Functional Genome Analysis  (B070)
Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 580
D-69120 Heidelberg, Germany.




 Publications Apart from publications in scientific journals, the division filed a total of 46 patents since 1995.



    2023 to 1994  (to 1986)
  1. Hufnagel, K., Fathi, A., Stroh, N., Klein, M., Skwirblies, F., Girgis, R., Dahlke, C., Hoheisel, J.D., Lowy, C., Schmidt, R., Griesbeck, A., Merle, U., Addo, M.M. & Schröder, C. (2023). Discovery and systematic assessment of early biomarkers predicting a severe COVID-19 disease. Comm. Med. 3, 51. pdf icon
  2. Leichner, G.S., Schweitzer, I., Dror, S., Levin, L., Geva, P., Shapira, G., Zaremba, L., Shomron, N., Barzilai, A., Hoheisel, J.D., Levy, C. & Greenberger, S. (2023). Primary melanoma miRNAs trafficking induce lymphangiogenesis. J. Invest. Dermatol., in press. pdf icon
  3. Njouendou, A.J., Tiofack, A.A.Z., Kenfack, R.N., S Ananga, S.N., Dina Bell, E.H.M., Simo, G., Hoheisel, J.D., Siveke, J.T. & Lueong, S.S. (2023). SOX2 dosage sustains tumor-promoting inflammation to drive disease aggressiveness by modulating the FOSL2/IL6 axis. Mol. Cancer 22, 52. pdf icon
  4. Zhang, C., Al-Shaheri, F., Alhamdani, M.S.S., Bauer, A.S., Hoheisel, J.D., Schenk, M., Al-Halabi, K., Büchler, M.W., Giese, N.A., Hackert, T. & Roth, S. (2023). Blood-based diagnosis and risk stratification of patients with pancreatic intraductal papillary mucinous neoplasm (IPMN). Clin. Cancer Res. 29, 1535-1545. pdf icon

  5. Heid, I., Münch, C., Karakaya, S., Lueong, S.S., Winkelkotte, A.M., Liffers, S.T., Godfrey, L., Cheung, P.F.Y., Savvatakis, K., Topping, G.J., Englert, F., Kritzner, L., Grashei, M., Tannapfel, A., Viebahn, R., Wolters, H., Uhl, W., Vangala, D., Smeets, E.M.M., Aarntzen, E.H.J.G., Rauh, D., Weichert, W., Hoheisel, J.D., Hahn, S., Schilling, F., Braren, R., Trajkovic-Arsic, M. & Siveke, J.T. (2022). Functional non-invasive detection of glycolytic pancreatic ductal adenocarcinoma. Cancer Metab. 10, 24.
  6. Manoochehri, M., Borhani, N., Gerhäuser, C., Assenov, Y., Schönung, M., Hielscher, T., Christensen, B.C., Lee, M.K., Gröne, H.-J., Lipka, D.B., Brüning, T., Brauch, H., Ko, Y.-D. & Hamann, U. (2022). DNA methylation biomarkers for non-invasive detection of triple negative breast cancer using liquid biopsy. Int. J. Cancer 52, 1025-1035.
  7. Rashid, M.U., Muhammad, N., Shehzad, U., Khan, F.A., Loya, A. & Hamann, U. (2022). Prevalence of FANCM germline variants in BRCA1/2 negative breast and/or ovarian cancer patients from Pakistan. Fam. Cancer, 22, 31-41.
  8. Dixon-Suen, S.C., Lewis, S.J., Martin, R.M., English, D.R., Boyle, T., Giles, G.G., et al. (2022). Physical activity, sedentary time and breast cancer risk: a Mendelian randomisation study. Br. J. Sports Med. 56, 1157-1170.
  9. Hakkaart, C., Pearson, J.F., Marquart, L., Dennis, J., Wiggins, G.A.R., Barnes, D.R., et al. (2022). Copy number variants as modifiers of breast cancer risk for BRCA1/BRCA2 pathogenic variant carriers. Commun. Biol. 5, 1061.
  10. Giardiello, D., Hooning, M.J., Hauptmann, M., Keeman, R., Heemskerk-Gerritsen, B.A.M., Becher, H., Blomqvist, C., et al. (2022). PredictCBC-2.0: a contralateral breast cancer risk prediction model developed and validated in ~200,000 patients. Breast Cancer Res. 24, 69.
  11. Babaeenezhad, E., Naghibalhossaini, F., Rajabibazl, M., Jangravi, Z., Moradi, F.H., Fattahi, M.D., Hoheisel, J.H., Sarabi, M.M. & Shahryarhesami, S. (2022). The roles of microRNA miR-185 in digestive tract cancers. ncRNA 8, 67.
  12. Brindl, N., Boekhoff, H., Calderazzo, S., Bauer, A.S., Gaida, M.M., Dang, H.T., Kaiser, J., Hoheisel, J.D. & Felix, K. (2022). Use of autoreactive antibodies in blood of patients with pancreatic intraductal papillary mucinous neoplasms (IPMNs) for stage distinction and detection of malignancy. Cancers 14, 3562.
  13. Mohammadi, A., Najafi, S., Amini, M., Mansouri,B., Baghbanzadeh, A., Hoheisel, J.D. & Baradaran, B. (2022). The potential of B7-H6 as therapeutic target in cancer immunotherapy. Life Sci. 304, 120709.
  14. Grootes, I., Keeman, R., Blows, F.M., Milne, R.L., Giles, G.G., Swerdlow, A.J., Fasching, P. A., et al. (2022). Incorporating progesterone receptor expression in the PREDICT Breast prognostic model. Eur. J. Can. 173, 178-193.
  15. Jung, A.Y., Ahearn, T.U., Behrens, S., et al. (2022). Distinct reproductive risk profiles for intrinsic-like breast cancer subtypes: pooled analysis of population-based studies. J. Natl. Cancer Inst., djac117.
  16. Li, S., Silvestri, V., Leslie, G., Rebbeck, T.R., Neuhausen, S.L., Hopper, J.L., et al. (2022). Cancer risks associated with BRCA1 and BRCA2 pathogenic variants. J. Clin. Oncol. 40, 1529-1541.
  17. Li, H., et al.; ENIGMA Consortium; CIMBA Consortium (2022). Risks of breast and ovarian cancer for women harboring pathogenic missense variants in BRCA1 and BRCA2 compared with those harboring protein truncating variants. Genet. Med. 24, 119-129.
  18. Dorling, L., Carvalho, S., Allen, J., et al. (2022). Breast cancer risks associated with missense variants in breast cancer susceptibility genes. Genome Med. 14, 51.
  19. Wang, X., Kapoor, P.M., Auer, P.L., et al. (2022). Genome-wide interaction analysis of menopausal hormone therapy use and breast cancer risk among 62,370 women. Sci. Rep. 12, 6199.
  20. Rashid, M.U., Muhammad, N., Naeemi, H., Shehzad, U. & Hamann U. (2022). Chasing the origin of 23 recurrent BRCA1 mutations in Pakistani breast and ovarian cancer patients. Int. J. Cancer 151, 402-411.
  21. Vargas, E., de Deugd, R., Villegas, V.E., Gil, F., Mora, L., Viaña, L.F., Bruges, R., Gonzalez, A., Galvis, J.C., Hamann, U. & Torres, D. (2022). Prevalence of BRCA1 and BRCA2 germline mutations in patients of African descent with early-onset and familial colombian breast cancer. The Oncologist 27, e151-e157.
  22. Dareng, E. O., Tyrer, J. P., Barnes, D. R., Jones, M. R., Yang, X., Aben, K., et al. (2022). Polygenic risk modeling for prediction of epithelial ovarian cancer risk. Eur. J. Hum. Genet. 30, 349-362.
  23. Breast Cancer Association Consortium: Mavaddat, N., Dorling, L., Carvalho, S., Allen, J., González-Neira, A., et al. (2022). Pathology of tumors associated with pathogenic germline variants in 9 breast cancer susceptibility genes. JAMA Oncol. 8, e216744.
  24. Ahearn, T.U., Zhang, H., Michailidou, K., Milne, R.L., Bolla, M.K., Dennis, J., et al. (2022). Common variants in breast cancer risk loci predispose to distinct tumor subtypes. Breast Cancer Res. 24, 2.
  25. Barkowsky, G., Abt, C., Pöhner, I., Bieda, A., Hammerschmidt, S., Jacob, A., Kreikemeyer, B. & Patenge, N. (2022). Antimicrobial Activity of Peptide-Coupled Antisense Peptide Nucleic Acids in Streptococcus pneumoniae. Microbiol. Spectr. 10, e00497-00422.
  26. Branco, L.M., Amaral, M.P., Boekhoff, H., de Lima, A.B.F., Farias, I.S., Lage, S.L., Pereira, P.J.S., Franklin, B.S. & Bortoluci, K.R. (2022). Lysosomal cathepsins act in concert with Gasdermin-D during NAIP/NLRC4-dependent IL-1β secretion. Cell Death Dis. 13, 1029.
  27. Gavillero, A., García-Casado, Z., Requena, C., Manrique-Silva E., Traves, V., Kumar, R. & Nagore, E. (2022). Differences by Anatomical Site of Non-Acral Lentiginous Melanomas of the Lower Limb. Dermatology 238, 977-998.
  28. Li, L., Liu, S., Peng, L., Zhang, Y., Zhang, Y., Zeng, H., Li, G. & Zhang, C. (2022). The identification and preliminary study of lncRNA TUG1 and its related genes in hepatocellular carcinoma. Arch. Med. Sci. 6, 1582-1595.
  29. Paris, G., Heidepriem, J., Tsouka, A., Liu, Y., Mattes, D.S., Martín, S.P., Dallabernardina, P., Mende, M., Lindner, C., Wawrzinek, R., Rademacher, C., Seeberger, P.H., Breitling, F., Bischoff, R., Wolf, T. & Loeffler, F.F. (2022). Automated laser-transfer synthesis of high-density microarrays for infectious disease screening. Adv. Mater. 34, e2200359.
  30. Peng, J.-Y., Cai, D.-K., Zeng, R.-L., Zhang, C., Li, G.-C., Chen, S.-F., Yuan, X.-Q. & Peng, L. (2022). Upregulation of Superenhancer-Driven LncRNA FASRL by USF1 Promotes De Novo Fatty Acid Biosynthesis to Exacerbate Hepatocellular Carcinoma. Adv. Sci. 10, 2204711.
  31. Peng, L., Zhou, N., Zhang, C., Li, G.-C. & Yuan, X.-Q. (2022). eccDNAdb: a database of extrachromosomal circular DNA profiles in human cancers. Oncogene 41, 2696-2705.
  32. Russo, G., Unkauf, T., Meier, D., Wenzel, E.V., Langreder, N., Schneider, K.-T., Wiesner, R., Bischoff, R., Stadler, V. & Dübel, S. (2022). In vitro evolution of myc-tag antibodies: in-depth specificity and affinity analysis of Myc1-9E10 and Hyper-Myc. Biol. Chem. 403, 479-494.
  33. Sebestyén, V., Nagy, E., Mocsár, G., Volkó, J., Szilágyi, O., Kenesei, Á., Panyi, G., Toth, K., Hajdu, P. & Vámosi, G. (2022). Role of C-Terminal Domain and Membrane Potential in the Mobility of Kv1.3 Channels in Immune Synapse Forming T Cells. Int. J. Mol. Sci. 23, 3313.
  34. Tomasova, K., Kroupa, M., Zinkova, A., Korabecna, M., Vymetalkova, V., Skrobanek, P., Sojka, L., Levy, M., Hemminki, K., Liska, V., Hosek, P., Kumar, R., Vodickova, L. & Vodicka, P. (2022). Monitoring of telomere dynamics in peripheral blood leukocytes in relation to colorectal cancer patients' outcomes. Front. Oncol. 12, 962929.
  35. Gaudy-Marqueste, C., Macagno, N., Loundou, A., Ouafik, L., Budden, T., Mundra, P., Gremel, G., Akhras, V., Lin, L., Cook, M., Kumar, R., Grom, J.-J., Nagore, E., Marais, R. & Viros, A. (2022). Molecular characterization of fast growing melanoma. J. Am. Acad. Dermatol. 86, 312-321.

  36. Lee, W.D., Pirona, A.C., Sarvin, B., Stern, A., Nevo-Dinur, K., Besser, E., Sarvin, N., Lagziel, S., Mukha, D., Raz, S., Aizenshtein, E. & Shlomi, T. (2021). Tumor reliance on cytosolic versus mitochondrial one-carbon flux depends on folate availability. CELL Metabol. 33, 190-198.
  37. Rohden, F., Hoheisel, J.D. & Wieden, H.-J. (2021). Through the looking glass: milestones on the road towards mirroring life. Trends Biochem. Sci. 46, 931-943. pdf icon
  38. Hoheisel, J.D. (2021). DNA-Microarray Technologie. Bioanalytik (Kurreck, J., Engels, J. & Lottspeich, E., eds.), Springer Spektrum, Heidelberg, ISBN 978-3-662-61706-9.
  39. Miao, B., Zhang, C., Stroh, N., Brenner, L., Hufnagel, K., Hoheisel, J.D. & Bandapalli, O.R. (2021). Transcription factor TFE3 regulates cell cycle by binding to hTERT promoter. Cancer Comm. 41, 1423-1426. pdf icon
  40. Manoochehri, M., Hielscher, T., Borhani, N., Gerhäuser, C., Fletcher, O., Swerdlow, A.J., Ko, Y.D., Brauch, H., Brüning, T. & Hamann, U. (2021). Epigenetic quantification of circulating immune cells in peripheral blood of triple-negative breast cancer patients. Clin. Epigenetics 13, 207.
  41. Millán-Esteban, D., García-Casado, Z., Manrique-Silva, E., Virós, A., Kumar, R., Furney, S., López-Guerrero, J.A., Requena, C., Bañuls, J., Traves, V. & Nagore, E. (2021). Distribution and clinical role of KIT gene mutations in melanoma according to subtype: a study of 492 Spanish patients. Eur. J. Dermatol. 31, 830-838. pdf icon
  42. Wu, Y., Kröller, L., Miao, B., Boekhoff, H., Bauer, A.S., Büchler, M.W., Hackert, T., Giese, N.A., Taipale, J. & Hoheisel, J.D. (2021). Promoter hypermethylation promotes the binding of transcription factor NFATc1, triggering oncogenic gene activation in pancreatic cancer. Cancers 13, 4569. pdf icon
  43. Lakeman et al. (2021). The predictive ability of the 313 variant-based polygenic risk score for contralateral breast cancer risk prediction in women of European ancestry with a heterozygous BRCA1 or BRCA2 pathogenic variant. Genet. Med. 23, 1726-1737. pdf icon
  44. Rachakonda, S., Hoheisel, J.D. & Kumar, R. (2021). Occurrence, functionality, and abundance of TERT promoter mutations. Int. J. Cancer 149, 1852-1862. pdf icon
  45. Barnes et al. (2021). Breast and prostate cancer risks for male BRCA1 and BRCA2 pathogenic variant carriers using polygenic risk scores. J. Natl. Cancer Inst. 114, 109-122. pdf icon
  46. Al-Shaheri, F.N., Alhamdani, M.S.S., Bauer, A.S., Giese, N., Büchler, M.W., Hackert, T. & Hoheisel, J.D. (2021). Blood biomarkers for differential diagnosis and early detection of pancreatic cancer. Cancer Treat. Rev. 96, 102193. pdf icon
  47. Escala-Garcia et al. (2021). Germline variants and breast cancer survival in patients with distant metastases at primary breast cancer diagnosis. Sci. Rep. 11, 19787.
  48. Morra, A., Escala-Garcia, M., Beesley, J., Keeman, R., Canisius, S., Ahearn, T.U., et al. (2021). Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment. Breast Cancer Res. 23, 86.
  49. Park et al. (2021). Mendelian randomisation study of smoking exposure in relation to breast cancer risk. Br. J. Cancer 125, 1135-1145.
  50. Gaudy-Marqueste, C., Macagno, N., Loundou, A., Ouafik, L., Budden, T., Mundra, P., Gremel, G., Akhras, V., Lin, L., Cook, M., Kumar, R., Grom, J.-J., Nagore, E., Marais, R. & Viros, A. (2021). Molecular characterization of fast growing melanoma. J. Am. Acad. Dermatol., in press. pdf icon
  51. Park et al. (2021). Gene-environment interactions relevant to estrogen and risk of breast cancer: Can gene-environment interactions be detected only among candidate SNPs from genome-wide association studies? Cancers 13, 2370. pdf icon
  52. Smith, S., Nagore, E., Budden, T., Kumar, R., Marais, R., Gaudy-Marqueste, C. & Viros, A. (2021). Molecular landscape of old age melanoma by survival and immunotherapy response. bioRXiv, doi: 10.1101/2021.01.27.428444. pdf icon
  53. Johnson et al. (2021). CYP3A7*1C allele: linking premenopausal oestrone and progesterone levels with risk of hormone receptor-positive breast cancers. Br. J. Cancer 124, 842-854. pdf icon
  54. Kapsner, L.A., Zavgorodnij, M.G., Majorova, S.P., Hotz-Wagenblatt, A., Kolychev, O.V., Lebedev, I.N., Hoheisel, J.D., Hartmann, A., Bauer, A., Mate, S., Prokosch, H.-U., Haller, F. & Moskalev, E.A. (2021). BiasCorrector: fast and accurate correction of all types of experimental biases in quantitative DNA methylation data derived by different technologies. Int. J. Cancer 149, 1150-1165. pdf icon
  55. Stang, A., Weilert, H., Lipp, M.J., Oldhafer, K.J., Hoheisel, J.D., Zhang, C. & Bauer, A.S. (2021). MicroRNAs in blood act as biomarkers of colorectal cancer and indicate potential therapeutic targets. Mol. Oncol. 15, 2480-2490. pdf icon
  56. Baxter et al. (2021). Functional annotation of the 2q35 breast cancer risk locus implicates a structural variant in influencing activity of a long-range enhancer element. Am. J. Hum. Genet. 108, 1190-1203. pdf icon
  57. Millán-Esteban, D., García-Casado, Z., Manrique-Silva, E., Kumar, R. & Nagore, E. (2021). KIT mutational status does not constitute an independent prognostic marker in cutaneous melanoma. A study on 688 Spanish patients. Melanoma Res. 31, 101-103. pdf icon
  58. Coignard et al. (2021). A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers. Nature Commun. 12, 1078. pdf icon
  59. Manrique-Silva, E., Rachakonda, S., Millán-Esteban, D., García-Casado, Z., Requena, C., Traves, V., Kumar, R. & Nagore, E. (2021). Clinical, environmental, and histological distribution of BRAF, NRAS and TERT promoter mutations among cutaneous melanoma patients. A retrospective study of 563 patients. Brit. J. Dermatol. 184, 504-513. pdf icon
  60. Bancalari, B., Ferrer-Guillen, S., Tejera-Vaquerizo, A., Requena, C., García-Casado, Z., Traves, V., Kumar, R. & Nagore, E. (2021). Longitudinal study of prognostic factors for localized cutaneous melanoma in patients who have been disease-free for five years. Eur. J. Dermatol. 31, 192-198. pdf icon
  61. Cheng, J., Zhou, X., Feng, W., Jia, M., Zhang, X., An, T., Luan, M., Pan, Y., Zhang, S., Zhou, Z., Wen, L., Sun, Y. & Zhou, C. (2021). Risk stratification by long non-coding RNAs profiling in COVID-19 patients. J. Cell. Mol. Med. 25, 4753-4764. pdf icon
  62. Millán-Esteban, D., Peña-Chilet, M., García-Casado, Z., Manrique-Silva, E., Requena, C., Bañuls, J., López-Guerrero, J.A., Rodríguez-Hernández, A., Traves, V., Dopazo, J., Virós, A., Kumar, R. & Nagore E. (2021). Mutational characterization of cutaneous melanoma supports divergent pathways model for melanoma development. Cancers 13, 5219. pdf icon
  63. Nagore, E., Virós, A. & Kumar, R. (2021). Positive attributes of anti-TERT CD4 T-helper type 1 immune responses in melanoma. J. Invest. Dermatol. 2, 279-281. pdf icon
  64. Neulinger-Muñoz, M., Schaack, D., Grekova. S.P., Bauer, A.S., Giese, T., Salg, G.A., Espinet, E., Leuchs, B., Heller, A., Nüesch, J.P.F., Schenk, M., Volkmar, M. & Giese, N.A. (2021). Human retrotransposons and the global shutdown of homeostatic innate immunity by oncolytic parvovirus H-1PV in pancreatic cancer. Viruses 13, 1019. pdf icon
  65. Youns, M., Askoura, M., Abbas, H.A., Attia, G.H., Khayyat, A.N., Goda, R.M., Almalki, A.J., Khafagy, E.S. & Hegazy, W.A.H. (2021). Celastrol modulates multiple signaling pathways to inhibit proliferation of pancreatic cancer via DDIT3 and ATF3 up-regulation and RRM2 and MCM4 down-regulation. Onco. Targets Ther. 14, 3849-3860. pdf icon
  66. Kenesei, Á., Volkó, J., Szalóki, N., Mocsár, G., Jambrovics, K., Balajthy, Z., Bodnár, A., Tóth, K., Waldmann, T.A. & Vámosi, G. (2021). IL-15 trans-presentation Is an autonomous, antigen-independent process. J. Immunol. 207, 2489-2500. pdf icon
  67. Morra et al. (2021). Breast cancer risk factors and survival by tumor subtype: pooled analyses from the Breast Cancer Association Consortium Authors. Cancer Epidemiol. Biomarker Prev. 30, 623-642. pdf icon
  68. Dai, H., Rachakonda, S., Penack, P., Blau, I., Blau, O., Radujkovic, A., Müller-Tidow, C., Dreger, P., Kumar, R. & Luft, T. (2021). Polymorphisms in CXCR3 ligands predict early CXCL9 recovery and severe chronic GVHD. Blood Cancer J. 11, 42. pdf icon
  69. Kapoor et al. (2021). Combined associations of a polygenic risk score and classical risk factors with breast cancer risk. J. Natl. Cancer Inst., 113, 329-337. pdf icon
  70. Roth, S., Bose, P., Alhamdani, M.S.S., Tjaden, C., Zamzow, K., Hinz, U., Michalski, C.W., Hoheisel, J.D., Büchler, M.W., Hackert, T. (2021). A non-invasive diagnostic algorithm discriminating low- and high-risk pancreatic intraductal papillary mucinous neoplasms. Annals Surgery 273, e273-e275. pdf icon
  71. Lee, W.D., Pirona, A.C., Sarvin, B., Stern, A., Nevo-Dinur, K., Besser, E., Sarvin, N., Lagziel, S., Mukha, D., Raz, S., Aizenshtein, E. & Shlomi, T. (2021). Tumor reliance on cytosolic versus mitochondrial one-carbon flux depends on folate availability. CELL Metabol. 33, 190-198. pdf icon
  72. Breast Cancer Association Consortium et al. (2021). Breast cancer risk genes: association analysis in more than 113,000 women. N. Engl. J. Med. 384, 428-439. pdf icon

