/07, 35-37.
  281. Hartmann, C., Benz, C., Brems, S., Ellis, L., Luu, V.-D., Stewart, M., D'Orso, I., Busold, C., Fellenberg, K., Frasch, A.C.C., Carrington, M., Hoheisel, J.D. & Clayton, C.E. (2007). The small trypanosome RNA-binding proteins TbUBP1 und TbUBP2 influence expression of F-box protein mRNAs in bloodstream trypanosomes. Eucaryotic Cell 6, 1964-1978. pdf icon
  282. Staudt, T.M., Kräusslich, H.G., Marmé, N. & Knemeyer, J.P. (2007). Self-quenching peptide substrates for ultra-sensitive HIV-protease assays. Int. J. Environ. Anal. Chem. 87, 731-743.
  283. Bauer, A., Solinas-Toldo, S. & Hoheisel, J.D. (2007). Gendiagnostik; methodische Grundlagen. Grundlagen der Molekularen Medizin; 3. Auflage (Ganten, D. & Ruckpaul, K., eds.), Springer Verlag, 346-362.
  284. Moskalyov, E.A., Eprintsev, A.T. & Hoheisel, J.D. (2007). DNA methylation profiling in cancer: from single nucleotides towards the methylome. Molekulyarnaya Biologiya 41, 793-807. (in Russian)  Mol. Biol. 41, 723-736. (in English)  pdf icon
  285. Marmé, N. & Knemeyer, J.P. (2007). Sensitive bioanalytics: combining single-molecule spectroscopy with mono-labelled, self-quenching probes. Anal. Bioanal. Chem. 388, 1075-1085. pdf icon
  286. Pullat, J., Fleischer, R., Becker, N., Beier, M., Metspalu, A. & Hoheisel, J.D. (2007). Optimisation of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays: analysing variations in immune regulator genes of hay-fever samples. BMC Genomics 8, 282. pdf icon
  287. Kusumawidjaja, G., Kayed, H., Giese, N., Bauer, A., Erkan, M., Giese, T., Hoheisel, J.D., Friess, H. & Kleeff, J. (2007). Basic transcription factor 3 (BTF3) regulates transcription of tumor-associated genes in pancreatic cancer cells. Cancer Biol. Ther. 6, 367-376. pdf icon
  288. Loos, M., Bergmann, F., Bauer, A., Hoheisel, J.D., Esposito, I., Kleeff, J., Schirmacher, P., Büchler, M.W., Klöppel, G. & Friess, H. (2007). Solid type clear cell carcinoma of the pancreas: differential diagnosis of an unusual case and review of the literature. Virchows Arch. 450, 719-726. pdf icon
  289. Kusnezow, W., Banzon, V., Schröder, C., Schaal, R., Hoheisel, J.D., Rüffer, S., Luft, P., Duschl, A. & Syagailo, Y.V. (2007). Comparison of various labeling substances for antibody microarray based profiling of clinical specimens. Proteomics 7, 1786-1799. pdf icon
  290. Knemeyer, J.P. & Marmé, N. (2007). Recent patents on self-quenching DNA probes. Recent Pat. DNA Gene Seq. 1, 145-157. pdf icon
  291. Denninger, V., Figarella, K. Schönfeld, C., Brems, S., Busold, C., Lang, F., Hoheisel, J.D. & Duszenko, M. (2007). Troglitazone induces differentiation in Trypanaosoma brucei. Exp. Cell Res. 313, 1805-1819. pdf icon
  292. Marmé, N., Friedrich, A., Hoheisel, J.D. & Knemeyer, J.-P. (2007). Smart Probes for the highly sensitive identification of single nucleic polymorphism on the single molecular level. FEBS Lett. 581, 1644-1648. pdf icon
  293. Jesnowski, R., Zubakov, D., Faissner, R., Ringel, J., Hoheisel, J.D., Lösel, R., Schnölzer; M. & Löhr, M. (2007). Genes and proteins differentially expressed during in vitro malignant transformation of bovine pancreatic duct cells. Neoplesia 9, 136-146. pdf icon
  294. Beier, V., Mund, C. & Hoheisel, J.D. (2007). Monitoring methylation changes in cancer. Adv. Biochem. Eng. Biotechnol. 104, Volume: Analytics of Protein-DNA Interactions (Seitz, H., Hrsg.), Springer Verlag, 1-11.
  295. Giordano, F.A., Hotz-Wagenblatt, A., Lauterborn, D., Appelt, J.U., Fellenberg, K., Nagy, K.Z., Zeller, W.J., Suhai, S., Fruehauf, S.& Laufs, S. (2007). New bioinformatic strategies to rapidly characterize retroviral integration sites of gene therapy vectors. Meth. Inform. Med. 46, 542-547.
  296. Friedrich, A., Habl, G., Sauer, M., Wolfrum, J., Hoheisel, J.D., Marmé, N. & Knemeyer, J.P. (2007). New hairpin-structured DNA probes: alternatives to classical molecular beacons. Proc. SPIE 6444, 64440M.
  297. Schliwka, J., Pullat, J., DeVilliers, E.-M., Hoheisel, J.D. & Beier, M. (2007). Mit der Geniom-Microarray Technologie HPV-Genotypen auf der Spur. Biospectrum 01.07, 52-53.
  298. Taussig, M.J., Stoevesandt, O., Borrebaeck, C., Bradbury, A., Cahill, D., Cambillau, C., de Daruvar, A., Dübel, S., Eichler, J., Frank, R., Gibson, T., Gloriam, D., Gold, L., Herberg, F., Hermjakob, H., Hoheisel, J.D., Joos, T., Kallioniemi, O., Koegl, M., Konthur, Z., Korn, B., Kremmer, E., Krobitsch, S., Landegren, U., van der Marel, S., McCafferty, J., Muyldermans, S., Nygren, P.A., Palcy, S., Plückthun, A., Polic, B., Przybylski, M., Saviranta, P., Sawyer, A., Sherman, D.J., Skerra, A., Templin, M., Ueffing, M. & Uhlén, M. (2007). ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome. Nature Meth. 4, 13-17. pdf icon
  299. Hauser, M., Horn, P., Tournu, H., Hauser, N.C., Hoheisel, J.D., Brown, A.J.P. & Dickinson, J.R. (2007). A transcriptome analysis of isoamyl alcohol-induced filamentation in yeast reveals a novel role for Gre2p as isovaleraldehyde reductase. FEMS Yeast Res. 7, 84-92. pdf icon
  300. Marmé, N., Knemeyer, J.P. & Hoheisel, J.D. (2007). Imaging of single molecules in living cells. Anal. Bioanal. Chem. 387, 37-40. pdf icon