  73. Fu, Y., Cao, R., Schäfer, M., Stephan, S., Braspenning-Wesch, I., Schmitt, L., Bischoff, R., Müller, M., Schäfer, K., Vinzón, S.E., Rösl, F., Hasche, D. (2020). Expression of different L1 isoforms of Mastomys natalensis papillomavirus as mechanism to circumvent adaptive immunity. Elife 9, e57626. pdf icon
  74. Fachal et al. (2020). Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes. Nature Genet. 52, 56-73. pdf icon
  75. Escala-Garcia et al. (2020). A network analysis to identify mediators of germline-driven differences in breast cancer prognosis. Nature Commun.11, 312. pdf icon
  76. Feng et al. (2020). Transcriptome-wide association study of breast cancer risk by estrogen-receptor status. Genet. Epidemiol. 44, 442-468. pdf icon
  77. Manoochehri, M., Jones, M., Tomczyk, K., Fletcher, O., Schoemaker, M.J., Swerdlow, A.J., Borhani, N. & Hamann, U. (2020). DNA methylation of the long intergenic noncoding RNA 299 gene in triple-negative breast cancer: results from a prospective study. Sci. Rep. 10, 11762. pdf icon
  78. Barnes et al. (2020). Polygenic risk scores and breast and epithelial ovarian cancer risks for carriers of BRCA1 and BRCA2 pathogenic variants. Genet. Med. 22, 1653-1666. pdf icon
  79. Landi et al. (2020). Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility. Nature Genet. 52, 494-504. pdf icon
  80. Zhang et al. (2020). Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses. Nature Genet. 52, 572-581. pdf icon
  81. Silvestri et al. (2020). Characterization of the cancer spectrum in men with germline BRCA and BRCA2 pathogenic variants: Results from the consortium of investigators of modifiers of BRCA /2 (CIMBA). JAMA Oncol. 6,1218-1230. pdf icon
  82. Giardiello et al. (2020). Prediction and clinical utility of a contralateral breast cancer risk model. Breast Cancer Res. 21, 144. pdf icon
  83. Liu et al. (2020). Germline HOXB13 mutations p.G84E and p.R217C do not confer an increased breast cancer risk. Sci. Rep. 10, 9688. pdf icon
  84. Patel et al. (2020). Association of genomic domains in BRCA and BRCA2 with prostate cancer risk and aggressiveness. Cancer Res. 80, 624-638. pdf icon
  85. Stark, M.S., Denisova, E., Kays, T.A., Heidenreich, B., Rachakonda, S., Requena, C., Sturm, R.A., Soyer, H.P., Nagore, E. & Kumar, R. (2020). Mutation signatures in melanocytic nevi reveal characteristics of defective DNA repair. J. Invest. Dermatol. 140, 2093-2096. pdf icon
  86. Zhang et al. (2020). Assessment of polygenic architecture and risk prediction based on common variants across fourteen cancers. Nature Comm. 11, 3353. pdf icon
  87. Rashid, M.U., Muhammad, N., Khan, F.A., Shehzad, U., Naeemi, H., Malkani, N. & Hamann, U. (2020). Prevalence of RECQL germline mutations in Pakistani early-onset and familial breast cancer patients. Hered. Cancer Clin. Pract. 18, 25.Feng et al. (2020). Transcriptomewide association study of breast cancer risk by estrogenreceptor status. Genet. Epidemiol. 44, 442-468. pdf icon
  88. Kramer et al. (2020). Breast cancer polygenic risk score and contralateral breast cancer risk. Am. J. Hum. Genet. 107, 837-848. pdf icon
  89. Cardelli, M., Van Doorn, R., Larcher, L., Donato, M.D., Piacenza, F., Pierpaoli, E., Giacconi, R., Malavolta, M., Rachakonda, S., Gruis, N.A., Molven, A., Andresen, P.A., Pjanova, D., van den Oord, J.J., Provinciali, M., Nagore, E. & Kumar, R. (2020). Association of HERV-K and LINE-1 hypomethylation with reduced disease-free survival in melanoma patients. Epigenomics 12, 1689-1706. pdf icon
  90. Mesa, K.G., Bermejo, J.L., Torres, D., Gilbert, M., Plass, C. & Hamann, U. (2020). Genetic variability in the microRNA binding sites of BMPR1B, TGFBR1, IQGAP1, KRAS, SETD8 and RYR3 and risk of breast cancer in Colombian women. OncoTargets Ther. 13, 12281-12287. pdf icon
  91. Caini, S., Gandini, S., Botta, F., Tagliabue, E., Raimondi, S., Nagore, E., Zanna, I., Maisonneuve, P., Newton-Bishop, J., Polsky, D., Lazovich, D., Kumar, R., Kanetsky, P.A., Hoiom, V.A., Ghiorzo, P., Landi, M.T., Ribas, G., Menin, G., Stratigos, A.J., Palmieri, G., Guida, G., García-Borrón, J.C., Nan, H., Little, J., Sera, F., Puig, S., Fargnoli, M.C., on behalf of the M-SKIP study group. (2020). MC1R variants and cutaneous melanoma risk according to histological type, body site, and Breslow thickness: a pooled analysis from the M-SKIP project. Melanoma Res. 30, 500-510. pdf icon
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  129. Visvanathan, A., Patil, V., Abdulla, S., Hoheisel, J.D. & Somasundaram, K. (2019). N6-Methyladenosine landscape of glioma stem-like cells: METTL3 plays a crucial role in post-transcriptional RNA metabolism. Genes 10, 141. pdf icon
  130. Bermejo, J.L., Huang, G., Manoocheri, M., Mesa, K.G., Schick, M., Silos, R.G., Ko, Y.D., Brüning, T., Brauch, H., Lo, W.-Y., Hoheisel, J.D. & Hamann, U. (2018). Long intergenic non-protein coding RNA 299 methylation in peripheral blood is a biomarker for triple-negative breast cancer. Epigenomics 11, 81-93. pdf icon
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  132. Di, C., Syafrizayanti, Y., Zhang, Q., Chen, Y., Liu, Y., Wang, Y., Zhang, X., Liu, Y., Sun, C., Zhang, H. & Hoheisel, J.D. (2018). Function, clinical application, and strategies of pre-mRNA splicing in cancer. Cell Death Differ. 26, 1181-1194. pdf icon
  133. Bure, I., Geer, S., Knopf, J., Roas, M., Henze, S., Ströbel, P., Agaimy, A., Wiemann, S., Hoheisel, J.D., Hartmann, A., Haller, F., Moskalev, E.A. (2018). Long non-coding RNA HOTAIR is upregulated in an aggressive subgroup of gastrointestinal stromal tumors (GIST) and mediates the establishment of gene-specific DNA-methylation patterns. Genes Chrom. Cancer 57, 584-597. pdf icon
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  141. Hufnagel, K., Lueong, S., Willhauck-Fleckenstein, M., Hotz-Wagenblatt, A., Miao, B., Bauer, A., Michel, A., Butt, J., Pawlita, M., Hoheisel, J.D. & Waterboer, T. (2018). Immunoprofiling of Chlamydia trachomatis using whole-proteome microarrays generated by on-chip in situ expression. Sci. Rep. 8, 7503. pdf icon 
  142. Moradi, S.M., Zahedi, S.A., Pajouhi, N., Khosravi, P., Bagheri, S., Ahmadvand, H. & Shahryarhesami, S. (2018). The effects of dietary polyunsaturated fatty acids on miR-126 promoter DNA methylation status and VEGF protein expression in the colorectal cancer cells. Genes Nutr. 13, 32. pdf icon
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  146. Adam, S., Knapp-Mohammady, M., Yi, J. & Bondar, A.-N. (2018). Revised CHARMM force field parameters for iron-containing cofactors of photosystem II. J. Comp. Chem. 39, 7-20. pdf icon

  147. Kaistha, B.P., Krattenmacher, A., Fredebohm, J., Schmidt, H., Behrens, D., Widder, M., Hackert, T., Strobel, O., Hoheisel, J.D., Gress, T.M. & Buchholz, M. (2017). The deubiquitinating enzyme USP5 promotes pancreatic cancer via modulating cell cycle regulators. Oncotarget 8, 66215-66225. pdf icon
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  150. Kunz, P., Flock, T., Soler, N., Zaiss, M., Vincke, C., Sterckx, Y., Kastelic, D., Muyldermans, S. & Hoheisel, J.D. (2017). Exploiting sequence and stability information for directing nanobody stability engineering. BBA-Gen. Subjects 1861, 2196-2205. pdf icon
  151. Chakraborty, C., Fadda, A., Erben, E., Lueong, S., Hoheisel, J.D., Mugo, E. & Clayton, C. (2017). Interactions of CAF1-NOT complex components from Trypanosoma brucei. F1000Research 6, 858. pdf icon
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  155. Jandaghi, P., Najafabadi, H.S., Bauer, A.S., Papadakis, A.I., Fassan, M., Hall, A., Monast, A., von Knebel Doeberitz, M., Neoptolemos, J.P., Costello, E., Greenhalf, W., Scarpa, A., Sipos, B., Auld, D., Lathrop, M., Park, M., Büchler, M.W., Strobel, O., Hackert, T., Giese, N.A., Zogopoulos, G., Sangwan, V., Huang, S., Riazalhosseini, Y. & Hoheisel, J.D. (2016). Dopamine receptor D2 is critical for pancreatic ductal adenocarcinoma and promises pharmacological therapy by already established antagonists. Gastroenterology 151, 1218-1231. pdf icon
  156. Dror, S., Sander, L., Schwartz, H., Sheinboim, D., Barzilai, A., Dishon, Y., Apcher, S., Golan, T., Greenberger, S., Barshack, I., Malcov, H., Zilberberg, A., Levin, L., Nessling, M., Friedmann, Y., Igras, V., Barzilay, O., Vaknine, H., Brener, R., Zinger, A., Schroeder, A., Gonen, P., Khaled, M., Erez, N., Hoheisel, J.D. & Levy, C. (2016). Melanoma miRNA trafficking triggers the tumor primary niche formation. Nature Cell Biol. 18, 1006-1017. pdf icon
  157. Pan, Y., Shen, N, Jung-Klawitter, S., Betzen, C., Hoffmann, G.F., Hoheisel, J.D. & Blau, N. (2016). CRISPR RNA-guided FokI nucleases repair a PAH variant in a phenylketonuria model. Sci. Rep. 6, 35794. pdf icon
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  160. Kamhieh-Milz J.,, Mustafa, S.A., Sterzer, V., Khorramshahi, O., Celik, H., Keski, S., Movassaghi, K., Hoheisel, J.D., Alhamdani, M.S.S. & Salama, A. (2016). Identification of 68 dynamic factors in the supernatant of platelet concentrates. J. Proteomics 150, 74-85. pdf icon
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  162. Kibat, J., Schirrmann, T., Knape, M.J., Helmsing, S., Meier, D., Hust, M., Schröder, C., Bertinetti, D., Winter, G., Pardes, K., Funk, M., Vala, A., Giese, N., Herberg, F.W., Dübel, S. & Hoheisel, J.D. (2016). Utilisation of antibody microarrays for the selection of specific and informative antibodies from recombinant library binders of unknown quality. New Biotechnol. 33, 574-581. pdf icon
  163. Weidmann, J., Dimitrijević, E., Hoheisel, J.D. & Dawson, P.E. (2016). A Boc SPPS-compatible linker for the synthesis of peptide o-aminoanilides. Org. Lett. 18, 164-167. pdf icon
  164. Cheng, X., Kim, J.Y., Gafroory, S., Duvaci, T., Rafiee, R., Theobald, J., Alborzinia, H., Holenya, P., Fredebohm, J., Merz, K.-H., Mehrabi, A., Hafezi, M., Saffari, A., Eisenbrand, G., Hoheisel, J.D. & Wölfl, S. (2016). Methylisoindigo preferentially kills cancer stem cells by interfering cell metabolism via inhibition of LKB1 and activation of AMPK in PDACs. Mol. Oncol.10, 806-824. pdf icon
  165. Bal, G., Futschik, M.E., Hartl, D., Ringel, F., Kamhieh-Milz, J., Sterzer, V., Hoheisel, J.D., Alhamdani, M.S.S. & Salama, A. (2016). Identification of novel biomarkers in chronic autoimmune thrombocytopenia (ITP) by microarray-based serum protein profiling. Br. J. Haematology 4, 602-615. pdf icon
  166. Lueong, S., Merce, C., Fischer, B., Hoheisel, J.D. & Erben, E.D. (2016). Gene expression regulatory networks in Trypanosoma brucei; the role of the mRNA-binding proteome. Mol. Microbiol. 100, 457-471. pdf icon
  167. Betzen, C., Plotniki, K., Fathalizadeh, F., Pappan, K., Fleming, T., Bielaszewska, M., Karch, H., Tönshoff, B. & Rafat, N. (2016). Shiga toxin-2a-induced endothelial injury in hemolytic uremic syndrome: a metabolomic analysis. J. Infect. Dis., 213, 1031-1040. pdf icon
  168. Helwa, R., Ramadan, M., Abdel-Wahab, A.-H.A., Knappskog, S. & Bauer, A.S. (2016). Promoter SNPs rs116896264 and rs73933062 form a distinct haplotype and are associated with galectin-4 overexpression in colorectal cancer. Mutagenesis 31, 401-408. pdf icon