           2006
  301. Fellenberg, K., Busold, C., Witt, O., Bauer, A., Beckmann, B., Hauser, N.C., Frohme, M., Winter, S., Dippon, J. & Hoheisel, J.D. (2006). Systematic interpretation of microarray data using experiment annotations. BMC Genomics 7, 319. pdf icon
  302. Hauser, N.C., Martinez, R., Jacob, A., Rupp, S., Hoheisel, J.D. & Matysiak, S. (2006). Utilising the left-helical conformation of L-DNA for analysing different marker types on a single universal microarray platform. Nucleic Acids Res. 34, 5101-5111. pdf icon
  303. Luu, V.-D., Brems, S., Hoheisel, J.D., Burchmore, R., Guilbride, D.L. & Clayton, C.E. (2006). Functional analysis of Trypanosoma brucei PUF1. Mol. Biochem. Parasit. 150, 340-349.
  304. Gruegelsiepe, H., Brandt, O. & Hartmann, R.K. (2006). Antisense Inhibition of RNase P; mechanistic aspects and application to live bacteria. J. Biol. Chem. 281, 30613–30620. pdf icon
  305. Marmé, N., Friedrich, A., Müller, M., Nolte, O., Wolfrum, J., Hoheisel, J.D., Sauer, M. & Knemeyer, J.P. (2006). Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy. Nucleic Acids Res. 34, e90. pdf icon
  306. Kusnezow, W., Syagailo, Y.V., Rüffer, S., Baudenstiel, N., Gauer, C., Hoheisel, J.D., Wild, D.G. & Goychuk, I.(2006). Optimal design of microarray immunoassays to compensate for kinetic limitations – theory and experiment. Mol. Cell. Prot. 5, 1681-1696. pdf icon
  307. Angenendt, P., Kreutzberger, J., Glökler, J. & Hoheisel, J.D. (2006). Generation of high-density protein-microarrays by cell-free in situ expression of unpurified PCR products. Mol. Cell. Prot. 5, 1658-1666. pdf icon
  308. Schütz, S., Chemnitz, J., Spillner, C., Frohme, M., Hauber, J. & Kehlenbach; R.H. (2006). Stimulated expression of mRNAs in activated T cells depends on a functional CRM1 nuclear export pathway. J. Mol. Biol. 358, 997-1009. pdf icon
  309. Marmé, N., Friedrich, A., Denapaite, D., Hakenbeck, R. & Knemeyer, J.-P. (2006). Single nucleotide polymorphism analysis using different colored dye dimer probes. Chem. Phys. Lett. 428, 440–445. pdf icon
  310. Hoheisel, J.D. (2006). Microarrays; an overview. Encyclop. Genet. Genomics Proteomics Bioinf. (Dunn, M., Jorde, L., Little, P. & Subramaniam, S., eds.), Wiley-VHC, ISBN-10:0-470-84974-6.
  311. Altenhein, B., Becker, A., Busold, C., Beckmann, B., Hoheisel, J.D. & Technau, G.M. (2006). Expression profiling of glial genes during Drosophila embryogenesis. Develop. Biol. 296, 545-560. pdf icon
  312. Jacob, A., Brandt, O. & Hoheisel, J.D. (2006). PNA Chips. Encyclop. Ref. Genomics Proteomics Mol. Med. (Ganten, D. & Ruckpaul, K., eds.), 1422-1425. pdf icon
  313. Nolte, O., Müller, M., Häfner, B., Knemeyer, J.P., Stöhr, K., Wolfrum, J., Hakenbeck, R., Denapaite, D., Schwarz-Finsterle, J., Stein, S., Herten, D.P., Hausmann, M. & Sauer, M. (2006) Novel singly labeled probes for identification of micro-organisms, detection of antibiotic resistance genes and mutations, and tumor diagnosis (Smart Probes). Biophotonics: visions for a better health care (Popp, J., ed.), WILEY-VCH, Weinheim.
  314. Brandt, O., Feldner, J., Hellweg, S., Schröder, M., Stephan, A., Arlinghaus, H.F., Hoheisel, J.D. & Jacob, A. (2006). Development towards label and amplification-free genotyping of genomic DNA. Appl. Surface Sci. 252, 6935-6940.
  315. Hellweg, S., Jacob, A., Hoheisel, J.D., Grehl, T. & Arlinghaus, H.F. (2006). Mass spectrometric characterization of DNA microarrays as a function of primary ion species. Appl. Surface Sci. 252, 6742-6745. pdf icon
  316. Hoheisel, J.D. (2006). DNA-Microarray Technologie. Bioanalytik (Lottspeich, E. & Engels, J.W., eds.), Elsevier, Heidelberg, 967-978.
  317. Hoheisel, J.D. (2006). Microarray technology; beyond transcript profiling and genotype analysis. Nature Rev. Genet. 7, 200-210. pdf icon
  318. Reva, O.N., Weinel, C., Weinel, M., Böhm, K., Stjepandic, D., Hoheisel, J.D. & Tümmler, B. (2006). Functional genomics of stress response in Pseudomonas putida KT2440. J. Bacteriol. 188, 4079-4092. pdf icon
  319. Sobek, J., Bartscherer, K., Jacob, A., Hoheisel, J.D. & Angenendt, P. (2006). Microarray technology as a universal tool for high-throughput analysis of biological systems. Comb. Chem. High-Throughput Screening 9, 365-380. pdf icon
  320. Stähler, P., Beier, M., Gao, X. & Hoheisel, J.D. (2006). Another side of genomics: synthethic biology as a means for the exploitation of whole-genome sequence information. J. Biotechnol. 124, 206-212. pdf icon
  321. Kusnezow, W., Syagailo, Y.V., Goychuk, I., Hoheisel, J.D. & Wild, D.G. (2006). Antibody microarrays: the crucial impact of mass transport on assay kinetics and sensitivity. Expert Rev. Mol. Diagn. 6, 111-124. pdf icon
  322. Kusnezow, W., Syagailo, Y.V., Rüffer, S., Klenin, K., Sebald, W., Hoheisel, J.D., Gauer, C. & Goychuk, I. (2006). Kinetics of antigen binding to antibody microspots: strong limitation by mass transport to the surface. Proteomics 6, 794-803. pdf icon
  323. Syagailo, Y.V., Kusnezow, W. & Hoheisel, J.D. (2006). Microarray-based expression profiling; from technological basics to diagnostic perspectives. Apoptosis and Cancer Therapy (Debatin, K.M. & Fulda, S., eds.), Wiley-VHC, 60-85.
  324. Steinberg, T., Dannewitz, B., Tomakidi, P., Hoheisel, J.D., Mussig, E., Kohl, A. & Nees, M. (2006). Analysis of interleukon-1beta-modulated mRNA gene transcription in human gingival keratinocytes by epithelia-specific cDNA microarrays. J. Periodontal Res. 41, 426-446. pdf icon
  325. Möhrlen, F., Maniura, M., Plickert, G., Frohme, M. & Frank, U. (2006). Evolution of astacin-like metalloproteases in animals and their function in development. Evolut. Develop. 8, 223-231. pdf icon.
  326. Mali, B., Soza Ried, J., Frohme, M. & Frank, U. (2006). Structural but not functional conservation of an immune molecules: a tachylectin-like gene in Hydractinia. Dev. Comp. Immunol. 30, 275-281. pdf icon
  327. Frohme, M. & Hoheisel, J.D. (2006). Representational difference analysis; a methodology to study differential gene expression. Cell Biology: A Laboratory Handbook. 3rd Ed. (Celis, J., ed.), Elsevier, 113-120.

           2005
  328. Nees, M., Kusnezow, W. & Woodworth, C.D. (2005). Microarrays: small spots produce major advances in pharmacogenomics. Novel Anticancer Agents: Strategies for Discovery and Clinical Testing (Adej, A., Buolamwini, J.K., eds.), Elsevier Inc..
  329. Buchholz, M., Kestler, H.A., Bauer, A., Böck, W., Rau, B., Leder, G., Kratzer, W., Bommer, M., Adler, G., Hoheisel, J.D. & Gress, T.M. (2005). Specialized DNA arrays for the differentiation of pancreatic tumors: a solution for a common diagnostic dilemma. Clin. Cancer Res. 11, 8048-8054. pdf icon
  330. Klenin, K.V., Kusnezow, W. & Langowski, J. (2005). Kinetics of protein binding in solid-phase immunoassays: theory. J. Chem. Phys. 122, Art. No. 214715. pdf icon
  331. Rapp, B., Herrmann, D., Guber, A., Welle, A., Schild, D., Jacob, A., Dauber, M. & Hoheisel, J.D. (2005). Mikrotiterplatte mit integrierter funktionalisierter Filterstruktur. Proceed. Mikrosystemtechnik Kongress 2005 (ISBN 3-8007-2926-1), VDE Verlag GmbH, Berlin und Offenbach, 773-776.
  332. Kersten, B., Wanker, E.E., Hoheisel, J.D. & Angenendt, P. (2005). Multiplex approaches in protein microarray technology. Expert Rev. Proteomics 2, 499-510. pdf icon
  333. Marmé, N., Habl, G. & Knemeyer, J.-P. (2005). Aggregation behavior of the red-absorbing oxazine derivative MR 121: A new method for determination of pure dimer spectra. Chem. Phys. Lett. 408, 221-225. pdf icon
  334. Habl, G. Böhm, H., Marmé, N. & Knemeyer, J.-P. (2005). A new assay for single nucleotide polymorphism analysis based on displacement reactions in PNA-DNA double helices. Int. J. Environ. Anal. Chem. 85, 613-623.
  335. Schäfer, G., Müller, M., Hafner, B., Habl, G., Molte, O., Marme, N., Knemeyer, J.-P. (2005). Self-quenching DNA probes based on aggregation of fluorescent dyes. Proc. SPIE 5704, 30.
  336. Staudt, T.M., Knemeyer, L., Kräusslich, H.-G., Knemeyer, J.-P., & Marme, N. (2005). Novel fluorescently labeled enzyme substrates for the sensitive detection of HIV-protease. Proc. SPIE 5704, 112.
  337. Busold, C., Winter, S., Hauser, N., Bauer, A., Dippon, J., Hoheisel, J.D. & Fellenberg, K. (2005). GO-annotations in correspondence analysis facilitate interpretation of microarray data. Bioinformatics 21, 2424-2429. pdf icon
  338. Mund, C., Beier, V., Bewerunge, P., Dahms, M., Lyko, F. & Hoheisel, J.D. (2005). Array-based analysis of genomic DNA methylation patterns of the tumour suppressor gene p16 promoter in colon carcinoma cell lines. Nucleic Acids Res. 33, e73. pdf icon
  339. Angenendt, P. (2005). Progress in protein and antibody microarray technology. Drug Discovery Today 10, 503-511. pdf icon
  340. Beier, V., Mund, C., Schanne, M., Lyko, F. & Hoheisel, J.D. (2005). Characterisation of genomic methylation patterns in tumours. Exocrine Pancreas Cancer (Gress, T.M., Neoptolemos, J.P., Lemoine, N.R. & Real, F.X., eds.), Solvay, 252-258. pdf icon
  341. Buchholz, M., Kestler, H.A., Bauer, A., Hoheisel, J.D. & Gress, T.M. (2005). Development of diagnostic arrays for the differential diagnosis of a pancreatic mass. Exocrine Pancreas Cancer (Gress, T.M., Neoptolemos, J.P., Lemoine, N.R. & Real, F.X., eds.), Solvay, 394-401. pdf icon
  342. Schanne, M., Bodem, J., Kräusslich, H.G., Jacob, A. & Hoheisel, J.D. (2005). Microarray-basierte Resistenzbestimmung in HIV. LaborMedizin & Diagnostik 01.05, 19.
  343. Kusnezow, W., Pulli, T., Syagailo, Y. & Hoheisel, J.D. (2005). Microarray immunoassay of complex specimens; problems and technological challenges. Handbook of Immunohistochemistry & In Situ Hybridisation of Human Carcinomas, Vol. 2 (Hayat, M.A., ed.), 23-35.
  344. Brems, S., Guilbruide, L., Gundlesdodjir-Planck, D., Busold, C., Luu, V.-D., Schanne, M., Hoheisel, J.D. & Clayton, C. (2005). The transcriptomes of Trypanosoma brucei Lister 427 and TREU927 bloodstrem and procyclic trypomastigotes. Mol. Biochem. Parasit. 139, 163-172. pdf icon
  345. Beier, M. & Hoheisel, J.D. (2005). DNA-microarray preparation by light-controlled in situ synthesis. Curr. Protocols Nucleic Acid Chem., Unit 12.5. pdf icon

           2004
  346. Guduric-Fuchs, J., Möhrlen, F., Frohme, M., Frank, U. (2004). A fragile X mental retardation-like gene in a cnidarian. Gene 343, 231–238. pdf icon
  347. Mali, B., Möhrlen, F., Frohme, M. & Frank, U. (2004). A putative double role of a chitinase in a cnidarian: pattern formation and immunity. Develop. Comp. Immunol. 28, 973–981.
  348. Malanchi, I., Accardi, R., Diehl, F., Smet, A., Androphy, E., Hoheisel, J.D. & Tommasino, M. (2004). Human papillomavirus type 16 E6 promotes retinoblastoma protein phosphorylation and cell cycle progression. J. Virol. 78, 13769-13778.
  349. Bey, M., Stüber, K., Fellenberg, K., Schwarz-Sommer, Z., Sommer, H., Saedler, H. & Zachgo, S. (2004). Characterization of Antirrhinum petal development and identification of target genes of the class B MADS-box Gene DEFICIENS. Plant Cell 16, 3197-3215.
  350. Brandt, O. & Hoheisel, J.D. (2004). Peptide nucleic acids on microarrays and other biosensors. Trends Biotechnol. 22, 617-622.
  351. Beier, M. & Hoheisel, J.D. (2004). Synthesis of 3’-O-NPPOC-protected 5’-O-phosphoramidites. Curr. Protocols Nucleic Acid Chem., Unit 12.3.
  352. Beier, M. & Hoheisel, J.D. (2004). Derivatization of solid supports. Curr. Protocols Nucleic Acid Chem., Unit 12.4.
  353. Brandt, R., Grützmann, R., Bauer, A., Jesnowski, R., Ringel, J., Löhr, M., Pilarsky, C. & Hoheisel, J.D. (2004). DNA-microarray analysis of pancreatic malignancies. Pancreatology 4, 587-597.
  354. Brors, B. & Fellenberg, K. (2004). Bioinformatik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 409-440.
  355. Frohme, M. & Wiemann, S. (2004). Funktionelle Genomik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 339-384.
  356. Frohme, M. & Wiemann, S. (2004). Genomik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 287-338.
  357. Arlinghaus, H.F., Schröder, M., Feldner, J.C., Brandt, O., Hoheisel, J.D. & Lipinsky, D. (2004). Development of PNA microarrays for gene diagnostics with TOF-SIMS. Appl. Surface Sci. 231–232, 392–396. pdf icon
  358. Jacob, A., Brandt, O., Stephan, A. & Hoheisel, J.D. (2004). PNA Microarrays. Methods in Molecular Biology (Niemeyer, C., ed.), Humana Press, Totowa, 283-294.
  359. Beier, V., Bauer, A., Baum, M. & Hoheisel, J.D. (2004). Fluorescent sample labelling for DNA-microarray analyses. Methods in Molecular Biology (Niemeyer, C., ed.), Humana Press, Totowa, 127-136.
  360. Hollich, V., Johnson, E., Furlon, E.E., Beckmann, B., Celinker, S. & Hoheisel, J.D. (2004). Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource. Biotechniques 37, 282-284.
  361. Kusnezow, W., Pulli, T., Witt, O. & Hoheisel, J.D. (2004). Solid support for protein microarrays and related devices. Protein Microarrays (Schena, M., Hrsg.), Jones and Bartlett, Sudbury, MA, 247-284.
  362. Fleischer, R., Frohme, M. & Hoheisel, J.D. (2004) Komplexe Microarrays in Krebsforschung und -diagnose. BIOspektrum 04/04, 434-436.
  363. Hagen, I., Ecker, M., Lagorce, A., Francois, J.M., Sestak, S., Rachel., R., Grossmann, G., Hauser, N.C., Hoheisel, J.D., Tanner, W. & Strahl, S. (2004). Sed1p and Srl1p are required to compensate for cell wall instability in Saccharomyces cerevisiae mutants defective in multiple GPI-anchored mannoproteins. Mol. Microbiol. 52, 1413-1425.
  364. Esposito, I., Bauer, A., Hoheisel, J.D., Kleeff, J., Friess, H., Büchler, M.W., Bergmann, F., Rieker, R.J., Otto, H.F., Klöppel, G., & Penzel, R. (2004). Microcystic tubulopapillary carcinoma of the pancreas: a new tumor entity. Virchows Arch. 444, 447-453.
  365. Beier, V. & Hoheisel, J.D. (2004). Charakterisierung von DNA-Methylierungsmustern mit Hilfe von Oligonukleotid-Microarrays. BIOforum 05/04, 31-33.
  366. Boutros, M., Kiger, A.A., Armknecht, S., Kerr, K., Hild, M., Koch, B., Haas, S.A., Beckmann, B., Vingron, M., Sauer, F., Hoheisel, J.D., Paro, R. and Perrimon, N. (2004). Genome-wide RNAi analysis of growth and viability in Drosophila cells. Science 303, 382-385.