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  170. Olea Jr., C., Weidmann, J., Dawson, P.E. & Joyce, G.F. (2015). An L-RNA aptamer that binds and inhibits RNase. Chem. Biol. 22, 1437-1441. pdf icon
  171. Nijaguna, M.B., Schröder, C., Patila, V., Hegdec, A.S., Chandramoulid, B.A., Arivazhagand, A., Santoshe, V., Hoheisel, J.D. & Somasundaram, K. (2015). Definition of a serum marker panel for glioblastoma discrimination and identification of Interleukin 1β in the microglial secretome as a novel mediator of endothelial cell survival induced by C-Reactive Protein. J. Proteomics 128, 251-261. pdf icon
  172. Mock, A., Warta, R., Geisenberger, C., Bischoff, R., Schulte, A., Lamszus, K., Stadler, V., Felgenhauer, T., Schichor, C., Schwartz, C., Matschke, J., Jungk, C., Ahmadi, R., Sahm, F., Capper, D., Glass, R., Tonn, J.-C., Westphal, M., von Deimling, A., Unterberg, A., Bermejo, J.L. & Herold-Mende, C. (2015). Printed peptide arrays identify prognostic TNC serumantibodies in glioblastoma patients. Oncotarget 6, 13579-13590. pdf icon
  173. Heller, A., Gaida, M.M., Giese, T., Scarpa, A., Keleg, S., Neoptolemos, J.P., Hackert, T., Strobel, O., Hoheisel, J.D., Giese, N.A. & Bauer, A.S. (2015). Stratification of pancreatic tissue samples for molecular studies: RNA-based cellular annotation procedure. Pancreatology 15, 423-431. pdf icon
  174. Stoy, C., Sundaram, A., Garcia, M.R., Wang, X. Seibert, O., Zota, A., Wendler, S., Männle, D., Hinz, U., Sticht, C., Muciek, M., Gretz, N., Rose, A., Greiner, V., Hofmann, T., Bauer, A., Hoheisel, J.D., Berriel Diaz, M., Gaida, M.M., Werner, J., Schafmeier, T., Strobel, O. & Herzig, S. (2015). Transcriptional co-factor transducin beta-like (TBL) 1 acts as a checkpoint in pancreatic cancer malignancy. EMBO Mol. Med. 7, 1048-1062. pdf icon
  175. Betzen, B., Alhamdani, M.S.S., Lueong, S., Schröder, C., Stang, A. & Hoheisel, J.D. (2015). Clinical proteomics; promises, challenges and limitations of affinity arrays. Proteomics Clin. Appl. 9, 342-347. pdf icon
  176. Bradbury, A., Plückthun, A., Anderson, S., Arap, W., Baralle, F.E., Beck, A., Begley, G., Benet, L., Benhar, I., Blackshaw, S., Blow, N., Boeke, J., Borrebaeck, C., Burrone, O.E., Burton, D., Campbell, E., Carter, P., Cattaneo, A., Cesareni, G., Chakraborti, S., Chalmers, A.D., Chaput, J., Chasteen, L., Chester, K.A., Christ, D., Clark, M., Close, D., D'Angelo, S., Dimitrov, D., Dübel, S., Edwards, A., Ellington, A., Feldhaus, M., Ferrara, F., Freeman, N.L., Fuh, G., Gaiotto, T., Gatlin, C.L., Georgiou, G., Glanville, J., Gold, L., Gräslund, S., Griffiths, A.D., Haab, B., Hoheisel, J.D., Hornsby, M., Hudson, P., Hust, M., Huston, J.S., Kay, B., Kim, K.M., Kiss, C., Koide, S., Kossiakoff, A., LaBaer, J., Landegren, U., Lane, D., Larrick, J., Lee, S., Lefranc, M.-P., Liu, B., Lou, J., Lund-Johansen, F., Macor, P., Magee, M., Marasco, W., Marks, J., Mathias, S., McCafferty, J., Montelione, G., Neri, D., Nishimura, S.L., Not, T., Oprea, T., Pai, J.K., Parren, P., Pasqualini, R., Pavlik, P., Qiu, J., Quarmby, V., Reichert, J., Rimm, D., Santoro, C., Sblattero, D., Schirrmann, T., Scott, J., Sechi, S., Sidhu, S., Siegel, R., Sitia, R., Skerra, A., Soh, H., Song, B.D., Song, P., Staquicini, F.I., Stoevesandt, O., Taussig, M., Tawfik, D.F., Trimmer, J., Uhlen, M., Velappan, N., Waldman, H., Waldo, G.S., Ward, S., Weiner, M., Wells, J., Wittrup, D., Wu, A., Wu, H., Yoo, J.-S., Zhou, Y. (2015). Standardize antibodies used in research. Nature 518, 27-29. pdf icon
  177. Moskalev, E.A., Jandaghi, P., Fallah, M., Manoocheri, M., Botla, S.K., Kolychev O.V., Nikitin, E.A., Bubnov, V.V., von Knebel Doeberitz, M., Strobel, O., Hackert, T., Büchler, M.W., Giese, N., Bauer, A., Muley, T., Warth, A., Schirmacher, P., Haller, F., Hoheisel, J.D. & Riazalhosseini, Y. (2015). GHSR DNA hypermethylation is a common epigenetic alteration of high diagnostic value in a broad spectrum of cancers. Oncotarget 6, 4418-4427. pdf icon
  178. Jandaghi, P., Hoheisel, J.D. & Riazalhosseini, Y. (2015). GHSR hypermethylation: a promising pan-cancer marker. Cell Cycle 14, 689-690. pdf icon
  179. Haller, F., Zhang, J.D., Moskalev, E.A., Braun, A., Otto, C., Geddert, H., Riazalhosseini, Y., Ward, A., Balwierz, A., Schäfer, I.-M., Cameron, S., Ghadimi, M., Agaimy, A., Fletcher, J.A., Hoheisel, J.D., Hartmann, A., Werner, M., Wiemann, S. & Sahin, Ö. (2014). Combined DNA methylation and gene expression profiling in gastrointestinal stromal tumors (GISTs) reveals hypomethylation of SPP1 as an independent prognostic factor. Int. J. Cancer 136, 1013-1023. pdf icon
  180. Simo, G, Lueong, S., Grebaut, P., Guny, G. & Hoheisel, J.D. (2015). Micro RNA expression profiles in peripheral blood cells of rats that were experimentally infected with Trypanosoma congolense and different Trypanosoma brucei subspecies. Microb. Infect. 17, 596-608. pdf icon
  181. Paizs, B. (2015). A divide-and-conquer approach to compute collision cross sections in the projection approximation method. Int. J. Mass. Spectrom. 378, 360-363. pdf icon
  182. Hernandez, O., Paizs, B., & Maître, P. (2015). Rearrangement chemistry of an ions probed by IR spectroscopy. Int. J. Mass. Spectrom. 377, 172-178. pdf icon
  183. Roth, P., Keller, A., Hoheisel, J.D., Codo, P., Bauer, A.S., Backes, C., Leidinger, P., Meese, E., Thiel, E., Korfel, A & Weller, M. (2014). Differentially regulated miRNAs as prognostic biomarkers in the blood of PCNSL patients. Eur. J. Cancer 51, 382-390. pdf icon

  184. Keller, A., Leidinger, B., Vogel, B., Backes, C., ElSharawy, A., Galata, V., Müller,S., Marquart, S., Schrauder, M.G., Strick, R., Bauer, A., Wischhusen, J., Beier, M., Kohlhaas, J., Katus, H.A., Hoheisel, J.D., Franke, A., Meder, B. & Meese, E. (2014). miRNAs can be generally associated with human pathologies as exemplified for miR-144*. BMC Med. 12, 224. pdf icon
  185. Ricoult, S.G., Nezhad, A.S., Knapp-Mohammady, M., Kennedy, T.E. & Juncker, D. (2014). Humidified microcontact printing of proteins: universal patterning of proteins on both low and high energy surfaces. Langmuir 30, 12002–12010. pdf icon
  186. Hoheisel, J.D. (2014). Die Nutzung von Protein-Microarrays zur Personalisierten Proteomanalyse. labor&more 10/14, 10-13. pdf icon
  187. Wolf, J., Müller-Decker, K., Flechtenmacher, C., Zhang, F., Shahmoradgoli, M., Mills, G.B., Hoheisel, J.D. & Böttcher, M. (2014). SALL1 acts as tumor suppressor and regulator of CDH1. Oncogene 33, 4273-4278. pdf icon
  188. Keleg, S., Titov, A., Heller, A., Giese, T., Tjaden, C., Ahmad, S.S., Gaida, M.M., Bauer, A.S., Werner, J. & Giese, N.A. (2014). Chondroitin sulfate proteoglycan CSPG4 as a novel hypoxia-sensitive marker in pancreatic tumors. PLOS ONE 9, e100178. pdf icon
  189. Liesz, A., Bauer, A., Hoheisel, J.D. & Veltkamp, R. (2014). Intracerebral Interleukin-10 injection modulates post-ischemic neuroinflammation: an experimental microarray study. Neuroscience Lett. 579, 18-23. pdf icon
  190. Nesterov-Mueller, A., Maerkle, F., Hahn, L., Foertsch, T., Schillo, S., Bykovskaya, V., Sedlmayr, M., Weber, L.K., Ridder, B., Soehindrijo, M., Muenster, B., Striffler, J., Bischoff, F.R., Breitling, F. & Loeffler, F.F. (2014). Particle-based microarrays of oligonucleotides and oligopeptides. Microarrays 3, 245-262. pdf icon
  191. Erben, E., Lueong, S. Fadda, A., Hoheisel, J.D. & Clayton, C. (2014). A genome-wide tethering screen reveals novel potential post-transcriptional regulators in Trypanosoma brucei. PLOS Pathogens 10, e1004178. pdf icon
  192. Srinivasan, H., Allory, Y., Sill, M., Vordos, D., Alhamdani, M.S.S., Radvanyi, F., Hoheisel, J.D. & Schröder, D. (2014). Prediction of recurrence of non muscle-invasive bladder cancer by means of a protein signature identified by antibody microarray analyses. Proteomics 14, 1333-1342. pdf icon
  193. Syafrizayanti, Betzen, C., Hoheisel, J.D. & Kastelic, D. (2014). Methods for analysing and quantifying protein-protein interactions. Exp. Rev. Prot. 11, 107-120.
  194. Muda, K., Bertinetti, D., Gesellchen, F., Hermann, J.S., von Zweydorf, F., Geerlof, A., Jacob, A., Ueffing, M., Gloeckner, C.J. & Herberg, F.W. (2014). The Parkinson related LRRK2 mutation R1441C/G/H impairs PKA phosphorylation of LRRK2 and disrupts its interaction with 14-3-3. Proc. Natl. Acad. Sci. USA 111, E34-E43. pdf icon 
  195. Böttcher, M., Lawson, A., Ladenburger, V., Fredebohm, J., Wolf, J., Hoheisel, J.D., Frezza, C. & Shlomi, T. (2014). High throughput synthetic lethality screen reveals a tumorigenic role of adenylate cyclase in fumarate hydratase-deficient cancer cells. BMC Genomics 15, 158. pdf icon
  196. Dutruel, C., Bergmann, F., Rooman, I., Zucknick, M., Weichenhan, D., Rachakonda, P.S., Bauer, A., Giese, N., Hong, C., Xie, H., Costello, J., Hoheisel, J.D., Kumar, R., Rehli, M., Schirmacher, P., Werner, J., Plass, C., Popanda, O. & Schmezer, P. (2014). Early epigenetic downregulation of WNK2 kinase during pancreatic ductal adenocarcinoma development. Oncogene 33, 3401-3410. pdf icon
  197. Hernandez, O., Pulay, P., Maître, P. & Paizs, B. (2014). Zundel-type H-bonding in biomolecular ions. J. Am. Soc. Mass Spectrom. 25, 1511-1514.
  198. Ragusa, M., Maugeri, M., Statello, L., Barbagallo, C., Passanisi, R., Alhamdani, M.S.S., Li Destri, G., Cappellani, A., Barbagallo, D., Scalia, M., Valadi, H., Hoheisel, J.D., Di Pietro, C. & Purrello, M. (2014). Variations in the miRNA and protein content between colorectal cancer cells and their exosomes following Cetuximab treatment; biomolecular and translational implications. Oncoscience 1, 132-157. pdf icon
  199. Märkle, F., Löffler, F.F., Schillo, S.,, Förtsch, T., Münster, B., Striffler, J., Schirwitz, C., Bischoff, F.R., Breitling, F. & Nesterov-Müller, A. (2014). High-density peptide arrays with combinatorial laser fusing. Adv. Mater. 26, 3730-3734.
  200. Milne R., La Vecchia, C., Van Steen, K., Hahn, S., Buchholz, M., Costello, E., Esposito, I., Hoheisel, J.D., Lange, B., Lopez-Bigas, N., Michalski, C.W., Real, F.X, Brand, A. & Malats, N. (2014). EU Pancreas - an integrated European platform for pancreas cancer research: from basic science to clinical and public health interventions for a rare disease. Public Health Genomics 16, 305-312. pdf icon

  201. Wolf, J., Dewi, D., Fredebohm, J., Müller-Decker, K., Flechtenmacher, C., Hoheisel, J.D., Böttcher, M. (2013). A mammosphere formation RNAi screen reveals that ATG4A promotes a breast cancer stem-like phenotype. Breast Cancer Res. 15, R109. pdf icon
  202. Lueong, S.S., Hoheisel, J.D. & Alhamdani, M.S.S. (2013). Protein microarrays as tools for functional proteomics: achievements, promises and challenges. J. Prot. Bioinf. 07, 004. pdf icon
  203. Marzoq, A.J., Giese, N., Hoheisel, J.D. & Alhamdani, M.S.S. (2013). Proteome variations in pancreatic stellate cells upon stimulation with pro-inflammatory factors. J. Biol. Chem. 288, 32517-32527. pdf icon
  204. Schröder, C., Srinivasan, H., Sill, M., Linseisen, J., Fellenberg, K., Becker, N., Nieters, A. & Hoheisel, J.D. (2013). Plasma protein analysis of patients with different B-cell lymphomas with high-content antibody microarrays. Proteomics Clin. Appl. 7, 802-812. pdf icon
  205. Fredebohm, J., Wolf, J., Hoheisel, J.D. & Böttcher, M. (2013). Depletion of RAD17 sensitizes pancreatic cancer cells to gemcitabine. J. Cell Sci. 126, 3380-3389. pdf icon
  206. Rodenburg, W., Kutschmann, S., Pennings, J., Kifle, S. & Schröder, C. (2013). Antikörper-Mikroarrays: Vergleich von Blutproteinen immundefizienter und -kompetenter Mäuse. BIOspektrum 19, 748-751. pdf icon
  207. Wolf, R.J., Hilger, R.A., Werner, J., Hoheisel, J.D. & Holtrup, F. (2013). In vivo activity and pharmacokinetics on nemorosone on pancreatic cancer xenografts. PLoS ONE 8, e74555. pdf icon
  208. Lueong, S., Simo, G., Jamonneau, V., Bucheton, B., Hoheisel, J.D. & Clayton, C. (2013). The miRNA and mRNA signatures of peripheral blood cells in humans infected with Trypanosoma brucei gambiense. PLoS ONE 8, e67312. pdf icon
  209. Rachakonda, P.S., Bauer, A.S., Xie, H., Campa, D., Rizzato, C., Canzian, F., Beghelli, S., Greenhalf, W., Costello, E., Schanne, M. Heller, A., Scarpa, A., Neoptolemos, J.P., Werner, J., Büchler, M., Hoheisel, J.D., Hemminki, K., Giese, N. & Kumar, R. (2013). Somatic mutations in exocrine pancreatic tumors: association with patient survival. PLoS ONE 8, e60870. pdf icon
  210. Rizzato, C., Campa, D., Pezzilli, R., Soucek, P., Greenhalf, W., Capurso, G., Talar-Wojnarowska, R., Heller, A., Jamroziak, K., Khaw, K.-T., Key, T.J., Bambi, F., Landi, S., Vodickova, L., Büchler, M.W., Bugert, P., Vodicka, P., Neoptolemos, J.P., Werner, J., Hoheisel, J.D., Bauer, A.S., Giese, N. & Canzian, F. (2013). ABO blood groups and pancreatic cancer risk and survival: results from the PANcreatic Disease ReseArch (PANDoRA) consortium. Oncol. Reports 29, 1637-1644. pdf icon
  211. Shahmoradgoli, M., Riazalhosseini, Y., Haag, D., Becker, N., Hovestadt, V., Heck, S., Sinn, H.P., Schneeweiss, A., Mannherz, O., Sahin, Ö. & Lichter, P. (2013). Protein phosphatase 1, regulatory subunit 15B is a survival factor for ER alpha-positive breast cancer. Int. J. Cancer 132, 2714-2719. pdf icon
  212. Patenge, N., Pappesch, R., Krawack, F., Walda, C., Abu Mraheil, M., Jacob, A., Hain, T., & Kreikemeyer, B. (2013). Inhibition of growth and gene expression by PNA-peptide conjugates in Streptococcus pyogenes. Mol. Ther. Nucleic Acids 2, e132. pdf icon
  213. Campa, D., Rizzato, C., Bauer, A.S., Werner, J., Capurso, G., Costello, E., Talar-Wojnarowska, R., Jamroziak, K., Pezzilli, R., Gazouli, M., Khaw, K.-T., Key, T.J., Bambi, F., Heller, A., Landi, L., Vodickova, L., Theodoropoulos, G., Bugert, P., Vodicka, P., Hoheisel, J.D., Neoptolemos, J.P., Soucek, P., Büchler, M.W., Giese, N. & Canzian, F. (2013). Lack of replication of seven pancreatic cancer susceptibility loci identified in two Asian populations. Cancer Epidemiol. Biomarkers Prev. 22, 320-323. pdf icon
  214. Youns, M. & Fathy, G.M. (2013). Upregulation of extrinsic apoptotic pathway in curcumin-mediated antiproliferative effect on human pancreatic carcinogenesis. J. Cell. Biochem. 114, 2654-2665. pdf icon
  215. Löffler, F.F., Cheng, Y.-C., Muenster, B., Striffler, J., Liu, F.C., Bischoff, F.R., Doersam, E., Breitling, F. & Nesterov-Mueller, A. (2013). Printing peptide arrays with a complementary metal oxide semiconductor chip. Fundamentals and Applications of New Bioproduction Systems (Ed. Zeng, A.-P.), Advances in Biochemical Engineering/Biotechnology, Springer, 1-23.
  216. Hoheisel, J.D., Alhamdani, M.S.S. & Schröder, C. (2013). Affinity-based microarrays for proteomic analysis of cancer tissues. Proteomics Clin. Appl. 7, 8-16. pdf icon
  217. Haas, J., Frese, K.S., Park, Y.J., Keller, A., Vogel, B., Franke, J., Fischer, S., Weichenhan, D., Ehlermann, P., Bauer, A., Hassel, S., Nietsch, R., Dösch, A., Schultz, J.-H., Mereles, D., Hardt, S., Backs, J., Hoheisel, J.D., Plass, C., Katus, H.A., Meder, B. (2013). Alterations in cardiac DNA methylation suggest a role of epigenetic mechanisms in human dilated cardiomyopathy. EMBO Mol. Med. 5, 413-429. pdf icon
  218. Kim, E.-G., Seimiya, I., Chung, J., Hoheisel, J.D., Lim, I.K., Fujiki, H. & Park, S.C. (2013). The eleventh Korea-Japan-Germany joint symposium on cancer and ageing research. J. Cancer Res. Clin. Oncol. 139, 901-904. pdf icon
  219. Otero, E.P.U., Eliel, G.S.N., Fonseca, E. J. S., Hickman, J. M., Rodarte, R., Barretoc, E. & Jalkanen, K.J. (2013). Study of cancer cell lines with Fourier transform infrared (FTIR)/vibrational absorption (VA) spectroscopy. Curr. Phys. Chem. 3, 36-43. (doi: 10.2174/1877946811303010007)
  220. Durand, S., Rossa, M., Hernandez, O., Paizs, B. & Maitre, P. (2013). IR spectroscopy of b(4) fragment ions of protonated pentapeptides in the X-H (X = C, N, O) Region. J. Phys. Chem. 117, 2508-2516.
  221. Schirwitz, C., Löffler, F., Felgenhauer, T., Stadler, V., Nesterov-Mueller, A., Dahint, R., Breitling, F. & Bischoff, F.R. (2013). Purification of high-complexity peptide microarrays by spatially resolved array transfer to gold-coated membranes. Adv. Materials 25, 1598-1602. (doi: 10.1002/adma.201203853)

  222. Fredebohm, J., Böttcher, M., Eisen, C., Gaida, M.M., Heller, A., Keleg, S., Tost, J., Greulich-Bode, K., Hotz-Wagenblatt, A., Lathrop, M., Giese, N.A. & Hoheisel, J.D. (2012). Establishment and characterization of a highly tumourigenic and cancer stem cell enriched pancreatic cancer cell line as a well defined model system. PLoS ONE 7, e48503. pdf icon
  223. Botla, S.K., Moghaddas Gholami, A., Malekpour, M., Moskalev, E.A., Fallah, M., Aghajani, A., Bondar, I.S., Omranipour, R., Malekpour, F., Mohajeri, A, Jahangiri Babadi, A., Bubnov, V.V., Najmabadi, H., Hoheisel, J.D. & Riazalhosseini, Y. (2012). Diagnostic values of GHSR DNA methylation pattern in breast cancer. Breast Canc. Res. Treat. 135, 705-713. pdf icon
  224. Alhamdani, M.S.S., Youns, M., Buchholz, M., Gress, T.M., Beckers, M.C., Maréchal, D., Bauer, A.S., Schröder; C. & Hoheisel, J.D. (2012). Immunoassay-based proteome profiling of 24 pancreatic cancer cell lines. J. Proteomics 75, 3747-3759. pdf icon
  225. Moskalev, E.A., Luckert, K., Vorobjev, I.A., Mastitsky, S.E., Gladkikh, A.A., Stephan, A., Schrenk, M. Pötz, O., Joos, T.O. & Hoheisel, J.D. (2012). Concurrent epigenetic silencing of Wnt/β-catenin pathway inhibitor genes in B-cell chronic lymphocytic leukemia. BMC Cancer 12, 213. pdf icon
  226. Bauer, A., Keller, A., Costello-Goldring, E., Greenhalf, W., Bier, M., Borries, A., Beier, M., Neoptolemos, J.P., Büchler, M., Werner, J., Giese, N. & Hoheisel, J.D. (2012). Diagnosis of pancreatic cancer and chronic pancreatitis by measurement of microRNA abundance in blood and tissue. PLoS ONE 7, e34151. pdf icon
  227. Hoheisel, J.D. (2012). Antikörper zur Funktions-Analyse des Proteoms. Laborwelt 3, 16-17. pdf icon
  228. Hoheisel, J.D. (2012). Funktionelle Genom- und Proteomforschung in der Krebsforschung. Bioelektronische Diagnose- und Therapiesysteme; m3: microelectronics meets medicine (Wolf, B., eds.), Shaker Verlag, Aachen, 57-60.
  229. Hoheisel, J.D. (2012). DNA-Microarray Technologie. Bioanalytik (Lottspeich, E. & Engels, J.W., eds.), Elsevier, Heidelberg, 1047-1058.
  230. Shenfeld, M., Hachmo, Y., Frenkel, M., Dafni, N., Böttcher, M., Hoheisel, J.D., Dotan, I. & Canaani, D. (2012). ER-alpha-cDNA as part of a bicistronic transcript gives rise to high frequency, long term, receptor expressing cell clones. PLoS ONE 7, e31977. pdf icon
  231. Moskalev, E.A., Schubert, M. & Hoheisel, J.D. (2012). RNA-directed epigenomic reprogramming – an emerging principle of a more targeted cancer therapy? Genes Chrom. Cancer 51, 105-110. pdf icon
  232. Zang, H., Pelech, S., Ruijtenbeek, R., Felgenhauer, T., Bischoff, R., Breitling, F. & Stadler, V. (2012). Peptide Arrays. Microarrays in Diagnostics and Biomarker Development: Current and Future Applications (Ed. Jordan, B.), Springer, 81-112.
  233. Wagner, J., Löffler, F., Foertsch, T., Schirwitz, C., Fernandez, S., Hinkers, H., Arlinghaus, H.F., Painke, F., Koenig, K., Bischoff, F.R., Nesterov-Mueller, A., Breitling, F., Hausmann, M. & Lindenstruth, V. (2012). Image processing quality analysis for particle based peptide array production on a microchip. In Tech 2012. pdf icon
  234. Schirwitz, C., Löffler, F., Felgenhauer, T., Stadler, V., Breitling, F. & Bischoff, F.R. (2012). Sensing immune responses with customized peptide microarrays. Biointerphases 7, 47. pdf icon
  235. Löffler, F., Schirwitz, C., Wagner, J., König, K., Märkle, F., Torralba, G., Hausmann, M., Bischoff, F.R., Nesterov-Müller, A. & Breitling, F. (2012). Biomolecule arrays using functional combinatorial particle patterning on microchips. Advanced Funct. Mat. 22, 2503-2508.
  236. Bubnov, V., Moskalev, E., Petrovskiy, Y., Bauer, A., Hoheisel, J.D. & Zaporozhan, V. (2012). Hypermethylation of TUSC5 genes in breast cancer tissue. Exp. Oncol. 34, 370-372. pdf icon
  237. Wurst, M., Seliger, B., Jha, B.A., Klein, C., Queiroz, R. & Clayton, C. (2012). Expression of the RNA recognition motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei. Mol. Microbiol. 83, 1048-1063. pdf icon
  238. Ritari, J., Hultman, J., Fingerroos, R., Tarkkanen, J., Pullat, J., Paulin, L., Kivi, N., Auvinen, P. & Auvinen, E. (2012). Detection of human papillomaviruses by polymerase chain reaction and ligation reaction on universal microarray. PLoS ONE 7, e34211. pdf icon
  239. Simpkins, N.S., Holtrup, F., Rodeschini, V., Taylor, J.D. & Wolf, R. (2012). Comparison of the cytotoxic effects of enantiopure PPAPs, including nemorosone and clusianone. Bioorg Medicinal Chem. Lett. 22, 6144-6147.
  240. Somogyi, A., Harrison, A.G. & Paizs, B. (2012). Using gas-phase guest-host chemistry to probe the structures of b ions of peptides. J. Am. Soc. Mass Spectrom. 23, 2055-2058.
  241. Wassermann, T.N., Boyarkin, O.V., Paizs, B. & Rizzo, T.R. (2012). Conformation-specific spectroscopy of peptide fragment ions in a low-temperature ion trap. J. Am. Soc. Mass Spectrom.  23, 1029-1045. pdf icon
  242. Bythell, Benjamin J., Hernandez, O., Steinmetz, V., Paizs, B. & Maitre, P. (2012). Tyrosine side-chain catalyzed proton transfer in the YG a(2) ion revealed by theory and IR spectroscopy in the 'fingerprint' and X-H (X = C, N, O) stretching regions. Int. J. Mass Spectrom. 316, 227-234.
  243. Bernier, M.C., Paizs, B. & Wysocki, V.H. (2012). Influence of a gamma amino acid on the structures and reactivity of peptide a(3) ions. Int. J. Mass Spectr. 316, 259-267.
  244. Paizs, B. & Mann, M. (2012). 23rd Sanibel Conference on Mass Spectrometry: From fragmentation mechanisms to sequencing: tandem mass spectrometry based peptide and protein identification. J. Am. Soc. Mass Spectrom. 23, 575-576. pdf icon
  245. Paizs, B., Bythell, B.J. & Maitre, P. (2012). Rearrangement Pathways of the a(4) Ion of Protonated YGGFL Characterized by IR Spectroscopy and Modeling. J. Am. Soc. Mass Spectrom. 23, 664-675. pdf icon
  246. Moss, C.L., Chamot-Rooke, J., Nicol, E., Brown, J., Campuzano, I., Richardson, K., Williams, J.P., Bush, M.F., Bythell, B., Paizs, B. & Turecek, F. (2012). Assigning structures to gas-phase peptide cations and cation-radicals. An infrared multiphoton dissociation, ion mobility, electron transfer, and computational study of a histidine peptide ion. J. Phys. Chem. B 116, 3445-3456.
  247. Jalkanen, K.J., Olsen, K., Knapp-Mohammady, M. & Bohr, J. (2012). First principle structure for the close-packed and the 7/2 motifs of collagen. Europhysics Lett. 100, 28003, 1-4. pdf icon
  248. Otero, E.P.U., Eliel, G.S.N., Fonseca, E. J. S., Hickman, J. M., Rodarte, R., Barretoc, E. & Jalkanen, K.J. (2013). Study of cancer cell lines with Fourier transform infrared (FTIR)/vibrational absorption (VA) spectroscopy. Curr. Phys. Chem. 3, 36-43.
  249. Knapp-Mohammady, M. & March, N.H. (2012). Can liquid supercooling and glassy-like structure be invoked to interpret collective cell behaviour in the human body? Phys. Chem. Liq. 50, 137-151.
  250. March, N.H. & Knapp-Mohammady, M. (2012). The inhomogeneous electron liquid in the ligand estradiol compared and contrasted with that in estrone. Phys. Chem. Liq. 50, 271-277.

  251. Keller, A., Leidinger, P., Bauer, A., ElSharawi, A., Haas, J., Backes, C., Wendschlag, A., Giese, N., Tjaden, C., Ott, K., Werner, J., Hackert, T., Ruprecht, K., Huwer, H., Huebers, J., Jacobs, G., Rosenstiel, P., Dommisch, H., Schäfer, A., Müller-Quernheim, J., Wullich, B., Keck, B., Graf, N., Reichrath, J., Vogel, B., Nebel, A., Jager, S.U., Staehler, P., Amarantos, I., Boisguerin, V., Staehler, C., Beier, M., Scheffler, M., Büchler, M.W., Wischhusen, J., Häusler, S.F.M., Dietl, J., Hofmann, S., Lenhof, H.P., Schreiber, S., Katus, H.A., Rottbauer, W., Meder, B., Hoheisel, J.D., Franke, A. & Meese, E. (2011). Towards discovering the blood-born miRNome of human diseases. Nature Meth. 8, 841-843. pdf icon
  252. Friedrich, A., Hoheisel, J.D., Knemeyer, J.-P. & Marmé, N. (2011). A universally applicable process for preparing stoichiometrically 1:1 labelled functional proteins. Proteomics 11, 3757-3760. pdf icon
  253. Rizzato, C., Campa, D., Giese, N.,Werner, J., Rachakonda, S.P., Kumar, R., Schanné, M., Greenhalf, W., Costello, E., Khaw, K.T., Key, T.J., Siddiq, A., Lorenzo-Bermejo, J., Burwinkel, B., Neoptolemos, J.P., Büchler, M.W., Hoheisel, J.D., Bauer, A. & Canzian, F. (2011). Pancreatic cancer susceptibility loci and their role in survival. PLoS ONE 6, e27921. pdf icon
  254. Dorer, D.E., Holtrup, F., Fellenberg, K., Engelhardt, E., Hoheisel, J.D. & Nettelbeck, D.M. (2011). Replication and virus-induced transcriptome of HAdV-5 in normal host cells versus cancer cells – differences of relevance for adenoviral oncolysis. PLoS ONE 6, e27934. pdf icon
  255. Moskalev, E.A., Zavgorodnij, M.G., Majorova, S.P., Vorobjev, I.A., Jandaghi, P., Bure, I.V. & Hoheisel, J.D. (2011). Correction of PCR-bias in quantitative DNA methylation studies by means of cubic polynomial regression. Nucleic Acids Res. 39, e77. pdf icon
  256. Mustafa, S.A., Hoheisel, J.D. & Alhamdani, M.S.S. (2011). Secretome profiling with antibody microarrays. Mol. Biosyst. 7, 1795-1801. pdf icon
  257. Yepes, D., Jacob, A., Dauber, M., Costina, V., Hofheinz, R., Neumaier, M. & Findeisen, P. (2011). Substrate optimization and clinical validation of reporter peptides for MS-based protease profiling in serum specimens: a new approach for diagnosis of malignant diseases. Int. J. Oncol. 39, 145-154. pdf icon
  258. de Souza Rocha Simonini, P., Riazalhosseini, Y. & Hoheisel, J.D. (2011). Eine kleine Ribonukleinsäure mit großer Wirkung bei hormonsensitiven Brusttumoren. Geburtsh. & Frauenheilk. 71, 878-879. pdf icon
  259. Nibret, E., Youns, M., Krauth-Siegel, R.L. & Wink, M. (2011). Biological activities of Xanthatin from Xanthium strumarium leaves. Phytother. Res. 25, 1883-1890. pdf icon
  260. Bondar, A.N., Knapp-Mohammady, M., Suhai, S., Fischer, S. & Smith, J.C. (2011). The ground-state properties of the retinal revisited: quantum mechanical and classical mechanical computations of retinal proteins. Theor. Chem. Acc. 130, 1169-1183. pdf icon
  261. March, N.H. & Knapp-Mohammady, M. (2011). The inhomogeneous electron liquid in the ligand estradiol compared and contrasted with that in estrone. Phys. Chem. Liq. 49, 259-269.
  262. Piva, J.A.A.C., Silva, J.L.R., Raniero, L., Jalkanen, K.J., Martin, A.A. & Bohr, H.G. (2011). Overview of the use of theoriy to understand infrared and Raman spectra and images of biomolecules: colorectal cancer as an example. Theor. Chem. Acc. 130, 1261-1273. pdf icon
  263. Schmidt, R., Jacak, J., Schirwitz, C., Stadler, V., Michel, G., Marmé, N., Schütz, G.J., Hoheisel, J.D. & Knemeyer, J.-P. (2011). Single-molecule detection on a protein-array assay platform for the exposure of a tuberculosis antigen. J. Proteome Res.10, 1316-1322. pdf icon
  264. Holtrup, F., Bauer, A., Fellenberg, K., Hilger, R.A., Wink, M. & Hoheisel, J.D. (2011). Nemorosone specifically inhibits growth of pancreatic cancer cells and induces apoptosis via activation of the unfolded protein response (UPR). Brit. J. Pharmacol. 162, 1045-1059. pdf icon
  265. Alhamdani, M.S. & Hoheisel, J.D. (2011). Antibody microarrays in proteome profiling. Molecular Analysis and Genome Discovery (Rapley, R & Harbron, S., eds.), Wiley, 219-243.
  266. Youns, M., Hoheisel, J.D. & Efferth, T. (2011). Therapeutic and diagnostic applications of nanoparticles. Curr. Drug Targets 12, 357-365.
  267. March, N.H. & Knapp-Mohammady, M. (2011). Molecular versus tissue liquids: an atomic length? Phys. Chem. Liq. 49, 830-834.
  268. March, N.H. & Knapp-Mohammady, M. (2011). Aqueous microdroplet encapsulation of normal or cancerous single cells. Phys. Chem. Liq. 49, 409-413.
  269. Torres Salazar, A., Hoheisel, J.D., Youns, M. & Wink, M. (2011). Anti-inflammatory and anti-cancer activities of essential oils and their biological constituents. Int. J. Clin. Pharmacol. Ther. 49, 93-95.
  270. Sinha, R.K., Erlekam, U., Bythell, B.J., Paizs, B. & Maitre, P. (2011). Diagnosing the protonation site of b (2) peptide fragment ions using IRMPD in the X-H (X = O, N, and C) stretching region. J. Am. Soc. Mass Spectrom. 22, 1645-1650. pdf icon
  271. Bleiholder, C., Suhai, S., Harrison, A.,G. & Paizs, B. (2011). Towards understanding the tandem mass spectra of protonated oligopeptides. 2: the proline effect in collision-induced dissociation of protonated Ala-Ala-Xxx-Pro-Ala (Xxx = Ala, Ser, Leu, Val, Phe, and Trp). J. Am. Soc. Mass Spectrom. 22, 1032-1039. pdf icon
  272. March, N.H. & Knapp-Mohammady, M. (2011). The inhomogeneous electron liquid in some bioinorganic assemblies studied by density functional methods. Phys. Chem. Liq. 49, 259-269.
  273. Youns, M., Bauer, A., Reichling, J., Fellenberg, K., Efferth, T. & Hoheisel, J.D. (2011). Gene expression profiling identifies novel key players involved in chemopreventive effect of NS-398 on pancreatic cancer cells. Eur. J. Pharmacol. 650, 170-177.
  274. Schröder, C., Alhamdani, M.S.S., Fellenberg, K., Bauer, A., Jacob, A. & Hoheisel, J.D. (2011). Robust protein profiling with complex antibody microarrays in a dual-colour mode. Proteinarray Technology (Korf, U., ed.), Humana/Springer, 203-221.