           2003
  367. Beckmann, B., Hild, M., Haas, S.A., Koch, B., Solovjev, V., Busold, C., Fellenberg, K, Boutros, M., Vingron, M., Sauer, F., Hoheisel, J.D. & Paro, R. (2003). An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome. Genome Biol. 5, R3.
  368. Yuan, L., An, H.X., Deng, X.L.& Li, Z.Y. (2003). Regulation of leptin on insulin secretion and sulfonulurea receptor 1 transcription level in isolated rats pancreatic islets. Chinese Med. J. 116, 868-872.
  369. Yuan, L., An, H.X., Deng, X.L., Chen, L.L. & Li, Z.Y. (2003). Rosiglitazone reverses insulin secretion altered by chronic exposure to free fatty acid via IRS-2-associated phosphatidylinositol 3-kinase pathway. Acta Pharmacol. Sinica 24, 429-434.
  370. Parker, N.B., Yang, X.D., Hanke, J., Mason, K.A., Schowen, R.L., Borchardt, R.T. & Yin, D.H. (2003). Trypanosoma cruzi: molecular cloning and characterization of the S-adenosylhomocysteine hydrolase. Exp. Parasitol. 105, 149-158.
  371. Hoheisel, J.D. (2003). DNA-Microarrays in der Routine. Forschung & Diagnostik 1, 34-35.
  372. Bauer, A., Beckmann, B., Busold, C., Brandt, O., Kusnezow, W., Pullat, J., Aign, V., Fellenberg, K., Fleischer, R., Jacob, A., Frohme, M. & Hoheisel, J.D. (2003). Use of complex DNA- and antibody-microarrays as tools in functional analyses. Comp. Funct. Genom. 4, 520-524.
  373. Aign, V. & Hoheisel, J.D. (2003). Analysis of nutrient-dependent transcript variations in Neurospora crassa. Fungal Genet. Biol. 40, 225-233.
  374. Jacob, A., Brandt, O., Würtz, S., Stephan, A., Schnölzer, M. & Hoheisel, J.D. (2003). Production of PNA-arrays for nucleic acid detection. Peptide Nucleic Acids; Protocols and Applications (Nielsen, P.E., ed.), Horizon Bioscience, Wymondham, 261-279.
  375. Brandt, O., Feldner, J., Stephan, A., Schröder, M., Schnölzer, M. Arlinghaus, H.F., Hoheisel, J.D. & Jacob, A. (2003). PNA-microarrays for hybridisation of unlabelled DNA-samples. Nucleic Acids Res. 31, e119.
  376. Becerra, M., Lombardía, L.J., González-Siso, M.I., Rodriguez-Belmonte, E., Hauser, N.J., & Cerdán, M.E. (2003). Genome-wide analysis of the yeast transcriptome upon heat and cold shock. Comp. Funct. Genom. 4, 366-375.
  377. Zubakov, D., Hoheisel, J.D., Kluxen, F.-W., Brändle, M., Ehring, T., Hentsch, B. & Frohme, M. (2003). Late ischemic preconditioning of the myocardium alters the expression of genes involved in inflammatory response. FEBS Lett. 547, 51-55. 
  378. Fellenberg, K., Vingron, M., Hauser, N.C. & Hoheisel, J.D. (2003). Correspondence analysis with microarray data. Perspectives in Gene Expression (Appasani, K., ed.), Eaton Publishing, Westborough, 307-343.
  379. Kusnezow, W. & Hoheisel, J.D. (2003). Solid Support for Microarray Immunoassays. J. Mol. Recognit.16, 165-176. 
  380. Hoheisel, J.D. (2003). Humangenetik leicht gemacht. Forum DKG 2/03, 61. 
  381. Löhr, M. & Hoheisel, J.D. (2003). DNA-Chip Technologie beim Pankreaskarzinom. Z. Gastroenterol. 41, 623-624.
  382. Lagorce, A., Hauser, N.C., Labourdette, D., Rodriguez, C., Jasson, S., Arroyo, J., Hoheisel, J.D. & Francois, J.-M. (2003). Genome-wide analysis of the response to cell wall damage in the yeast Saccharomyces cerevisiae. J. Biol. Chem. 278, 20345-20357. 
  383. Scheideler, M. & Hoheisel, J.D. (2003). Analyses de microréseaux d'ADN. Bioforum France 1/03, 24-27.
  384. Yin, Z., Wilson, S., Hauser, N.C., Tournu, H., Hoheisel, J.D. & Brown, A.J.P. (2003). Differential effects of high and low glucose signals upon global expression patterns in yeast. Mol. Microbiol. 48, 713-724. 
  385. Mannhaupt, G., Montrone, C., Haase, D., Mewes, W., Aign, V., Hoheisel, J.D., Fartmann, B., Nyakatura, G., Kempken, F., Maier, J. and Schulte, U. (2003). What‘s in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence. Nucleic Acids Res. 31, 1944-1954. 
  386. Kusnezow, W., Jacob, A., Walijew, A., Diehl, F. & Hoheisel, J.D. (2003). Antibody microarrays: an evaluation of production parameters. Proteomics 3, 254-264. 
  387. Würtz, S., Hanke, J., Solinas-Toldo, S. & Hoheisel, J.D. (2003). Genomanalyse und Gendiagnostik. Grundlagen der molekularen Medizin, 2. Auflage (Ganten, D. & Ruckpaul, K., Eds.); Springer Verlag, 391-440.

           2002
  388. Kusnezow, W. & Hoheisel, J.D. (2002). Antibody Microarrays: Promises and Problems. BioTechniques 33 (suppl.), 14-23. 
  389. Stjepandic, D., Weinel, C., Hilbert, H., Nelson, K.E., Tümmler, B. & Hoheisel, J.D. (2002). The genome structure of Pseudomonas putida; high-resolution mapping and microarray analysis. Environ. Microbiol. 4, 819-823. 
  390. Nelson, K.E., Weinel, C., Paulsen, I.T., Dodson, R.J., Hilbert, H., Martins Dos Santos, V., Fouts, D.E., Gill, S.R., Pop, M., Holmes, M., Brinkac, L., Beanan, M., DeBoys, R., Daugherty, S., Kolonay, J., Madupu, R., Nelson, W., White, O., Peterson, J., Khouri, H., Hance, I., Chris Lee, P., Holtzapple, E., Scanlan, D., Tran, K., Moazzez, A., Utterback, T., Rizzo, M., Lee, K., Kosack, D., Moestl, D., Wedler, H., Lauber, J., Stjepandic, D., Hoheisel, J.D., Straetz, M., Heim. S., Kiewitz, C., Eisen, J., Timmis, K.N., Düsterhoft, A., Tümmler, B., & Fraser, C.M. (2002). The complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol.4, 799-808. 
  391. Diehl, S., Diehl, F., El-Sayed, N.M., Clayton, C. & Hoheisel, J.D. (2002). Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray. Mol. Biochem. Parasit. 123, 115-123. 
  392. Scheideler, M. & Hoheisel, J.D. (2002). DNA-Microarray Analyses; benefits, promises and problems. Screening 5/02, 22-25. 
  393. Diehl, F., Beckmann, B., Kellner, N., Hauser, N.C., Diehl, S. & Hoheisel, J.D. (2002). Manufacturing DNA-microarrays from unpurified PCR-products. Nucleic Acids Res. 30, e79. 
  394. Lombardía, L.J., Becerra, M., Rodríguez-Belmonte, E., Hauser, N.C. & Cerdán, M.E. (2002) Genome-wide analysis of yeast transcription upon calcium shortage. Cell Calcium 32, 83-91. 
  395. Hauser, N.C., Fellenberg, K. & Rupp, S. (2002). How to Discover Pathogenic Mechanisms - New Evaluation Tools Towards Drug Discovery. Screening 3, 28-31.
  396. Hayes, A., Zhang, N., Wu, J., Butler, P.R., Hauser, N.C., Hoheisel, J.D., Lim, F.L., Sharrocks, A.D., Oliver, S.G. (2002) Hybridisation array technology coupled with chemostat culture: tools to interrogate gene expression in Saccharomyces cerevisiae. Methods 26, 281-290. 
  397. Brazma, A., Robinson, A., Vilo, J., Vingron, M., Hoheisel, J.D., Fellenberg, K. & Muilu, J. (2002). ArrayExpress; establishing a public repository for DNA array-based gene expression data. DNA-Chip Technology; Adv. Biochem. Engineering/Biotechnol. 77, 113-139.
  398. Hoheisel, J.D. (ed.) (2002). DNA-Chip Technology; Adv. Biochem. Engineering/Biotechnol. 77.
  399. Beckers, J., Hoheisel, J.D., Mewes, W., Vingron, M. & Hrabé de Angelis, M. (2002). Molecular phenotyping of mouse mutant resources by RNA expression profiling. Curr. Genomics 3, 121-129. 
  400. Frohme, M., Zolk, O., Maurer, A., Kluxen, F.-W., Hentsch, B., Zubakov, D., Hoheisel, J.D., Zucker, I.H., Pepe, S. & Eschenhagen, T. (2002). Cardiac ankyrin repeat protein, a negative regulator of cardiac gene expression, is augmented in human heart failure. Biochem. Biophys. Res. Commun. 293, 1377-1382. 
  401. Scheideler, M., Schlaich, N.L., Fellenberg, K., Beißbarth, T., Hauser, N., Vingron, M., Slusarenko, A.J. & Hoheisel, J.D. (2002). Monitoring the switch from housekeeping to pathogen defence metabolism in Arabidopsis thaliana. J. Biol. Chem. 277, 10555-10561. 
  402. Fellenberg, K., Hauser, N.C., Brors, B., Hoheisel, J.D. & Vingron, M. (2002). Microarray data warehouse allowing for the statistical analysis of experiment annotations. Bioinformatics 18, 423-433. 
  403. Becerra, M., Lombardía-Ferreira, L.J., Hauser, N.J., Hoheisel, J.D., Tizon, B. & Cerdán, M.E. (2002). The yeast transcriptome in aerobic and hypoxic conditions. Effects of HAP1 ROX1 ROX3 and SRB10 deletions. Mol. Microbiol. 43, 545-555.pdf icon
  404. Tauch, A., Homann, I., Mormann, S., Rüberg, S., Billaut, A., Bathe, B., Brand, S., Brockmann-Gretza, O., Rückert, C., Schischka, N., Wrenger, C., Hoheisel, J.D., Mockel, B., Huthmacher, K., Pfefferle, W., Pühler, A. & Kalinowski, J. (2002). Strategy to sequence the genome of Corynebacterium glutamicum ATCC 13032: use of a cosmid and a bacterial artificial chromosome library. J. Biotechnol. 95, 25-38. 
  405. Heber, S., Stoye, J., Frohme, M., Hoheisel, J.D. & Vingron, M. (2002). Resampling methods in physical mapping. Classification, Automation, and New Media; Studies in Classification, Data Analysis, and Knowledge Organization (Gaul, W. & Ritter, G., eds.), Springer Verlag, 437-444.
  406. Hoheisel, J.D. & Cahill, D. (Editorial) (2002). Proteomics and genomics; catching function in action. Curr Opin. Chem. Biol. 6, 11-12. 
  407. Beier, M. & Hoheisel, J.D. (2002). Use of NPE/NPEOC-protected 5'-phosphoramidites for inverse in situ synthesis of oligonucleotides on DNA-microarrays. J. Biotechnol. 94, 15-22. 