  275. de Souza Rocha Simonini, P., Breiling, A., Gupta, N., Malekpour, M., Youns, M., Omranipour, R., Malekpour, F., Volinia, S., Croce, C.M., Najmabadi, H., Diederichs, S., Sahin, Ö., Mayer, D., Lyko, F., Hoheisel, J.D. & Riazalhosseini, Y. (2010). Epigenetically de-regulated microRNA-375 activates Estrogen Receptor alpha activity in breast cancer. Cancer Res. 70, 9175-9184. pdf icon
  276. Alhamdani, M.S., Schröder, C. & Hoheisel, J.D. (2010). Analysis conditions for proteomic profiling of mammalian tissue and cell extracts with antibody microarrays. Proteomics 10, 3203-3207. pdf icon
  277. Schröder, C., Jacob, A., Tonack, S., Radon, T., Sill, M., Zucknick, M., Rüffer, S., Costello, E., Neoptolemos, J., Crnogorac-Jurcevic, T., Bauer, A., Fellenberg, K. & Hoheisel, J.D. (2010). Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-specific antibodies. Mol. Cell. Prot. 9, 1271-1280. pdf icon
  278. Alhamdani, M.S.S., Schröder, C., Giese, N., Bauer, A. & Hoheisel, J.D. (2010). Single-step procedure for the isolation of proteins at near-native conditions from mammalian tissue for proteomic analysis on antibody microarrays. J. Prot. Res. 9, 963-971. pdf icon
  279. Schröder, C., Jacob, A., Rüffer, S., Fellenberg, K. & Hoheisel, J.D. (2010). Antibody microarrays for expression analysis. Antibody Engineering, Vol. 2 (Dübel, S., ed.), Springer Verlag, 429-445. pdf icon
  280. Sill, M., Schröder, C., Hoheisel, J.D., Benner, A. & Zucknick, M. (2010). Assessment and optimisation of normalisation methods for dual-colour antibody microarrays. BMC Bioinformatics 11, 556. pdf icon
  281. Gloriam, D.E., Orchard, S., Bertinetti, D., Bjorling, E., Bongcam-Rudloff, E., Bourbeillon, J., Bradbury, A.R., de Daruvar, A., Dübel, S., Frank, R., Gibson, T.J., Haslam, N., Herberg, F.W., Hiltke, T., Hoheisel, J.D., Kerrien, S., Koegl, M., Konthur, Z., Korn, B., Landegren, U., van der Maarel, S., Montecchi-Palazzi, L., Palcy, S., Rodriguez, H., Schweinsberg, S., Sievert, V., Stoevesandt, O., Taussig, M.J., Uhlen, M., Wingren, C., Gold, L., Woollard, P., Sherman, D.J. & Hermjakob, H. (2010). A community standard for the representation of protein affinity reagents. Mol. Cell. Prot. 9, 1-10. pdf icon
  282. Helwa, R. & Hoheisel, J.D. (2010). Analysis of DNA-protein interactions; from nitrocellulose filter-binding assays to microarray studies. Anal. Bioanal. Chem. 398, 2551-2561. pdf icon
  283. Böttcher, M., Kischkel, F. & Hoheisel, J.D. (2010). High-definition DNA methylation profiles from breast and ovarian carcinoma cell lines with differing doxorubicin resistance. PloS ONE 5, e11002. pdf icon
  284. Bythell, B.J., Knapp-Mohammady, M., Paizs, B. & Harrison, A.G. (2010). Effect of the His residue on the cyclization of b ions. J. Am. Soc. Mass Spectrom. 21, 1352-1363. pdf icon
  285. Uhlmann, S., Zhang, J.D., Schwager, A., Mannsperger, H., Riazalhosseini, Y., Burmester, S., Ward, A., Korf, U., Wiemann, S. & Sahin, O. (2010). miR-200bc/429 cluster targets PLCc1 and differentially regulates proliferation and EGF-driven invasion than miR-200a/141 in breast cancer. Oncogene 29, 4297-4306.
  286. Khan, M.S., Haas, F.H., Samami, A.A., Gholami, A.M., Bauer, A., Fellenberg, K., Reichelt, M., Hänsch, R., Mendel, R.R., Meyer, A.J., Wirtz, M. & Hell R. (2010). Sulfite reductase defines a newly discovered bottleneck for assimilatory sulfate reduction and is essential for growth and development in Arabidopsis thaliana. Plant Cell 22, 1216-1231. pdf icon
  287. Mraheil, M.A., Billion,, A., Kuenne, C., Pischimarov, J., Kreikemeyer, B., Engelmann, S., Hartke, A., Giard, J.-C., Rupnik, M., Vorwerk, S., Beier, M., Retey, J., Hartsch, T., Jacob, A., Cemic, F., Hemberger, J., Chakraborty1, T. & Hain, T. (2010). Comparative genome-wide analysis of small RNAs of major Gram-positive pathogens: from identification to application. Microb. Biotechnol. 3, 634-657. pdf icon
  288. Müller, P., Schmitt, E., Jacob, A., Hoheisel, J.D., Kaufmann, R., Cremer, C. & Hausmann, M. (2010). COMBO-FISH enables high precision localization microscopy as a prerequisite for nanostructure analysis of genome loci. Int. J. Mol. Sci. 11, 4094-4105. pdf icon
  289. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Toxicogenomics for the prediction of toxicity related to herbs from traditional chinese medicine. Planta Med. 76, 2019-2025. pdf icon
  290. Pinto, L., Efferth, T., Torres, A., Hoheisel, J.D. & Youns, M. (2010). Berberine selectively inhibits cell growth and mediates caspase-independent cell death in human pancreatic cancer cells. Planta Med. 76, 1155-1161.
  291. Mulyaningsih, S., Youns, M., El-Readi, M.Z., Ashour, M.L., Nibret, E., Sporer, F., Herrmann, F., Reichling, J. & Wink, M. (2010). Biological activity of the essential oil of Kadsura longipedunculata (Schisandraceae) and its major components. J. Pharm. Pharmacol. 62, 1037-1044.
  292. Hoheisel, J.D. (2010). Zellulären Übeltätern auf der Spur; Funktionelle Genom- und Proteomanalyse in der Krebsforschung. Labor & More 3.10, 29-32. pdf icon
  293. Keller, A., Lenhof, H.-P., Amarantos, I., Bauer, A., Giese, N., Hoheisel, J.D., Leidinger, P. & Meese, E. (2010). MicroRNA-Profile als vielversprechende Diagnosemethode. Laborwelt 1/10, 33.
  294. Moghaddas Gholami, A.M. & Fellenberg, K. (2010). Cross-species common regulatory network inference without requirement for prior gene affiliation. Bioinformatics 26, 1082-1090. pdf icon
  295. Böttcher, M. & Hoheisel, J.D. (2010). Pooled RNAi screens - technical and biological aspects. Curr. Genomics 11, 162-167.
  296. Böttcher, M., Fredebohm, J., Moghaddas Gholami, A., Hachmo, Y., Dotan, I., Canaani, D. & Hoheisel, J.D. (2010). Decoding pooled RNAi screens by means of barcode tiling arrays. BMC Genomics 11, 7. pdf icon
  297. Bythell, B.J., Csonka, I.P., Suhai, S., Barofsky, D.F. & Paizs, B.: Gas-phase structure and fragmentation pathways of singly protonated peptides with N-terminal arginine. J. Phys. Chem. 114, 15092-15105, 2010.
  298. Bythell, B.J., Maitre, P., Paizs, B.: Cyclization and Rearrangement Reactions of a(n) Fragment Ions of Protonated Peptides. J. Am. Chem. Soc. 132, 14766-14779, 2010.
  299. Turecek, F., Chung, T.W., Moss, C.L., Wyer, J.A., Ehlerding, A., Holm, A.I.S., Zettergren, H., Nielsen, S.B., Hvelplund, P., Chamot-Rooke, J., Bythell, B., Paizs, B.: The Histidine Effect. Electron Transfer and Capture Cause Different Dissociations and Rearrangements of Histidine Peptide Cation-Radicals. J. Am. Chem. Soc. 132, 10728-10740, 2010.
  300. Bythell, B.J., Dain, R.P., Curtice, S.S., Oomens, J., Steill, J.D., Groenewold, G.S., Paizs, B., Van Stipdonk, M.J.: Structure of [M + H - H2O](+) from Protonated Tetraglycine Revealed by Tandem Mass Spectrometry and IRMPD Spectroscopy. J. Phys. Chem. 114, 5076-5082, 2010.
  301. Bleiholder,C., Paizs, B.: Competing gas-phase fragmentation pathways of asparagine-, glutamine-, and lysine-containing protonated dipeptides. Theor. Chem. Accounts 125, 387-396, 2010.
  302. Knapp-Mohammady, M. & March, N.H. (2010). Quantum-chemical study of the potential anti-cancer drug Ru-NAMI-A in complex with estrogen and the simulated VA and VCD spectra of estrogen, the Ru-NAMI-A drug, and possible/proposed estrogen-Ru-NAMI-A complexes. Theor. Chem. Acc. 125, 293-303. pdf icon
  303. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Applications of microarray technology in ethnomedicinal plant research. Curr. Adv. Ethnomed. Plants (Rios, J.L., ed.), 424-443.
  304. Youns, M., Hoheisel, J.D. & Efferth, T. (2010). Traditional Chinese medicine (TCM) for molecular targeted therapies of tumors. Curr. Drug Discov. Technol. 7, 37-45.
  305. Kramer, S., Queiroz, R., Ellis, L., Hoheisel, J.D., Clayton, C. & Carrington, M. (2010). The RNA helicase DHH1 is central to the correct expression of many developmentally regulated mRNAs in trypanosomes. J. Cell Sci. 123, 699-711. pdf icon
  306. Simo, G., Herder, S., Cuny, G. & Hoheisel, J.D. (2010). Identification of subspecies specific genes differentially expressed in procyclic forms of Trypanosoma brucei subspecies. Infect. Genet. Evol. 10, 229-237. pdf icon
  307. Soza-Ried, J., Hotz-Wagenblatt, A., Glatting, K.H., del Val, C., Fellenberg, K., Bode, H.R., Frank, U., Hoheisel, J.D. & Frohme, M. (2010). The transcriptome of the colonial marine hydroid Hydractinia echinata. FEBS J. 277, 197-209. pdf icon

  308. Archer, S., Luu, V.-D., Queiroz, R., Brems, S. & Clayton, C. (2009). Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle. PLoS Pathogen 5, e1000565. pdf icon
  309. Hoheisel, J.D. (2009). Zurück in die Zukunft der Sequenzierung (Editorial). BIOforum 6, 3. pdf icon
  310. Youns, M., Efferth, T. & Hoheisel, J.D. (2009). Microarray analysis of gene expression in medicinal plant research. Drug Discov. Ther. 3, 200-207. pdf icon
  311. Queiroz, R., Benz, C., Fellenberg, K., Schindler, V., Hoheisel, J.D. & Clayton, C. (2009). Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons. BMC Genomics 10, 495. pdf icon
  312. Pfannschmidt, J., Bade, S., Hoheisel, J.D., Muley, T., Dienemann, H., Herpel, E. (2009). Identification of immunohistochemical prognostic markers for survival after resection of pulmonary metastases from colorectal carcinoma. Thorac. Cardiov. Surgeon 57, 403–408. pdf icon
  313. Alhamdani, M.S.S., Schröder, C. & Hoheisel, J.D. (2009). Oncoproteomic profiling with antibody microarrays. Genome Medicine 1, 68. pdf icon
  314. Ashour, M., El-readi, M., Youns, M., Mulyaningsih, S., Sporer, F., Efferth, T. & Wink, M. (2009). Chemical composition and biological activities of the essential oil obtained from Bupleurum marginatum (Apiaceae). J. Pharm. Pharmacol. 61, 1079-1087.
  315. Youns, M., Efferth, T., Reichling, J., Fellenberg, K., Bauer, A. & Hoheisel, J.D. (2009). Gene expression profiling identifies novel key players involved in the cytotoxic effect of Artesunate on pancreatic cancer cells. Biochem. Pharmacol. 78, 273-283. pdf icon
  316. Börner, A., Warnken, U., Schnölzer, M., von Hagen, J., Giese, N., Bauer, A. & Hoheisel, J.D. (2009). Subcellular protein extraction from human pancreatic cancer tissues. BioTechniques 46, 297-304. pdf icon
  317. Ketterer, K., Kong, B., Frank, D., Giese, N., Bauer, A., Hoheisel, J.D., Korc, M., Kleeff, J., Michalski, C. & Friess, H. (2009). Neuromedin U is overexpressed in pancreatic cancer and increases invasiveness via the hepatocyte growth factor c-Met pathway. Cancer Lett. 277, 72-81. pdf icon
  318. Bau, S., Schracke, N., Kränzle, M., Wu, H., Hoheisel, J.D., Beier, M. & Summerer, D. (2009). Targeted next-generation-sequencing by specific capture of multiple genomic loci using low-volume microfluidic DNA-arrays. Anal. Bioanal. Chem. 393, 171-175. pdf icon
  319. Wurst, M., Robles, A., Po, J., Luu, V.-D., Brems, S., Marentije, M., Stoitsova, S., Quijada, L., Hoheisel, J.D., Stewart, M., Hartmann, C. & Clayton, C. (2009). An RNAi screen of the RRM-domain proteins of Trypanosoma brucei. Mol. Biochem. Parasit. 163, 61-65. pdf icon
  320. Dannewitz, B., Tomakidi, P., Syagailo, Y., Kohl, A., Staehle, H.J., Eickholz, P., Komposch, G. & Steinberg, T. (2009). Elevation of collagen type I in fibroblast–keratinocyte cocultures emphasizes the decisive role of fibroblasts in the manifestation of the phenotype of cyclosporin A-induced gingival overgrowth. J. Period. Res. 44, 62-72. pdf icon
  321. Bauer, A., Kleeff, J., Bier, M., Wirtz, M., Kayed, H., Esposito, I., Korc, M., Hafner, M., Hoheisel, J.D. & Friess, H. (2009). Identification of malignancy factors by analysing cystic tumours of the pancreas. Pancreatology 9, 34-44. pdf icon

  322. Riazalhosseini, Y. & Hoheisel, J.D. (2008). Do we use the appropriate controls for the identification of informative methylation markers for early cancer detection? Genome Biol. 9, 405. pdf icon
  323. Clayton, C., Schwede, A., Stewart, M., Robles, A., Benz, C., Po, J., Wurst, M., Queiroz, R. & Archer, S. (2008). Control of mRNA degradation in trypanosomes. Biochem Soc. Trans. 36, 520-521. pdf icon
  324. Beatriz Bermúdez, B., López, S., Pacheco, Y.M., Villar, J., Muriana, F.J.G., Hoheisel, J.H., Bauer, A. & Abia, R. (2008). The influence of postprandial triclyceride-rich lipoproteins on lipid-mediated gene expression in smooth muscle cells of the human coronary artery. Cardiovasc. Res. 79, 294-303. pdf icon
  325. Vorwerk, S., Ganter, K., Cheng, Y., Hoheisel, J.D., Stähler, P.F. & Beier, M. (2008). Microfluidic-based enzymatic on-chip labeling of miRNAs. New Biotechnol. 25, 142-149. pdf icon
  326. Selak, N., Bachrati, C.Z., Shevelev, I., Dietschy, T., Jacob, A., Hübscher, U., Hoheisel, J.D., Hickson, I.D. & Stagljar, I. (2008). The Bloom’s syndrome helicase (BLM) interacts physically and functionally with p12, the smallest subunit of human DNA polymerase delta. Nucleic Acids Res. 36, 5166-5179. pdf icon
  327. Pullat, J., Kusnezow, W., Jakson, K., Beier, M., Hoheisel, J.D. & Metspalu, A. (2008). Mutational analysis and SNP typing by an Arrayed Primer Extension (APEX) reaction on an in situ-synthesised 5'-3' oligonucleotide microarray. New Biotechnol. 25, 131-141. pdf icon
  328. Haas, F.H., Heeg, C., Queiroz, R., Bauer, A., Wirtz, M. & Hell, R. (2008). Mitochondrial serine acetyltransferase functions as a pacemaker of cysteine synthesis in plant cells. Plant Physiol. 148, 1055-1067. pdf icon
  329. Kramer, S., Queiroz, R., Ellis, L., Webb, H., Hoheisel, J.D., Clayton, C. & Carrington, M. (2008). Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2alpha phosphorylation at Thr169. J. Cell Sci. 121, 3002-3014. pdf icon
  330. Schanné, M. , Bodem, J., Gerhold-Ay, A., Jacob, A., Fellenberg, K., Kräusslich, H.-G. & Hoheisel, J.D. (2008). Genotypic resistance testing in HIV by Arrayed Primer Extension. Anal. Bioanal. Chem. 391, 1661-1669. pdf icon
  331. Litovkin, K.V., Ivanova, O.V., Bauer, A., Hoheisel, J.D., Bubnov, V.V. & Zaporozhan, V.N. (2008). Microarray study of gene expression in uterine leiomyoma. Exp. Oncol. 30, 106-111. pdf icon
  332. Hoheisel, J.D. (2008). Microarray-Technologie; funktionelle Analysen der genetischen Information. Praxis Naturwiss. Biol. 2/57, 6-8.
  333. Beier, V. & Hoheisel, J.D. (2008). MicroRNAs; small molecules with big impact in cancer. Bioforum Eur. 12/08, 2-3. pdf icon
  334. Friedrich, A., Müller, M., Nolte, O., Wolfrum, J., Sauer, M., Hoheisel, J.D., Knemeyer, J.P. & Marmé, N. (2008). Highly specific identification of single nucleic polymorphism in M. tuberculosis using smart probes and single-molecule fluorescence spectroscopy in combination with blocking oligonucleotides. Proc. SPIE. 6867, 68670N (8 pages).
  335. Marmé, N., Lee, H., Friedrich, A., Park, C.W., Fiore, J., Nesbitt, D.J. & Knemeyer, J.P. (2008). Suppressing nonspecific adsorption of proteins on the single-molecular level. Proc. SPIE 6862, 686212 (7 pages).

  336. Marmé, N., Sauer, M., Wolfrum, J., Hoheisel, J.D. & Knemeyer, J.-P. (2007). Smart Probes – a novel class of self-quenching DNA probes. Res. Adv. Nucleic Acids Res. 1, 1-10.
  337. Schanné, M., Beier, M. & Hoheisel, J.D. (2007). Unravelling the epigenetic code. Science Inside 2, 52-53. pdf icon
  338. Schanné, M., Riazalhosseini, Y., Beier, V., Gröne, H.-J., Waha, A., Schuster, M., Stähler, P., Lyko, F. & Hoheisel, J.D. (2007). Ein Programm für jeden Zelltyp. GenomXPress 2/07, 35-37.
  339. Hartmann, C., Benz, C., Brems, S., Ellis, L., Luu, V.-D., Stewart, M., D'Orso, I., Busold, C., Fellenberg, K., Frasch, A.C.C., Carrington, M., Hoheisel, J.D. & Clayton, C.E. (2007). The small trypanosome RNA-binding proteins TbUBP1 und TbUBP2 influence expression of F-box protein mRNAs in bloodstream trypanosomes. Eucaryotic Cell 6, 1964-1978. pdf icon
  340. Staudt, T.M., Kräusslich, H.G., Marmé, N. & Knemeyer, J.P. (2007). Self-quenching peptide substrates for ultra-sensitive HIV-protease assays. Int. J. Environ. Anal. Chem. 87, 731-743.
  341. Bauer, A., Solinas-Toldo, S. & Hoheisel, J.D. (2007). Gendiagnostik; methodische Grundlagen. Grundlagen der Molekularen Medizin; 3. Auflage (Ganten, D. & Ruckpaul, K., eds.), Springer Verlag, 346-362.
  342. Moskalyov, E.A., Eprintsev, A.T. & Hoheisel, J.D. (2007). DNA methylation profiling in cancer: from single nucleotides towards the methylome. Molekulyarnaya Biologiya 41, 793-807. (in Russian)  Mol. Biol. 41, 723-736. (in English)  pdf icon
  343. Marmé, N. & Knemeyer, J.P. (2007). Sensitive bioanalytics: combining single-molecule spectroscopy with mono-labelled, self-quenching probes. Anal. Bioanal. Chem. 388, 1075-1085. pdf icon
  344. Pullat, J., Fleischer, R., Becker, N., Beier, M., Metspalu, A. & Hoheisel, J.D. (2007). Optimisation of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays: analysing variations in immune regulator genes of hay-fever samples. BMC Genomics 8, 282. pdf icon
  345. Kusumawidjaja, G., Kayed, H., Giese, N., Bauer, A., Erkan, M., Giese, T., Hoheisel, J.D., Friess, H. & Kleeff, J. (2007). Basic transcription factor 3 (BTF3) regulates transcription of tumor-associated genes in pancreatic cancer cells. Cancer Biol. Ther. 6, 367-376. pdf icon
  346. Loos, M., Bergmann, F., Bauer, A., Hoheisel, J.D., Esposito, I., Kleeff, J., Schirmacher, P., Büchler, M.W., Klöppel, G. & Friess, H. (2007). Solid type clear cell carcinoma of the pancreas: differential diagnosis of an unusual case and review of the literature. Virchows Arch. 450, 719-726. pdf icon
  347. Kusnezow, W., Banzon, V., Schröder, C., Schaal, R., Hoheisel, J.D., Rüffer, S., Luft, P., Duschl, A. & Syagailo, Y.V. (2007). Comparison of various labeling substances for antibody microarray based profiling of clinical specimens. Proteomics 7, 1786-1799. pdf icon
  348. Knemeyer, J.P. & Marmé, N. (2007). Recent patents on self-quenching DNA probes. Recent Pat. DNA Gene Seq. 1, 145-157. pdf icon
  349. Denninger, V., Figarella, K. Schönfeld, C., Brems, S., Busold, C., Lang, F., Hoheisel, J.D. & Duszenko, M. (2007). Troglitazone induces differentiation in Trypanaosoma brucei. Exp. Cell Res. 313, 1805-1819. pdf icon
  350. Marmé, N., Friedrich, A., Hoheisel, J.D. & Knemeyer, J.-P. (2007). Smart Probes for the highly sensitive identification of single nucleic polymorphism on the single molecular level. FEBS Lett. 581, 1644-1648. pdf icon
  351. Jesnowski, R., Zubakov, D., Faissner, R., Ringel, J., Hoheisel, J.D., Lösel, R., Schnölzer; M. & Löhr, M. (2007). Genes and proteins differentially expressed during in vitro malignant transformation of bovine pancreatic duct cells. Neoplesia 9, 136-146. pdf icon
  352. Beier, V., Mund, C. & Hoheisel, J.D. (2007). Monitoring methylation changes in cancer. Adv. Biochem. Eng. Biotechnol. 104, Volume: Analytics of Protein-DNA Interactions (Seitz, H., Hrsg.), Springer Verlag, 1-11.
  353. Giordano, F.A., Hotz-Wagenblatt, A., Lauterborn, D., Appelt, J.U., Fellenberg, K., Nagy, K.Z., Zeller, W.J., Suhai, S., Fruehauf, S.& Laufs, S. (2007). New bioinformatic strategies to rapidly characterize retroviral integration sites of gene therapy vectors. Meth. Inform. Med. 46, 542-547.
  354. Friedrich, A., Habl, G., Sauer, M., Wolfrum, J., Hoheisel, J.D., Marmé, N. & Knemeyer, J.P. (2007). New hairpin-structured DNA probes: alternatives to classical molecular beacons. Proc. SPIE 6444, 64440M.
  355. Schliwka, J., Pullat, J., DeVilliers, E.-M., Hoheisel, J.D. & Beier, M. (2007). Mit der Geniom-Microarray Technologie HPV-Genotypen auf der Spur. Biospectrum 01.07, 52-53.
  356. Taussig, M.J., Stoevesandt, O., Borrebaeck, C., Bradbury, A., Cahill, D., Cambillau, C., de Daruvar, A., Dübel, S., Eichler, J., Frank, R., Gibson, T., Gloriam, D., Gold, L., Herberg, F., Hermjakob, H., Hoheisel, J.D., Joos, T., Kallioniemi, O., Koegl, M., Konthur, Z., Korn, B., Kremmer, E., Krobitsch, S., Landegren, U., van der Marel, S., McCafferty, J., Muyldermans, S., Nygren, P.A., Palcy, S., Plückthun, A., Polic, B., Przybylski, M., Saviranta, P., Sawyer, A., Sherman, D.J., Skerra, A., Templin, M., Ueffing, M. & Uhlén, M. (2007). ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome. Nature Meth. 4, 13-17. pdf icon
  357. Hauser, M., Horn, P., Tournu, H., Hauser, N.C., Hoheisel, J.D., Brown, A.J.P. & Dickinson, J.R. (2007). A transcriptome analysis of isoamyl alcohol-induced filamentation in yeast reveals a novel role for Gre2p as isovaleraldehyde reductase. FEMS Yeast Res. 7, 84-92. pdf icon
  358. Marmé, N., Knemeyer, J.P. & Hoheisel, J.D. (2007). Imaging of single molecules in living cells. Anal. Bioanal. Chem. 387, 37-40. pdf icon

  359. Fellenberg, K., Busold, C., Witt, O., Bauer, A., Beckmann, B., Hauser, N.C., Frohme, M., Winter, S., Dippon, J. & Hoheisel, J.D. (2006). Systematic interpretation of microarray data using experiment annotations. BMC Genomics 7, 319. pdf icon
  360. Hauser, N.C., Martinez, R., Jacob, A., Rupp, S., Hoheisel, J.D. & Matysiak, S. (2006). Utilising the left-helical conformation of L-DNA for analysing different marker types on a single universal microarray platform. Nucleic Acids Res. 34, 5101-5111. pdf icon
  361. Luu, V.-D., Brems, S., Hoheisel, J.D., Burchmore, R., Guilbride, D.L. & Clayton, C.E. (2006). Functional analysis of Trypanosoma brucei PUF1. Mol. Biochem. Parasit. 150, 340-349.
  362. Gruegelsiepe, H., Brandt, O. & Hartmann, R.K. (2006). Antisense Inhibition of RNase P; mechanistic aspects and application to live bacteria. J. Biol. Chem. 281, 30613–30620. pdf icon
  363. Marmé, N., Friedrich, A., Müller, M., Nolte, O., Wolfrum, J., Hoheisel, J.D., Sauer, M. & Knemeyer, J.P. (2006). Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy. Nucleic Acids Res. 34, e90. pdf icon
  364. Kusnezow, W., Syagailo, Y.V., Rüffer, S., Baudenstiel, N., Gauer, C., Hoheisel, J.D., Wild, D.G. & Goychuk, I.(2006). Optimal design of microarray immunoassays to compensate for kinetic limitations – theory and experiment. Mol. Cell. Prot. 5, 1681-1696. pdf icon
  365. Angenendt, P., Kreutzberger, J., Glökler, J. & Hoheisel, J.D. (2006). Generation of high-density protein-microarrays by cell-free in situ expression of unpurified PCR products. Mol. Cell. Prot. 5, 1658-1666. pdf icon
  366. Schütz, S., Chemnitz, J., Spillner, C., Frohme, M., Hauber, J. & Kehlenbach; R.H. (2006). Stimulated expression of mRNAs in activated T cells depends on a functional CRM1 nuclear export pathway. J. Mol. Biol. 358, 997-1009. pdf icon
  367. Marmé, N., Friedrich, A., Denapaite, D., Hakenbeck, R. & Knemeyer, J.-P. (2006). Single nucleotide polymorphism analysis using different colored dye dimer probes. Chem. Phys. Lett. 428, 440–445. pdf icon
  368. Hoheisel, J.D. (2006). Microarrays; an overview. Encyclop. Genet. Genomics Proteomics Bioinf. (Dunn, M., Jorde, L., Little, P. & Subramaniam, S., eds.), Wiley-VHC, ISBN-10:0-470-84974-6.
  369. Altenhein, B., Becker, A., Busold, C., Beckmann, B., Hoheisel, J.D. & Technau, G.M. (2006). Expression profiling of glial genes during Drosophila embryogenesis. Develop. Biol. 296, 545-560. pdf icon
  370. Jacob, A., Brandt, O. & Hoheisel, J.D. (2006). PNA Chips. Encyclop. Ref. Genomics Proteomics Mol. Med. (Ganten, D. & Ruckpaul, K., eds.), 1422-1425. pdf icon
  371. Nolte, O., Müller, M., Häfner, B., Knemeyer, J.P., Stöhr, K., Wolfrum, J., Hakenbeck, R., Denapaite, D., Schwarz-Finsterle, J., Stein, S., Herten, D.P., Hausmann, M. & Sauer, M. (2006) Novel singly labeled probes for identification of micro-organisms, detection of antibiotic resistance genes and mutations, and tumor diagnosis (Smart Probes). Biophotonics: visions for a better health care (Popp, J., ed.), WILEY-VCH, Weinheim.
  372. Brandt, O., Feldner, J., Hellweg, S., Schröder, M., Stephan, A., Arlinghaus, H.F., Hoheisel, J.D. & Jacob, A. (2006). Development towards label and amplification-free genotyping of genomic DNA. Appl. Surface Sci. 252, 6935-6940.
  373. Hellweg, S., Jacob, A., Hoheisel, J.D., Grehl, T. & Arlinghaus, H.F. (2006). Mass spectrometric characterization of DNA microarrays as a function of primary ion species. Appl. Surface Sci. 252, 6742-6745. pdf icon
  374. Hoheisel, J.D. (2006). DNA-Microarray Technologie. Bioanalytik (Lottspeich, E. & Engels, J.W., eds.), Elsevier, Heidelberg, 967-978.
  375. Hoheisel, J.D. (2006). Microarray technology; beyond transcript profiling and genotype analysis. Nature Rev. Genet. 7, 200-210. pdf icon
  376. Reva, O.N., Weinel, C., Weinel, M., Böhm, K., Stjepandic, D., Hoheisel, J.D. & Tümmler, B. (2006). Functional genomics of stress response in Pseudomonas putida KT2440. J. Bacteriol. 188, 4079-4092. pdf icon
  377. Sobek, J., Bartscherer, K., Jacob, A., Hoheisel, J.D. & Angenendt, P. (2006). Microarray technology as a universal tool for high-throughput analysis of biological systems. Comb. Chem. High-Throughput Screening 9, 365-380. pdf icon
  378. Stähler, P., Beier, M., Gao, X. & Hoheisel, J.D. (2006). Another side of genomics: synthethic biology as a means for the exploitation of whole-genome sequence information. J. Biotechnol. 124, 206-212. pdf icon
  379. Kusnezow, W., Syagailo, Y.V., Goychuk, I., Hoheisel, J.D. & Wild, D.G. (2006). Antibody microarrays: the crucial impact of mass transport on assay kinetics and sensitivity. Expert Rev. Mol. Diagn. 6, 111-124. pdf icon
  380. Kusnezow, W., Syagailo, Y.V., Rüffer, S., Klenin, K., Sebald, W., Hoheisel, J.D., Gauer, C. & Goychuk, I. (2006). Kinetics of antigen binding to antibody microspots: strong limitation by mass transport to the surface. Proteomics 6, 794-803. pdf icon
  381. Syagailo, Y.V., Kusnezow, W. & Hoheisel, J.D. (2006). Microarray-based expression profiling; from technological basics to diagnostic perspectives. Apoptosis and Cancer Therapy (Debatin, K.M. & Fulda, S., eds.), Wiley-VHC, 60-85.
  382. Steinberg, T., Dannewitz, B., Tomakidi, P., Hoheisel, J.D., Mussig, E., Kohl, A. & Nees, M. (2006). Analysis of interleukon-1beta-modulated mRNA gene transcription in human gingival keratinocytes by epithelia-specific cDNA microarrays. J. Periodontal Res. 41, 426-446. pdf icon
  383. Möhrlen, F., Maniura, M., Plickert, G., Frohme, M. & Frank, U. (2006). Evolution of astacin-like metalloproteases in animals and their function in development. Evolut. Develop. 8, 223-231. pdf icon
  384. Mali, B., Soza Ried, J., Frohme, M. & Frank, U. (2006). Structural but not functional conservation of an immune molecules: a tachylectin-like gene in Hydractinia. Dev. Comp. Immunol. 30, 275-281. pdf icon
  385. Frohme, M. & Hoheisel, J.D. (2006). Representational difference analysis; a methodology to study differential gene expression. Cell Biology: A Laboratory Handbook. 3rd Ed. (Celis, J., ed.), Elsevier, 113-120.

  386. Nees, M., Kusnezow, W. & Woodworth, C.D. (2005). Microarrays: small spots produce major advances in pharmacogenomics. Novel Anticancer Agents: Strategies for Discovery and Clinical Testing (Adej, A., Buolamwini, J.K., eds.), Elsevier Inc..
  387. Buchholz, M., Kestler, H.A., Bauer, A., Böck, W., Rau, B., Leder, G., Kratzer, W., Bommer, M., Adler, G., Hoheisel, J.D. & Gress, T.M. (2005). Specialized DNA arrays for the differentiation of pancreatic tumors: a solution for a common diagnostic dilemma. Clin. Cancer Res. 11, 8048-8054. pdf icon
  388. Klenin, K.V., Kusnezow, W. & Langowski, J. (2005). Kinetics of protein binding in solid-phase immunoassays: theory. J. Chem. Phys. 122, Art. No. 214715. pdf icon
  389. Rapp, B., Herrmann, D., Guber, A., Welle, A., Schild, D., Jacob, A., Dauber, M. & Hoheisel, J.D. (2005). Mikrotiterplatte mit integrierter funktionalisierter Filterstruktur. Proceed. Mikrosystemtechnik Kongress 2005 (ISBN 3-8007-2926-1), VDE Verlag GmbH, Berlin und Offenbach, 773-776.
  390. Kersten, B., Wanker, E.E., Hoheisel, J.D. & Angenendt, P. (2005). Multiplex approaches in protein microarray technology. Expert Rev. Proteomics 2, 499-510. pdf icon
  391. Marmé, N., Habl, G. & Knemeyer, J.-P. (2005). Aggregation behavior of the red-absorbing oxazine derivative MR 121: A new method for determination of pure dimer spectra. Chem. Phys. Lett. 408, 221-225. pdf icon
  392. Habl, G. Böhm, H., Marmé, N. & Knemeyer, J.-P. (2005). A new assay for single nucleotide polymorphism analysis based on displacement reactions in PNA-DNA double helices. Int. J. Environ. Anal. Chem. 85, 613-623.
  393. Schäfer, G., Müller, M., Hafner, B., Habl, G., Molte, O., Marme, N., Knemeyer, J.-P. (2005). Self-quenching DNA probes based on aggregation of fluorescent dyes. Proc. SPIE 5704, 30.
  394. Staudt, T.M., Knemeyer, L., Kräusslich, H.-G., Knemeyer, J.-P., & Marme, N. (2005). Novel fluorescently labeled enzyme substrates for the sensitive detection of HIV-protease. Proc. SPIE 5704, 112.
  395. Busold, C., Winter, S., Hauser, N., Bauer, A., Dippon, J., Hoheisel, J.D. & Fellenberg, K. (2005). GO-annotations in correspondence analysis facilitate interpretation of microarray data. Bioinformatics 21, 2424-2429. pdf icon
  396. Mund, C., Beier, V., Bewerunge, P., Dahms, M., Lyko, F. & Hoheisel, J.D. (2005). Array-based analysis of genomic DNA methylation patterns of the tumour suppressor gene p16 promoter in colon carcinoma cell lines. Nucleic Acids Res. 33, e73. pdf icon
  397. Angenendt, P. (2005). Progress in protein and antibody microarray technology. Drug Discovery Today 10, 503-511. pdf icon
  398. Beier, V., Mund, C., Schanne, M., Lyko, F. & Hoheisel, J.D. (2005). Characterisation of genomic methylation patterns in tumours. Exocrine Pancreas Cancer (Gress, T.M., Neoptolemos, J.P., Lemoine, N.R. & Real, F.X., eds.), Solvay, 252-258. pdf icon
  399. Buchholz, M., Kestler, H.A., Bauer, A., Hoheisel, J.D. & Gress, T.M. (2005). Development of diagnostic arrays for the differential diagnosis of a pancreatic mass. Exocrine Pancreas Cancer (Gress, T.M., Neoptolemos, J.P., Lemoine, N.R. & Real, F.X., eds.), Solvay, 394-401. pdf icon
  400. Schanne, M., Bodem, J., Kräusslich, H.G., Jacob, A. & Hoheisel, J.D. (2005). Microarray-basierte Resistenzbestimmung in HIV. LaborMedizin & Diagnostik 01.05, 19.
  401. Kusnezow, W., Pulli, T., Syagailo, Y. & Hoheisel, J.D. (2005). Microarray immunoassay of complex specimens; problems and technological challenges. Handbook of Immunohistochemistry & In Situ Hybridisation of Human Carcinomas, Vol. 2 (Hayat, M.A., ed.), 23-35.
  402. Brems, S., Guilbruide, L., Gundlesdodjir-Planck, D., Busold, C., Luu, V.-D., Schanne, M., Hoheisel, J.D. & Clayton, C. (2005). The transcriptomes of Trypanosoma brucei Lister 427 and TREU927 bloodstrem and procyclic trypomastigotes. Mol. Biochem. Parasit. 139, 163-172. pdf icon
  403. Beier, M. & Hoheisel, J.D. (2005). DNA-microarray preparation by light-controlled in situ synthesis. Curr. Protocols Nucleic Acid Chem., Unit 12.5. pdf icon