           2001
  408. Hoheisel, J.D., Fellenberg, K., Brors, B., Diehl, F., Hauser, N.C. & Vingron, M. (2001). Transkriptionelle Untersuchungen auf DNS-Microarrays; Aspekte der Daten-Evaluation und Interpretation. BIOforum 12/01, 908-910.
  409. Petersohn, A., Brigulla, M., Haas, S., Hoheisel, J.D., Völker, U.& Hecker, M. (2001). Global analysis of the general stress response of Bacillus subtilis. J. Bacteriol. 183, 5617-5631. pdf icon
  410. Hoheisel, J.D., Diehl, F., Scheideler, M., Hauser, N., Aign, V., Matysiak, S. & Beier, M. (2001). Improving DNA-chip technology; chemical aspects. Novel Approaches in Biosensors and Rapid Diagnostic Assays (Liron, Z., Brohmberg, A. and Fisher, M., eds.), Kluwer Academic/Plenum Publishers, London, 165-172. 
  411. Matysiak, S., Reuthner, F. & Hoheisel, J.D. (2001). Automating parallel peptide-synthesis for the production of PNA-library arrays. BioTechniques 31, 896-904. 
  412. Fellenberg, K., Hauser, N.C., Brors, B., Neutzner, A., Hoheisel, J.D. & Vingron, M. (2001). Microarray data analysis by correspondence analysis. Proc. Natl. Acad. Sci. USA 98, 10781-10786. 
  413. Beier, M., Stephan, A. & Hoheisel, J.D. (2001). Synthesis of photolabile 5'-O-phosphoramidites for the production of microarrays of inversely oriented oligonucleotides. Hel. Chim. Acta 84, 2089-2095. 
  414. Hauser, N.C., Fellenberg, K., Rosario, G., Bastuck, S., Hoheisel, J.D. & Perez-Ortin, J.E. (2001). Whole genome analysis of a wine yeast strain. Comp. Funct. Genom. 2, 69-79. 
  415. Frohme, M., Camargo, A., Czink, C., Matsukuma, A.Y., Simpson, A.J.G., Hoheisel, J.D. & Verjovski-Almeida, S. (2001). Directed gap closure in large scale sequencing projects. Genome Res. 11, 901-903. 
  416. Matysiak, S., Reuthner, F. & Hoheisel, J.D. (2001). New developments in Spot-synthesis of PNA-arrays. Innovation and Perspectives in Solid Phase Synthesis and Combinatorial Chemical Libraries (Epton, R., ed.), Mayflower Worldwide, Birmingham, 71-74.
  417. Hoheisel, J.D. & Conway, P.J. (eds.) (2001). Analytical Biotechnology. Curr Opin. Biotechnol. 12 (1). 
  418. Aign, V., Schulte, U. & Hoheisel, J.D. (2001). Hybridisation mapping of Neurospora crassa linkage groups II and V. Genetics 157, 1015-1020. 
  419. Diehl, F., Grahlmann, S., Beier, M. & Hoheisel, J.D. (2001). Manufacturing DNA-microarrays of high spot homogeneity and reduced background signal. Nucleic Acids Res. 29, e38. 
  420. Shen, H.H., Huang, A.-M., Hoheisel, J.D. & Tsai, S.-F. (2001). Identification and characterization of a SET/NAP protein encoded by a brain-specific gene, MB20. Genomics 71, 21–33. 
  421. Hoheisel, J.D. (2001). DNA in me that‘s not my DNA. Trends Biotechnol. 19, 155-156.

           2000
  422. Beißbarth, T., Fellenberg, K., Brors, B., Arribas-Prat, R., Boer, J., Hauser, N.C., Scheideler, M., Hoheisel, J.D., Schütz, G., Poustka, A. & Vingron, M. (2000). Comparison and quality measures of DNA array hybridisation data. Bioinformatics16, 1014-1022. 
  423. Tümmler, B., Kiewitz, C., Weinel, C., Hoheisel, J.D., Düsterhöft, A., Hilbert, H., Moore, E., Strätz, M., Timmis, K.N., Nelson, K.E. & Fraser, C.M. (2000). Sequenzierung und Funktionsanalyse des Pseudomonas putida KT2440 Genoms: Methodik und Ressourcen. Biologische Sicherheit (Hartmann, A, ed.), Forschungszentrum Jülich (ISBN 3-89336-255-X), 251-257.
  424. Hoheisel, J.D. (2000). Das Humangenomprojekt. Humangenetisches Symposium 29, 11-16.
  425. Heber, S., Stoye, J., Frohme, M., Hoheisel, J.D. & Vingron, M. (2000). Contig selection in physical mapping. J. Comput. Biol. 7, 395-408. pdf icon
  426. Campbell, H.D., Fountain, S., Young, I.G., Weitz, S., Lichter, P. & Hoheisel, J.D. (2000). Fliih, the murine homologue of the Drosophila melanogaster flightless-I gene: genomic structure, chromosomal mapping and overlap with Llglh. DNA Sequence 11, 29-40.
  427. Heber, S., Hoheisel, J.D. & Vingron, M. (2000). Application of bootstrap-techniques to physical mapping. Genomics 69, 235-241. 
  428. Heber, S., Stoye, J., Hoheisel, J.D. & Vingron, M. (2000). Contig selection in physical mapping. Proc. Fourth Ann. Internat. Conf. Comput. Mol. Biol. (RECOMB 2000), 155-164.
  429. Hoheisel, J.D. (2000). Editorial on DNA-Chips. BIOforum12/00, 825. 
  430. Frohme, M., Camargo; A.A., Heber, S., Czink, C., Simpson, A.J.D., Hoheisel, J.D. & de Souza, A.P. (2000). Mapping analysis of the Xylella fastidiosa genome. Nucleic Acids Res. 28, 3100-3104. 
  431. Frohme, M., Scharm, B., Delius, H., Knecht, R. & Hoheisel, J.D. (2000). Use of representational difference analysis and cDNA-arrays for transcriptional profiling of tumour tissue. Ann. N.Y. Acad. Sci. 910, 85-104.
  432. Frohme, M., Hauser, N., Scheideler, M., Diehl, F., Beier, M., Würtz, S. & Hoheisel, J.D. (2000). Chips, arrays and other hybridisation based techniques for genome and transcriptome characterisation. Molecular Pathogenesis of Pancreatic Cancer (Gress, T., ed.), IOS Press, Amsterdam, 88-94.
  433. Hoheisel, J.D. & Vingron, M. (2000). Transcriptional profiling: is it worth the money? Res. Microbiol. 151, 113-119. 
  434. Simpson, A.J.G., et al., Hoheisel, J.D., et al. & Setubal, J.C. (2000). The genome sequence of the plant pathogen Xylella fastidiosa. Nature 406, 151-157. 
  435. Hoheisel, J.D. & Beier, M. (2000). DNS-Chips/elektronische Chips, grundverschieden und doch ähnlich. Dechema Tätigkeitsbericht.1999, 8-11.
  436. Hoheisel, J.D. (2000). ... and counting: DNA-microarrays. Proceedings Int. Conf. Genomics and Proteomics: Functional and Computational Aspects (Suhai, S., ed.), Plenum Publishing, New York, 1-3.
  437. Wambutt, R. et al., Hoheisel, J.D. et al. & Bevan, M. (2000). Progress in Arabidopsis genome sequencing and functional genomics. J. Biotechnol. 78, 281-292. 
  438. Beier, M. & Hoheisel, J.D. (2000). Production by quantitative photolithographic synthesis of individually quality-checked DNA microarrays. Nucleic Acids Res. 28, e11. 
  439. Beier, M., Matysiak, S., Hauser, N., Scheideler, M., Würtz, S., Fellenberg, K., Vingron, M. & Hoheisel, J.D. (2000). DNA microchips; transcriptional profiling and beyond. Chimia 54, 29-30.

           1999
  440. Hanke, J. & Hoheisel, J.D. (1999). Construction and screening of cosmid libraries. The Nucleic Acids Protocols Handbook - Methods in Molecular Biology (Rapley, R., ed.), Humana Press, Totowa, 405-414.
  441. The European Union Arabidopsis Genome Sequencing Consortium (1999). Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature 402, 769-777. 
  442. Hoheisel, J.D. (1999). DNS-Chips - Technologie mit Zukunft. Biotechnologie-Agentur Baden-Württemberg 4, 6.
  443. Li, Z., Rossi, E.A., Hoheisel, J.D., Kalderon, D. & Rubin, C.S. (1999). Generation of a novel A kinase anchor protein and a myristoylated alanine-rich C kinase substrate-like analog from a single gene. J. Biol. Chem. 274, 27191-27200. 
  444. Wallrapp, C., Müller-Pillasch, F., Micha, A., Wenger, C., Geng, M., Solinas-Toldo, S., Lichter, P., Frohme, M., Hoheisel, J.D., Adler, G. & Gress, T.M. (1999). Strategies for the detection of disease genes in pancreatic cancer. Ann. N.Y. Acad. Sci. 880, 122-146.
  445. Wallrapp, C., Müller-Pillasch, F., Micha, A., Wenger, C., Geng, M., Solinas-Toldo, S., Lichter, P., Frohme, M., Hoheisel, J.D., Adler, G. & Gress, T.M. (1999). Novel technologies for detection of genomic and transcriptional alterations in pancreatic cancer. Ann. Oncology 10, suppl. 4, S64-S68. 
  446. Geng, M., Wallrapp, C., Müller-Pillasch, F., Frohme, M., Hoheisel, J.D. & Gress, T. (1999). Isolation of differentially expressed genes by combining representational difference analysis (RDA) and cDNA library arrays. Expression Genetics: Accelerated and High-Throughput Methods Book (McClelland, M. & Pardee, A., eds.), Biotechniques Books, Natick, 145-153.
  447. Matysiak, S., Hauser, N.C., Würtz, S. & Hoheisel, J.D. (1999). Improved solid supports and spacer/linker systems for the synthesis of spatially addressable PNA-libraries. Nucleosides & Nucleotides 18, 1289-1291.
  448. Beier, M. & Hoheisel, J.D. (1999). New developments in light-controlled synthesis of DNA-arrays. Nucleosides & Nucleotides 18, 1301-1304.
  449. Weiler, J., Matysiak, S., Gausepohl, H. & Hoheisel, J.D. (1999). New developments in hybridisation based DNA screening on oligomer arrays. Solid Phase Synthesis - Peptides, Proteins and Nucleic Acids (Epton, R., ed.), Mayflower Worldwide, 93-96.
  450. Beier, M. & Hoheisel, J.D. (1999). Versatile derivatisation of solid support media for covalent bonding on DNA-microchips. Nucleic Acids Res. 27, 1970-1977. 
  451. Matysiak, S., Würtz, S., Hauser, N., Gausepohl, H. & Hoheisel, J.D. (1999). PNA-arrays for nucleic acid detection. Peptide Nucleic Acids: Protocols and Applications (Nielsen, P. & Egholm, M., eds.), Horizon Scientific Press, Wymondham, 119-128.
  452. Hoheisel, J.D. (1999). DNS-Chip Technologie - eine Herausforderung. med. genetik 11, 4-5.
  453. Vingron, M. & Hoheisel, J.D. (1999). Computational aspects of expression data analysis. J. Mol. Med. 77, 3-7.

           1998
  454. Craig, A. & Hoheisel, J.D. (eds.) (1998). Methods in Microbiology 28 - Automation. Academic Press.
  455. Hauser, N.C., Scheideler, M., Matysiak, S., Vingron, S. & Hoheisel, J.D. (1998). DNA arrays for transcriptional profiling. Methods in Microbiology 28 - Automation (Craig, A. & Hoheisel, J.D., eds.), Academic Press, 193-204.
  456. Persson, K., Åslund, L., Grahn, B., Hanke, J. & Heby, O. (1998). Characterization of the Trypanosoma cruzi S-adenosylmethionine decarboxylase gene and the encoded enzyme. Biochem. J. 333, 527-537. pdf icon
  457. Geng, M., Wallrapp, C., Müller-Pillasch, F., Frohme, M., Hoheisel, J.D. & Gress, T. (1998). Isolation of differentially expressed genes by combining representational difference analysis (RDA) and cDNA library arrays. BioTechnique 25, 434-438. 
  458. Hoheisel, J.D. & Vingron, M. (1998). DNS-Chip Technologie. BioSpektrum 6, 17-20. (reprinted 1999 in Biochemica 3, 31-35.)
  459. Andersson, B., Åslund, L., Hoheisel, J.D. & Pettersson, U. (1998). 93.4 kb of complete sequence from chromosome 3 of Trypanosoma cruzi containing a strand switch region. Genome Res. 8, 809-816. 
  460. Hauser, N.C., Vingron, M., Scheideler, M., Krems, B., Hellmuth, K., Entian, K.-D. & Hoheisel, J.D. (1998). Transcriptional profiling on all open reading frames of Saccharomyces cerevisiae. Yeast 14, 1209-1221. 
  461. Chan, H.Y.E., Zhang, Y., Hoheisel, J.D. & O'Kane, C.J. (1998) Identification and characterisation of the gene for Drosophila L3 ribosomal protein. Gene 212, 119-125. 
  462. Hauser, N., Scheideler, M. & Hoheisel, J.D. (1998). DNS-Chip Technologie zur Untersuchung von Genaktivität. Krebsforschung heute 98 (Stamatiadis-Smidt, M.A., Ed.); Steinkopff Verlag, 190-193.
  463. Gausepohl, H., Weiler, J., Schwarz, S., Fitzpattrick, R. & Hoheisel, J.D. (1998). Synthesis of large PNA arrays on membranes using the SPOT method. Peptides 1996 - Proceedings of the 24th Symposium of the European Peptide Society (Ramage, R., and Epton, R., eds.), Mayflower Scientific Ltd., 411-412.
  464. Scholler, P., Heber, S. & Hoheisel, J.D. (1998). Optimisation and automation of fluorescence-based DNA hybridisation for high-throughput clone mapping. Electrophoresis 19, 504-508.
  465. Hanke, J., Frohme, M., Laurent, J.P., Swindle, J. & Hoheisel, J.D. (1998). Hybridisation mapping of Trypanosoma cruzi chromosomes III and IV. Electrophoresis 19, 482-485.
  466. Frohme, M., Hanke, J., Åslund, L., Pettersson, U. & Hoheisel, J.D. (1998). Selective generation of chromosomal cosmid libraries within the Trypanosoma cruzi genome project. Electrophoresis 19, 478-481.