  404. Guduric-Fuchs, J., Möhrlen, F., Frohme, M., Frank, U. (2004). A fragile X mental retardation-like gene in a cnidarian. Gene 343, 231–238. pdf icon
  405. Mali, B., Möhrlen, F., Frohme, M. & Frank, U. (2004). A putative double role of a chitinase in a cnidarian: pattern formation and immunity. Develop. Comp. Immunol. 28, 973–981.
  406. Malanchi, I., Accardi, R., Diehl, F., Smet, A., Androphy, E., Hoheisel, J.D. & Tommasino, M. (2004). Human papillomavirus type 16 E6 promotes retinoblastoma protein phosphorylation and cell cycle progression. J. Virol. 78, 13769-13778.
  407. Bey, M., Stüber, K., Fellenberg, K., Schwarz-Sommer, Z., Sommer, H., Saedler, H. & Zachgo, S. (2004). Characterization of Antirrhinum petal development and identification of target genes of the class B MADS-box Gene DEFICIENS. Plant Cell 16, 3197-3215.
  408. Brandt, O. & Hoheisel, J.D. (2004). Peptide nucleic acids on microarrays and other biosensors. Trends Biotechnol. 22, 617-622.
  409. Beier, M. & Hoheisel, J.D. (2004). Synthesis of 3’-O-NPPOC-protected 5’-O-phosphoramidites. Curr. Protocols Nucleic Acid Chem., Unit 12.3.
  410. Beier, M. & Hoheisel, J.D. (2004). Derivatization of solid supports. Curr. Protocols Nucleic Acid Chem., Unit 12.4.
  411. Brandt, R., Grützmann, R., Bauer, A., Jesnowski, R., Ringel, J., Löhr, M., Pilarsky, C. & Hoheisel, J.D. (2004). DNA-microarray analysis of pancreatic malignancies. Pancreatology 4, 587-597.
  412. Brors, B. & Fellenberg, K. (2004). Bioinformatik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 409-440.
  413. Frohme, M. & Wiemann, S. (2004). Funktionelle Genomik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 339-384.
  414. Frohme, M. & Wiemann, S. (2004). Genomik. Molekulare Biotechnologie; Konzepte und Methoden (Wink, M., ed.), Wiley-VCH Verlag, Weinheim, 287-338.
  415. Arlinghaus, H.F., Schröder, M., Feldner, J.C., Brandt, O., Hoheisel, J.D. & Lipinsky, D. (2004). Development of PNA microarrays for gene diagnostics with TOF-SIMS. Appl. Surface Sci. 231–232, 392–396. pdf icon
  416. Jacob, A., Brandt, O., Stephan, A. & Hoheisel, J.D. (2004). PNA Microarrays. Methods in Molecular Biology (Niemeyer, C., ed.), Humana Press, Totowa, 283-294.
  417. Beier, V., Bauer, A., Baum, M. & Hoheisel, J.D. (2004). Fluorescent sample labelling for DNA-microarray analyses. Methods in Molecular Biology (Niemeyer, C., ed.), Humana Press, Totowa, 127-136.
  418. Hollich, V., Johnson, E., Furlon, E.E., Beckmann, B., Celinker, S. & Hoheisel, J.D. (2004). Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource. Biotechniques 37, 282-284.
  419. Kusnezow, W., Pulli, T., Witt, O. & Hoheisel, J.D. (2004). Solid support for protein microarrays and related devices. Protein Microarrays (Schena, M., Hrsg.), Jones and Bartlett, Sudbury, MA, 247-284.
  420. Fleischer, R., Frohme, M. & Hoheisel, J.D. (2004) Komplexe Microarrays in Krebsforschung und -diagnose. BIOspektrum 04/04, 434-436.
  421. Hagen, I., Ecker, M., Lagorce, A., Francois, J.M., Sestak, S., Rachel., R., Grossmann, G., Hauser, N.C., Hoheisel, J.D., Tanner, W. & Strahl, S. (2004). Sed1p and Srl1p are required to compensate for cell wall instability in Saccharomyces cerevisiae mutants defective in multiple GPI-anchored mannoproteins. Mol. Microbiol. 52, 1413-1425.
  422. Esposito, I., Bauer, A., Hoheisel, J.D., Kleeff, J., Friess, H., Büchler, M.W., Bergmann, F., Rieker, R.J., Otto, H.F., Klöppel, G., & Penzel, R. (2004). Microcystic tubulopapillary carcinoma of the pancreas: a new tumor entity. Virchows Arch. 444, 447-453.
  423. Beier, V. & Hoheisel, J.D. (2004). Charakterisierung von DNA-Methylierungsmustern mit Hilfe von Oligonukleotid-Microarrays. BIOforum 05/04, 31-33.
  424. Boutros, M., Kiger, A.A., Armknecht, S., Kerr, K., Hild, M., Koch, B., Haas, S.A., Beckmann, B., Vingron, M., Sauer, F., Hoheisel, J.D., Paro, R. and Perrimon, N. (2004). Genome-wide RNAi analysis of growth and viability in Drosophila cells. Science 303, 382-385.

  425. Beckmann, B., Hild, M., Haas, S.A., Koch, B., Solovjev, V., Busold, C., Fellenberg, K, Boutros, M., Vingron, M., Sauer, F., Hoheisel, J.D. & Paro, R. (2003). An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome. Genome Biol. 5, R3.
  426. Yuan, L., An, H.X., Deng, X.L.& Li, Z.Y. (2003). Regulation of leptin on insulin secretion and sulfonulurea receptor 1 transcription level in isolated rats pancreatic islets. Chinese Med. J. 116, 868-872.
  427. Yuan, L., An, H.X., Deng, X.L., Chen, L.L. & Li, Z.Y. (2003). Rosiglitazone reverses insulin secretion altered by chronic exposure to free fatty acid via IRS-2-associated phosphatidylinositol 3-kinase pathway. Acta Pharmacol. Sinica 24, 429-434.
  428. Parker, N.B., Yang, X.D., Hanke, J., Mason, K.A., Schowen, R.L., Borchardt, R.T. & Yin, D.H. (2003). Trypanosoma cruzi: molecular cloning and characterization of the S-adenosylhomocysteine hydrolase. Exp. Parasitol. 105, 149-158.
  429. Hoheisel, J.D. (2003). DNA-Microarrays in der Routine. Forschung & Diagnostik 1, 34-35.
  430. Bauer, A., Beckmann, B., Busold, C., Brandt, O., Kusnezow, W., Pullat, J., Aign, V., Fellenberg, K., Fleischer, R., Jacob, A., Frohme, M. & Hoheisel, J.D. (2003). Use of complex DNA- and antibody-microarrays as tools in functional analyses. Comp. Funct. Genom. 4, 520-524.
  431. Aign, V. & Hoheisel, J.D. (2003). Analysis of nutrient-dependent transcript variations in Neurospora crassa. Fungal Genet. Biol. 40, 225-233.
  432. Jacob, A., Brandt, O., Würtz, S., Stephan, A., Schnölzer, M. & Hoheisel, J.D. (2003). Production of PNA-arrays for nucleic acid detection. Peptide Nucleic Acids; Protocols and Applications (Nielsen, P.E., ed.), Horizon Bioscience, Wymondham, 261-279.
  433. Brandt, O., Feldner, J., Stephan, A., Schröder, M., Schnölzer, M. Arlinghaus, H.F., Hoheisel, J.D. & Jacob, A. (2003). PNA-microarrays for hybridisation of unlabelled DNA-samples. Nucleic Acids Res. 31, e119.
  434. Becerra, M., Lombardía, L.J., González-Siso, M.I., Rodriguez-Belmonte, E., Hauser, N.J., & Cerdán, M.E. (2003). Genome-wide analysis of the yeast transcriptome upon heat and cold shock. Comp. Funct. Genom. 4, 366-375.
  435. Zubakov, D., Hoheisel, J.D., Kluxen, F.-W., Brändle, M., Ehring, T., Hentsch, B. & Frohme, M. (2003). Late ischemic preconditioning of the myocardium alters the expression of genes involved in inflammatory response. FEBS Lett. 547, 51-55. 
  436. Fellenberg, K., Vingron, M., Hauser, N.C. & Hoheisel, J.D. (2003). Correspondence analysis with microarray data. Perspectives in Gene Expression (Appasani, K., ed.), Eaton Publishing, Westborough, 307-343.
  437. Kusnezow, W. & Hoheisel, J.D. (2003). Solid Support for Microarray Immunoassays. J. Mol. Recognit.16, 165-176. 
  438. Hoheisel, J.D. (2003). Humangenetik leicht gemacht. Forum DKG 2/03, 61. 
  439. Löhr, M. & Hoheisel, J.D. (2003). DNA-Chip Technologie beim Pankreaskarzinom. Z. Gastroenterol. 41, 623-624.
  440. Lagorce, A., Hauser, N.C., Labourdette, D., Rodriguez, C., Jasson, S., Arroyo, J., Hoheisel, J.D. & Francois, J.-M. (2003). Genome-wide analysis of the response to cell wall damage in the yeast Saccharomyces cerevisiae. J. Biol. Chem. 278, 20345-20357. 
  441. Scheideler, M. & Hoheisel, J.D. (2003). Analyses de microréseaux d'ADN. Bioforum France 1/03, 24-27.
  442. Yin, Z., Wilson, S., Hauser, N.C., Tournu, H., Hoheisel, J.D. & Brown, A.J.P. (2003). Differential effects of high and low glucose signals upon global expression patterns in yeast. Mol. Microbiol. 48, 713-724. 
  443. Mannhaupt, G., Montrone, C., Haase, D., Mewes, W., Aign, V., Hoheisel, J.D., Fartmann, B., Nyakatura, G., Kempken, F., Maier, J. and Schulte, U. (2003). What‘s in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence. Nucleic Acids Res. 31, 1944-1954. 
  444. Kusnezow, W., Jacob, A., Walijew, A., Diehl, F. & Hoheisel, J.D. (2003). Antibody microarrays: an evaluation of production parameters. Proteomics 3, 254-264. 
  445. Würtz, S., Hanke, J., Solinas-Toldo, S. & Hoheisel, J.D. (2003). Genomanalyse und Gendiagnostik. Grundlagen der molekularen Medizin, 2. Auflage (Ganten, D. & Ruckpaul, K., Eds.); Springer Verlag, 391-440.

  446. Kusnezow, W. & Hoheisel, J.D. (2002). Antibody Microarrays: Promises and Problems. BioTechniques 33 (suppl.), 14-23. 
  447. Stjepandic, D., Weinel, C., Hilbert, H., Nelson, K.E., Tümmler, B. & Hoheisel, J.D. (2002). The genome structure of Pseudomonas putida; high-resolution mapping and microarray analysis. Environ. Microbiol. 4, 819-823. 
  448. Nelson, K.E., Weinel, C., Paulsen, I.T., Dodson, R.J., Hilbert, H., Martins Dos Santos, V., Fouts, D.E., Gill, S.R., Pop, M., Holmes, M., Brinkac, L., Beanan, M., DeBoys, R., Daugherty, S., Kolonay, J., Madupu, R., Nelson, W., White, O., Peterson, J., Khouri, H., Hance, I., Chris Lee, P., Holtzapple, E., Scanlan, D., Tran, K., Moazzez, A., Utterback, T., Rizzo, M., Lee, K., Kosack, D., Moestl, D., Wedler, H., Lauber, J., Stjepandic, D., Hoheisel, J.D., Straetz, M., Heim. S., Kiewitz, C., Eisen, J., Timmis, K.N., Düsterhoft, A., Tümmler, B., & Fraser, C.M. (2002). The complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol.4, 799-808. 
  449. Diehl, S., Diehl, F., El-Sayed, N.M., Clayton, C. & Hoheisel, J.D. (2002). Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray. Mol. Biochem. Parasit. 123, 115-123. 
  450. Scheideler, M. & Hoheisel, J.D. (2002). DNA-Microarray Analyses; benefits, promises and problems. Screening 5/02, 22-25. 
  451. Diehl, F., Beckmann, B., Kellner, N., Hauser, N.C., Diehl, S. & Hoheisel, J.D. (2002). Manufacturing DNA-microarrays from unpurified PCR-products. Nucleic Acids Res. 30, e79. 
  452. Lombardía, L.J., Becerra, M., Rodríguez-Belmonte, E., Hauser, N.C. & Cerdán, M.E. (2002) Genome-wide analysis of yeast transcription upon calcium shortage. Cell Calcium 32, 83-91. 
  453. Hauser, N.C., Fellenberg, K. & Rupp, S. (2002). How to Discover Pathogenic Mechanisms - New Evaluation Tools Towards Drug Discovery. Screening 3, 28-31.
  454. Hayes, A., Zhang, N., Wu, J., Butler, P.R., Hauser, N.C., Hoheisel, J.D., Lim, F.L., Sharrocks, A.D., Oliver, S.G. (2002) Hybridisation array technology coupled with chemostat culture: tools to interrogate gene expression in Saccharomyces cerevisiae. Methods 26, 281-290. 
  455. Brazma, A., Robinson, A., Vilo, J., Vingron, M., Hoheisel, J.D., Fellenberg, K. & Muilu, J. (2002). ArrayExpress; establishing a public repository for DNA array-based gene expression data. DNA-Chip Technology; Adv. Biochem. Engineering/Biotechnol. 77, 113-139.
  456. Hoheisel, J.D. (ed.) (2002). DNA-Chip Technology; Adv. Biochem. Engineering/Biotechnol. 77.
  457. Beckers, J., Hoheisel, J.D., Mewes, W., Vingron, M. & Hrabé de Angelis, M. (2002). Molecular phenotyping of mouse mutant resources by RNA expression profiling. Curr. Genomics 3, 121-129. 
  458. Frohme, M., Zolk, O., Maurer, A., Kluxen, F.-W., Hentsch, B., Zubakov, D., Hoheisel, J.D., Zucker, I.H., Pepe, S. & Eschenhagen, T. (2002). Cardiac ankyrin repeat protein, a negative regulator of cardiac gene expression, is augmented in human heart failure. Biochem. Biophys. Res. Commun. 293, 1377-1382. 
  459. Scheideler, M., Schlaich, N.L., Fellenberg, K., Beißbarth, T., Hauser, N., Vingron, M., Slusarenko, A.J. & Hoheisel, J.D. (2002). Monitoring the switch from housekeeping to pathogen defence metabolism in Arabidopsis thaliana. J. Biol. Chem. 277, 10555-10561. 
  460. Fellenberg, K., Hauser, N.C., Brors, B., Hoheisel, J.D. & Vingron, M. (2002). Microarray data warehouse allowing for the statistical analysis of experiment annotations. Bioinformatics 18, 423-433. 
  461. Becerra, M., Lombardía-Ferreira, L.J., Hauser, N.J., Hoheisel, J.D., Tizon, B. & Cerdán, M.E. (2002). The yeast transcriptome in aerobic and hypoxic conditions. Effects of HAP1 ROX1 ROX3 and SRB10 deletions. Mol. Microbiol. 43, 545-555.pdf icon
  462. Tauch, A., Homann, I., Mormann, S., Rüberg, S., Billaut, A., Bathe, B., Brand, S., Brockmann-Gretza, O., Rückert, C., Schischka, N., Wrenger, C., Hoheisel, J.D., Mockel, B., Huthmacher, K., Pfefferle, W., Pühler, A. & Kalinowski, J. (2002). Strategy to sequence the genome of Corynebacterium glutamicum ATCC 13032: use of a cosmid and a bacterial artificial chromosome library. J. Biotechnol. 95, 25-38. 
  463. Heber, S., Stoye, J., Frohme, M., Hoheisel, J.D. & Vingron, M. (2002). Resampling methods in physical mapping. Classification, Automation, and New Media; Studies in Classification, Data Analysis, and Knowledge Organization (Gaul, W. & Ritter, G., eds.), Springer Verlag, 437-444.
  464. Hoheisel, J.D. & Cahill, D. (Editorial) (2002). Proteomics and genomics; catching function in action. Curr Opin. Chem. Biol. 6, 11-12. 
  465. Beier, M. & Hoheisel, J.D. (2002). Use of NPE/NPEOC-protected 5'-phosphoramidites for inverse in situ synthesis of oligonucleotides on DNA-microarrays. J. Biotechnol. 94, 15-22. 