           1997
  467. Krebber, H., Bastians, H., Hoheisel, J.D., Lichter, P., Ponstingl, H. & Joos, S. (1997). Localisation of the gene encoding the Ran-binding protein RanBP2 to human chromosome 2q11-13 by fluorescence in situ hybridisation. Genomics 43, 247-248. 
  468. Weiler, J. & Hoheisel, J.D. (1997). Picomole synthesis of high quality oligonucleotide primers in combination with the preparation of oligonucleotide arrays. Nucl. & Nucl. 16, 1793-1796.
  469. Hoheisel, J.D. (1997). Oligomer chip technology. Trends Biotechnol.15, 465-469. 
  470. Weiler, J., Hauser, N. & Hoheisel, J.D. (1997). New developments in oligomer array technologies. Nucl. & Nucl. 16, 777-780.
  471. Christodoulou, S., Lockyer, A.E., Foster, J.M., Hoheisel, J.D. & Roberts, D.B. (1997). Nucleotide sequence of a Drosophila melanogaster cDNA encoding a clanexin homologue. Gene 191, 143-148. 
  472. Weiler, J., Gausepohl, H., Hauser, N., Jensen, O.N. & Hoheisel, J.D. (1997). Hybridisation based DNA screening on peptide nucleic acid (PNA) oligonucleotide arrays. Nucleic Acids Res. 25, 2792-2799. 
  473. Hanke, J., Solinas-Toldo, S. & Hoheisel, J.D. (1997). Genomanalyse und Gendiagnostik. Handbuch der molekularen Medizin, Band 1 (Ganten, D. & Ruckpaul, K., Eds.); Springer Verlag, pp. 51-91.
  474. Ohkura, H., Török, T., Tick, G., Hoheisel, J.D., Kiss, I. & Glover, D.M. (1997). Mutation of a gene for a Drosophila kinesin like protein, Klp38B, leads to failure of cytokinesis. J. Cell Science 110, 945-954. 
  475. Bastians, H., Krebber, H., Hoheisel, J.D., Ohl, S., Lichter, P., Ponstingl, H. & Joos, S. (1997). Assignment of the human serine/threonine protein phosphatase 4 gene (PPP4C) to chromosome 16p11.2-12.1 by fluorescence in situ hybridisation. Genomics 42, 181-182. 
  476. Campbell, H.D., Fountain, S., Young, I.G., Claudianosll, C., Hoheisel, J.D., Chen, K.-S. & Lupski, J.R. (1997). Genomic structure, evolution and expression of human fli, a gelsolin and leucine-rich-repeat family member: linkage to HUGL. Genomics 42, 46-54. 
  477. Johnston, M., Hillier, L., Riles, L., Albermann, K., André, B., Ansorge, W., Benes, V., Brückner, M., Delius, H., Dubois, E., Düsterhöft, A., Entian, K.-D., Floeth, M., Goffeau, A., Hebling, U., Heumann, K., Heuss-Neitzel, D., Hilbert, H., Hilger, F., Kleine, K., Kötter, P., Louis, E.J., Messenguy, F., Mewes, H.W., Miosga, T., Möstl, D., Müller-Auer, S., Nentwich, U., Obermaier, B., Piravandi, E., Pohl, T.M., Portetelle, D., Purnelle, B., Rechmann, S., Rieger, M., Rinke, M., Rose, M., Scharfe, M., Scherens, B., Scholler, P., Schwager, C., Schwarz, S., Underwood, A. P., Urrestarazu, L. A., Vandenbol, M., Verhasselt, P., Vierendeels, F., Voet, M., Volckaert, G., Voss, H., Wambutt, R., Wedler, E., Wedler, H., Zimmermann, F. K., Zollner, A., Hani, J. & Hoheisel, J.D. (1997). The complete sequence of Saccharomyces cerevisiae chromosome XII. Nature 387 (suppl.), 87-90.
  478. Jacq, C., et al., Hoheisel, J.D., et al. (1997). The nucleotide sequence of chromosome IV of Saccharomyces cerevisiae. Nature 387 (suppl.), 75-78.
  479. Goffeau, A. et al., Hoheisel, J.D., et al. (1997) Yeast Genome Directory. Nature 387 (suppl.), 5.
  480. Gress, T.M., Wallrapp, C., Frohme, M., Müller-Pillasch, F., Lacher, U., Friess, H., Büchler, M., Adler, G. & Hoheisel, J.D. (1997). Identification of genes with specific expression in pancreatic cancer by use of cDNA representational difference analysis. Genes Chrom. Cancer 19, 97-103. 
  481. Bastians, H., Krebber, H., Vetrie, D., Hoheisel, J.D., Lichter, P., Ponstingl, H. & Joos, S. (1997). Localisation of the novel serine/threonine protein phosphatase 6 gene (PPP6C) to human chromosome Xq22.3. Genomics 41, 296-297. 
  482. Werner, E., Holder, A.A. & Hoheisel, J.D. (1997). Growth and storage of YAC-clones in Hogness Freezing Medium. Nucleic Acids Res. 25, 1467-1468. 
  483. The Trypanosoma cruzi genome consortium: Zingales, B., Rondinelli, E., Degrave, W., da Silveira, J.F., Levin, M., Le Paslier, D., Modabber, F., Dobrokhotov, B., Swindle, J., Kelly, J. M., Åslund, L., Hoheisel, J.D., Ruiz, A.M., Cazzulo, J.J., Pettersson, U. & Frasch, A.C. (1997). The Trypanosoma cruzi genome initiative. Parasitol. Today 13, 16-21. pdf icon

           1996
  484. Weiler, J. & Hoheisel, J.D. (1996). Combining the preparation of oligonucleotide arrays and synthesis of high quality primers. Anal. Biochem. 243, 218-227. pdf icon
  485. Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H. & Oliver, S.G. (1996). Life with 6000 genes. Science 274, 546-567. pdf icon
  486. Scholler, P., Benes, V., Voss, H., Ansorge, W. & Hoheisel, J.D. (1996). Sequencing 39,350 bp of Saccharomyces cerevisiae chromosome XII utilising ordered shotgun libraries. DNA Sequence 6, 257-262.
  487. Hanke, J., Sánchez, D.O., Henriksson, J., Åslund, L., Pettersson, U., Frasch, A.C.C. & Hoheisel, J.D. (1996). Towards the mapping of the Trypanosoma cruzi genome; analyses on a representative cosmid library. BioTechniques 21, 686-693. pdf icon
  488. Hoheisel, J.D., Maier, E., Mott, R. & Lehrach, H. (1996). Integrated genome mapping by hybridization techniques. Analysis of Non-Mammalian Genomes - A Practical Guide (Birren, B. & Lai, E., Eds.), Academic Press, pp. 319-346.
  489. Hoheisel, J.D. (1996). Sequence-independent and linear variation of oligonucleotide DNA-binding stabilities. Nucleic Acids Res. 24, 430-432. pdf icon

           1995
  490. Scholler, P., Karger, A.E., Meier-Ewert, S., Lehrach, H., Delius, H. & Hoheisel, J.D. (1995). Fine-mapping of shotgun template-libraries; an efficient strategy for the systematic sequencing of genomic DNA. Nucleic Acids Res. 23, 3842-3849. pdf icon
  491. Lin, W.-H., Huang, L.-H., Yeh, J.-Y., Hoheisel, J.D., Lehrach, H., Sun, Y.H. & Tsai, S.-H. (1995). A Drosophila GATA transcription factor is expressed in multiple tissues in the developing embryos. J. Biol. Chem. 270, 25150-25158. pdf icon
  492. Stephen W. Scherer & Hoheisel, J.D. (1995). Genome analysis. Mol. Med. Today 1, 258-259. pdf icon
  493. Cornell, M.J., William, T.A., Coates, D., Corvol, R., Soubrier, F., Hoheisel, J.D., Lehrach, H. & Isaac, R.E. (1995). Cloning and expression of an evolutionary conserved single-domain angiotensin converting enzyme from Drosophila melanogaster. J. Biol. Chem. 270, 13613-13619. pdf icon
  494. Scholler, P., Schwarz, S. & Hoheisel, J.D. (1995). High-resolution cosmid mapping of the left arm of Saccharomyces cerevisiae chromosome XII; a first step towards an ordered sequencing approach. Yeast 11, 659-666. pdf icon
  495. Chen, K.-S., Nguyen, D., Hoheisel, J.D., Young, I.G., Miklos, G.L.G., Greenberg, F., Shaffer, L.G., Campbell, H.D. & Lupski, J.R. (1995). The Drosophila melanogaster flightless-I gene (fliI) human homologue maps within the Smith-Magenis microdeletion critical region in 17p11.2. Am. J. Hum. Genet. 56, 175-182.

           1994
  496. Hoheisel, J.D. (1994). Creation of a rare-cutter multiple-cloning site. BioTechniques 17, 456-460.
  497. Hoheisel, J.D., Ross, M.T., Zehetner, G. & Lehrach, H. (1994). Relational genome analysis using reference libraries and hybridisation fingerprinting. J. Biotechnol. 35, 121-134. pdf icon
  498. Hoheisel, J.D. (1994). Application of hybridisation techniques to genome mapping and sequencing. Trends Genet. 10, 79-83. pdf icon
  499. Maier, E., Hoheisel, J.D. & Lehrach, H. (1994). Ordered clone libraries as high resolution mapping tools. Proceedings of the 6th European Congress on Biotechnology (Alberghina, L., Frontali, L. & Sensi, P., eds.), Elsevier, pp. 191-194.

           1993    (Publications of Jörg D. Hoheisel prior to joining DKFZ)
  500. Hoheisel, J.D., Maier, E., Meier-Ewert, S. & Lehrach, H. (1993). Relational genome analysis based on hybridisation techniques. Ann. Biol. Clin. 50, 827-829.
  501. Hoheisel, J.D. & Lehrach, H. (1993). Use of reference libraries and hybridisation fingerprinting for relational genome analysis. FEBS Lett. 325, 118-122. pdf icon
  502. Mott, R., Grigoriev, A., Maier, E., Hoheisel, J.D. & Lehrach, H. (1993). Algorithms and software tools for ordering clone libraries; application to the mapping of the genome of Schizosaccharomyces pombe. Nucleic Acids Res. 21, 1965-1974. pdf icon
  503. Hoheisel, J.D., Maier, E., Mott, R., McCarthy, L., Grigoriev, A.V., Schalkwyk, L.C., Nizetic, D., Francis, F. & Lehrach, H. (1993). High-resolution cosmid and P1 maps spanning the 14-Mbp genome of the fission yeast Schizosaccharomyces pombe. Cell 73, 109-120.
  504. Hoheisel, J.D. (1993). On the activities of Escherichia coli Exonuclease III. Anal. Biochem. 209, 238-246. pdf icon

           1992
  505. Gress, T.M., Hoheisel, J.D., Lennon, G.G., Zehetner, G. & Lehrach, H. (1992). Hybridisation fingerprinting of high density cDNA-library arrays with cDNA pools derived from whole tissues. Mamm. Genomes 3, 609-619. pdf icon
  506. Maier, E., Hoheisel, J.D., McCarthy, L., Mott, R., Grigoriev, A.V., Monaco, A.P., Larin, Z. & Lehrach, H. (1992). Yeast artificial chromosome clones completely spanning the genome of Schizosaccharomyces pombe. Nature Genet. 1, 273-277. pdf icon
  507. Ross, M.T., Hoheisel, J.D., Monaco, A.P., Larin, Z., Zehetner, G. & Lehrach, H. (1992). High-density gridded YAC filters: their potential as genome mapping tools. Techniques for the Analysis of Complex Genomes (Anand, R. ed.), Academic Press, pp. 137-154.

           1991
  508. Freese, S., Hoheisel, J.D., Lehrach, H. & Wright, G. (1991). N2-substituted-2'-deoxyguanosine 5'-triphosphates as substrates for E. coli DNA polymerase I. Nucleosides & Nucleotides 10, 1507-1524.
  509. Hoheisel, J.D., Lennon, G.G., Zehetner, G. & Lehrach, H. (1991). Use of high coverage reference libraries of Drosophila melanogaster for relational data analysis; a step towards mapping and sequencing of the genome. J. Mol. Biol. 220, 903-914. pdf icon
  510. Hoheisel, J.D., Drmanac, R., Larin, Z., Lennon, G., Monaco, A.P., Nizetic, D., Ross, M., Zehetner, G. & Lehrach, H. (1991). Use of high coverage libraries for an integrated analysis of genomic DNA. Genome Analysis: From Sequence to Function (Collins, J. & Driesel, A.J. eds.), Advances Mol. Gen. 4, Hüthig Buch Verlag, pp. 125-132.

           1990
  511. Lehrach, H., Drmanac, R., Hoheisel, J.D., Larin, Z., Lennon, G., Monaco, A.P., Nizetic, D., Zehetner, G. & Poustka, A. (1990). Hybridisation fingerprinting in genome mapping and sequencing. Genome Analysis Volume 1: Genetic and Physical Mapping (Davies, K.E. & Tilghman, S. eds.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY), pp. 39-81.
  512. Hoheisel, J.D. & Lehrach, H. (1990). Quantitative measurements on the duplex stability of 2.6-diaminopurine and 5-chloro-uracil nucleotides using enzymatically synthesized oligomers. FEBS Lett. 274, 103-106. pdf icon
  513. Hoheisel, J.D. (1990). Extension of a pUC18-like polylinker by the octanucleotide recognition sites of NotI, FseI, SfiI and PacI. Trends Genet. 6, 346. pdf icon
  514. Hoheisel, J.D., Craig, A.G. & Lehrach, H. (1990). Effect of 5-bromo and 5-methyl deoxycytosine on duplex stability and discrimination of the NotI octadeoxynucleotide; quantitative measurements using thin-layer chromatography. J. Biol. Chem. 265, 16656-16660. pdf icon
  515. Craig, A., Nizetic, D., Hoheisel, J.D., Zehetner, G. & Lehrach, H. (1990). Ordering of cosmid clones covering the Herpes Simplex Virus Type I (HSV-I) genome: a test case for fingerprinting by hybridisation. Nucleic Acids Res. 18, 2653-2660. pdf icon

           1989
  516. Hoheisel, J.D., Nizetic, D. & Lehrach, H. (1989). Control of partial digestion combining the enzymes Dam methylase and MboI. Nucleic Acids Res. 17, 4571-4582. pdf icon
  517. Craig, A., Nizetic, D., Hoheisel, J.D., Monaco, A.P., Zehetner, G., Lennon, G., Young, B. & Lehrach, H. (1989). Long-range ordering of clones by probe fingerprinting. Polymerase Chain Reaction (Erlich, H.A., Gibbs, R.A. & Kazazian, H.H. eds.), Curr. Comm. Mol. Biol., Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY), pp. 205-210.
  518. Hoheisel, J.D. (1989). Ultrafast Microprep protocol for large-number preparations of recombinant plasmids and cosmids. Technique 1, 21-27. pdf icon
  519. Hoheisel, J.D. (1989). A cassette with seven unique restriction sites, including octanucleotide sequences: extension of multiple-cloning-site plasmids. Gene 80, 151-154. pdf icon

           1986-1988
  520. Hoheisel, J.D. (1988). Untersuchung verschiedener, topologisch induzierter DNS-Sekundärstrukturen. (Thesis) Hartung-Gorre Verlag, Konstanz, ISBN 3-89191-177-7.
  521. Hoheisel, J.D. & Pohl, F.M. (1987). Searching for potential Z-DNA in genomic Escherichia coli DNA. J. Mol. Biol. 193, 447-464. pdf icon
  522. Hoheisel, J.D. & Pohl, F.M. (1986). Simplified preparation of unidirectional deletion clones. Nucleic Acids Res. 14, 3605. pdf icon









 Patents
For further information, please, contact Dr. Jörg Hoheisel or the DKFZ Technology Transfer Office.


















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