  466. Hoheisel, J.D., Fellenberg, K., Brors, B., Diehl, F., Hauser, N.C. & Vingron, M. (2001). Transkriptionelle Untersuchungen auf DNS-Microarrays; Aspekte der Daten-Evaluation und Interpretation. BIOforum 12/01, 908-910.
  467. Petersohn, A., Brigulla, M., Haas, S., Hoheisel, J.D., Völker, U.& Hecker, M. (2001). Global analysis of the general stress response of Bacillus subtilis. J. Bacteriol. 183, 5617-5631. pdf icon
  468. Hoheisel, J.D., Diehl, F., Scheideler, M., Hauser, N., Aign, V., Matysiak, S. & Beier, M. (2001). Improving DNA-chip technology; chemical aspects. Novel Approaches in Biosensors and Rapid Diagnostic Assays (Liron, Z., Brohmberg, A. and Fisher, M., eds.), Kluwer Academic/Plenum Publishers, London, 165-172. 
  469. Matysiak, S., Reuthner, F. & Hoheisel, J.D. (2001). Automating parallel peptide-synthesis for the production of PNA-library arrays. BioTechniques 31, 896-904. 
  470. Fellenberg, K., Hauser, N.C., Brors, B., Neutzner, A., Hoheisel, J.D. & Vingron, M. (2001). Microarray data analysis by correspondence analysis. Proc. Natl. Acad. Sci. USA 98, 10781-10786. 
  471. Beier, M., Stephan, A. & Hoheisel, J.D. (2001). Synthesis of photolabile 5'-O-phosphoramidites for the production of microarrays of inversely oriented oligonucleotides. Hel. Chim. Acta 84, 2089-2095. 
  472. Hauser, N.C., Fellenberg, K., Rosario, G., Bastuck, S., Hoheisel, J.D. & Perez-Ortin, J.E. (2001). Whole genome analysis of a wine yeast strain. Comp. Funct. Genom. 2, 69-79. 
  473. Frohme, M., Camargo, A., Czink, C., Matsukuma, A.Y., Simpson, A.J.G., Hoheisel, J.D. & Verjovski-Almeida, S. (2001). Directed gap closure in large scale sequencing projects. Genome Res. 11, 901-903. 
  474. Matysiak, S., Reuthner, F. & Hoheisel, J.D. (2001). New developments in Spot-synthesis of PNA-arrays. Innovation and Perspectives in Solid Phase Synthesis and Combinatorial Chemical Libraries (Epton, R., ed.), Mayflower Worldwide, Birmingham, 71-74.
  475. Hoheisel, J.D. & Conway, P.J. (eds.) (2001). Analytical Biotechnology. Curr Opin. Biotechnol. 12 (1). 
  476. Aign, V., Schulte, U. & Hoheisel, J.D. (2001). Hybridisation mapping of Neurospora crassa linkage groups II and V. Genetics 157, 1015-1020. 
  477. Diehl, F., Grahlmann, S., Beier, M. & Hoheisel, J.D. (2001). Manufacturing DNA-microarrays of high spot homogeneity and reduced background signal. Nucleic Acids Res. 29, e38. 
  478. Shen, H.H., Huang, A.-M., Hoheisel, J.D. & Tsai, S.-F. (2001). Identification and characterization of a SET/NAP protein encoded by a brain-specific gene, MB20. Genomics 71, 21–33. 
  479. Hoheisel, J.D. (2001). DNA in me that‘s not my DNA. Trends Biotechnol. 19, 155-156.

  480. Beißbarth, T., Fellenberg, K., Brors, B., Arribas-Prat, R., Boer, J., Hauser, N.C., Scheideler, M., Hoheisel, J.D., Schütz, G., Poustka, A. & Vingron, M. (2000). Comparison and quality measures of DNA array hybridisation data. Bioinformatics16, 1014-1022. 
  481. Tümmler, B., Kiewitz, C., Weinel, C., Hoheisel, J.D., Düsterhöft, A., Hilbert, H., Moore, E., Strätz, M., Timmis, K.N., Nelson, K.E. & Fraser, C.M. (2000). Sequenzierung und Funktionsanalyse des Pseudomonas putida KT2440 Genoms: Methodik und Ressourcen. Biologische Sicherheit (Hartmann, A, ed.), Forschungszentrum Jülich (ISBN 3-89336-255-X), 251-257.
  482. Hoheisel, J.D. (2000). Das Humangenomprojekt. Humangenetisches Symposium 29, 11-16.
  483. Heber, S., Stoye, J., Frohme, M., Hoheisel, J.D. & Vingron, M. (2000). Contig selection in physical mapping. J. Comput. Biol. 7, 395-408. pdf icon
  484. Campbell, H.D., Fountain, S., Young, I.G., Weitz, S., Lichter, P. & Hoheisel, J.D. (2000). Fliih, the murine homologue of the Drosophila melanogaster flightless-I gene: genomic structure, chromosomal mapping and overlap with Llglh. DNA Sequence 11, 29-40.
  485. Heber, S., Hoheisel, J.D. & Vingron, M. (2000). Application of bootstrap-techniques to physical mapping. Genomics 69, 235-241. 
  486. Heber, S., Stoye, J., Hoheisel, J.D. & Vingron, M. (2000). Contig selection in physical mapping. Proc. Fourth Ann. Internat. Conf. Comput. Mol. Biol. (RECOMB 2000), 155-164.
  487. Hoheisel, J.D. (2000). Editorial on DNA-Chips. BIOforum12/00, 825. 
  488. Frohme, M., Camargo; A.A., Heber, S., Czink, C., Simpson, A.J.D., Hoheisel, J.D. & de Souza, A.P. (2000). Mapping analysis of the Xylella fastidiosa genome. Nucleic Acids Res. 28, 3100-3104. 
  489. Frohme, M., Scharm, B., Delius, H., Knecht, R. & Hoheisel, J.D. (2000). Use of representational difference analysis and cDNA-arrays for transcriptional profiling of tumour tissue. Ann. N.Y. Acad. Sci. 910, 85-104.
  490. Frohme, M., Hauser, N., Scheideler, M., Diehl, F., Beier, M., Würtz, S. & Hoheisel, J.D. (2000). Chips, arrays and other hybridisation based techniques for genome and transcriptome characterisation. Molecular Pathogenesis of Pancreatic Cancer (Gress, T., ed.), IOS Press, Amsterdam, 88-94.
  491. Hoheisel, J.D. & Vingron, M. (2000). Transcriptional profiling: is it worth the money? Res. Microbiol. 151, 113-119. 
  492. Simpson, A.J.G., et al., Hoheisel, J.D., et al. & Setubal, J.C. (2000). The genome sequence of the plant pathogen Xylella fastidiosa. Nature 406, 151-157. 
  493. Hoheisel, J.D. & Beier, M. (2000). DNS-Chips/elektronische Chips, grundverschieden und doch ähnlich. Dechema Tätigkeitsbericht.1999, 8-11.
  494. Hoheisel, J.D. (2000). ... and counting: DNA-microarrays. Proceedings Int. Conf. Genomics and Proteomics: Functional and Computational Aspects (Suhai, S., ed.), Plenum Publishing, New York, 1-3.
  495. Wambutt, R. et al., Hoheisel, J.D. et al. & Bevan, M. (2000). Progress in Arabidopsis genome sequencing and functional genomics. J. Biotechnol. 78, 281-292. 
  496. Beier, M. & Hoheisel, J.D. (2000). Production by quantitative photolithographic synthesis of individually quality-checked DNA microarrays. Nucleic Acids Res. 28, e11. 
  497. Beier, M., Matysiak, S., Hauser, N., Scheideler, M., Würtz, S., Fellenberg, K., Vingron, M. & Hoheisel, J.D. (2000). DNA microchips; transcriptional profiling and beyond. Chimia 54, 29-30.

  498. Hanke, J. & Hoheisel, J.D. (1999). Construction and screening of cosmid libraries. The Nucleic Acids Protocols Handbook - Methods in Molecular Biology (Rapley, R., ed.), Humana Press, Totowa, 405-414.
  499. The European Union Arabidopsis Genome Sequencing Consortium (1999). Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature 402, 769-777. 
  500. Hoheisel, J.D. (1999). DNS-Chips - Technologie mit Zukunft. Biotechnologie-Agentur Baden-Württemberg 4, 6.
  501. Li, Z., Rossi, E.A., Hoheisel, J.D., Kalderon, D. & Rubin, C.S. (1999). Generation of a novel A kinase anchor protein and a myristoylated alanine-rich C kinase substrate-like analog from a single gene. J. Biol. Chem. 274, 27191-27200. 
  502. Wallrapp, C., Müller-Pillasch, F., Micha, A., Wenger, C., Geng, M., Solinas-Toldo, S., Lichter, P., Frohme, M., Hoheisel, J.D., Adler, G. & Gress, T.M. (1999). Strategies for the detection of disease genes in pancreatic cancer. Ann. N.Y. Acad. Sci. 880, 122-146.
  503. Wallrapp, C., Müller-Pillasch, F., Micha, A., Wenger, C., Geng, M., Solinas-Toldo, S., Lichter, P., Frohme, M., Hoheisel, J.D., Adler, G. & Gress, T.M. (1999). Novel technologies for detection of genomic and transcriptional alterations in pancreatic cancer. Ann. Oncology 10, suppl. 4, S64-S68. 
  504. Geng, M., Wallrapp, C., Müller-Pillasch, F., Frohme, M., Hoheisel, J.D. & Gress, T. (1999). Isolation of differentially expressed genes by combining representational difference analysis (RDA) and cDNA library arrays. Expression Genetics: Accelerated and High-Throughput Methods Book (McClelland, M. & Pardee, A., eds.), Biotechniques Books, Natick, 145-153.
  505. Matysiak, S., Hauser, N.C., Würtz, S. & Hoheisel, J.D. (1999). Improved solid supports and spacer/linker systems for the synthesis of spatially addressable PNA-libraries. Nucleosides & Nucleotides 18, 1289-1291.
  506. Beier, M. & Hoheisel, J.D. (1999). New developments in light-controlled synthesis of DNA-arrays. Nucleosides & Nucleotides 18, 1301-1304.
  507. Weiler, J., Matysiak, S., Gausepohl, H. & Hoheisel, J.D. (1999). New developments in hybridisation based DNA screening on oligomer arrays. Solid Phase Synthesis - Peptides, Proteins and Nucleic Acids (Epton, R., ed.), Mayflower Worldwide, 93-96.
  508. Beier, M. & Hoheisel, J.D. (1999). Versatile derivatisation of solid support media for covalent bonding on DNA-microchips. Nucleic Acids Res. 27, 1970-1977. 
  509. Matysiak, S., Würtz, S., Hauser, N., Gausepohl, H. & Hoheisel, J.D. (1999). PNA-arrays for nucleic acid detection. Peptide Nucleic Acids: Protocols and Applications (Nielsen, P. & Egholm, M., eds.), Horizon Scientific Press, Wymondham, 119-128.
  510. Hoheisel, J.D. (1999). DNS-Chip Technologie - eine Herausforderung. med. genetik 11, 4-5.
  511. Vingron, M. & Hoheisel, J.D. (1999). Computational aspects of expression data analysis. J. Mol. Med. 77, 3-7.

  512. Craig, A. & Hoheisel, J.D. (eds.) (1998). Methods in Microbiology 28 - Automation. Academic Press.
  513. Hauser, N.C., Scheideler, M., Matysiak, S., Vingron, S. & Hoheisel, J.D. (1998). DNA arrays for transcriptional profiling. Methods in Microbiology 28 - Automation (Craig, A. & Hoheisel, J.D., eds.), Academic Press, 193-204.
  514. Persson, K., Åslund, L., Grahn, B., Hanke, J. & Heby, O. (1998). Characterization of the Trypanosoma cruzi S-adenosylmethionine decarboxylase gene and the encoded enzyme. Biochem. J. 333, 527-537. pdf icon
  515. Geng, M., Wallrapp, C., Müller-Pillasch, F., Frohme, M., Hoheisel, J.D. & Gress, T. (1998). Isolation of differentially expressed genes by combining representational difference analysis (RDA) and cDNA library arrays. BioTechnique 25, 434-438. 
  516. Hoheisel, J.D. & Vingron, M. (1998). DNS-Chip Technologie. BioSpektrum 6, 17-20. (reprinted 1999 in Biochemica 3, 31-35.)
  517. Andersson, B., Åslund, L., Hoheisel, J.D. & Pettersson, U. (1998). 93.4 kb of complete sequence from chromosome 3 of Trypanosoma cruzi containing a strand switch region. Genome Res. 8, 809-816. 
  518. Hauser, N.C., Vingron, M., Scheideler, M., Krems, B., Hellmuth, K., Entian, K.-D. & Hoheisel, J.D. (1998). Transcriptional profiling on all open reading frames of Saccharomyces cerevisiae. Yeast 14, 1209-1221. 
  519. Chan, H.Y.E., Zhang, Y., Hoheisel, J.D. & O'Kane, C.J. (1998) Identification and characterisation of the gene for Drosophila L3 ribosomal protein. Gene 212, 119-125. 
  520. Hauser, N., Scheideler, M. & Hoheisel, J.D. (1998). DNS-Chip Technologie zur Untersuchung von Genaktivität. Krebsforschung heute 98 (Stamatiadis-Smidt, M.A., Ed.); Steinkopff Verlag, 190-193.
  521. Gausepohl, H., Weiler, J., Schwarz, S., Fitzpattrick, R. & Hoheisel, J.D. (1998). Synthesis of large PNA arrays on membranes using the SPOT method. Peptides 1996 - Proceedings of the 24th Symposium of the European Peptide Society (Ramage, R., and Epton, R., eds.), Mayflower Scientific Ltd., 411-412.
  522. Scholler, P., Heber, S. & Hoheisel, J.D. (1998). Optimisation and automation of fluorescence-based DNA hybridisation for high-throughput clone mapping. Electrophoresis 19, 504-508.
  523. Hanke, J., Frohme, M., Laurent, J.P., Swindle, J. & Hoheisel, J.D. (1998). Hybridisation mapping of Trypanosoma cruzi chromosomes III and IV. Electrophoresis 19, 482-485.
  524. Frohme, M., Hanke, J., Åslund, L., Pettersson, U. & Hoheisel, J.D. (1998). Selective generation of chromosomal cosmid libraries within the Trypanosoma cruzi genome project. Electrophoresis 19, 478-481.

  525. Krebber, H., Bastians, H., Hoheisel, J.D., Lichter, P., Ponstingl, H. & Joos, S. (1997). Localisation of the gene encoding the Ran-binding protein RanBP2 to human chromosome 2q11-13 by fluorescence in situ hybridisation. Genomics 43, 247-248. 
  526. Weiler, J. & Hoheisel, J.D. (1997). Picomole synthesis of high quality oligonucleotide primers in combination with the preparation of oligonucleotide arrays. Nucl. & Nucl. 16, 1793-1796.
  527. Hoheisel, J.D. (1997). Oligomer chip technology. Trends Biotechnol.15, 465-469. 
  528. Weiler, J., Hauser, N. & Hoheisel, J.D. (1997). New developments in oligomer array technologies. Nucl. & Nucl. 16, 777-780.
  529. Christodoulou, S., Lockyer, A.E., Foster, J.M., Hoheisel, J.D. & Roberts, D.B. (1997). Nucleotide sequence of a Drosophila melanogaster cDNA encoding a clanexin homologue. Gene 191, 143-148. 
  530. Weiler, J., Gausepohl, H., Hauser, N., Jensen, O.N. & Hoheisel, J.D. (1997). Hybridisation based DNA screening on peptide nucleic acid (PNA) oligonucleotide arrays. Nucleic Acids Res. 25, 2792-2799. 
  531. Hanke, J., Solinas-Toldo, S. & Hoheisel, J.D. (1997). Genomanalyse und Gendiagnostik. Handbuch der molekularen Medizin, Band 1 (Ganten, D. & Ruckpaul, K., Eds.); Springer Verlag, pp. 51-91.
  532. Ohkura, H., Török, T., Tick, G., Hoheisel, J.D., Kiss, I. & Glover, D.M. (1997). Mutation of a gene for a Drosophila kinesin like protein, Klp38B, leads to failure of cytokinesis. J. Cell Science 110, 945-954. 
  533. Bastians, H., Krebber, H., Hoheisel, J.D., Ohl, S., Lichter, P., Ponstingl, H. & Joos, S. (1997). Assignment of the human serine/threonine protein phosphatase 4 gene (PPP4C) to chromosome 16p11.2-12.1 by fluorescence in situ hybridisation. Genomics 42, 181-182. 
  534. Campbell, H.D., Fountain, S., Young, I.G., Claudianosll, C., Hoheisel, J.D., Chen, K.-S. & Lupski, J.R. (1997). Genomic structure, evolution and expression of human fli, a gelsolin and leucine-rich-repeat family member: linkage to HUGL. Genomics 42, 46-54. 
  535. Johnston, M., Hillier, L., Riles, L., Albermann, K., André, B., Ansorge, W., Benes, V., Brückner, M., Delius, H., Dubois, E., Düsterhöft, A., Entian, K.-D., Floeth, M., Goffeau, A., Hebling, U., Heumann, K., Heuss-Neitzel, D., Hilbert, H., Hilger, F., Kleine, K., Kötter, P., Louis, E.J., Messenguy, F., Mewes, H.W., Miosga, T., Möstl, D., Müller-Auer, S., Nentwich, U., Obermaier, B., Piravandi, E., Pohl, T.M., Portetelle, D., Purnelle, B., Rechmann, S., Rieger, M., Rinke, M., Rose, M., Scharfe, M., Scherens, B., Scholler, P., Schwager, C., Schwarz, S., Underwood, A. P., Urrestarazu, L. A., Vandenbol, M., Verhasselt, P., Vierendeels, F., Voet, M., Volckaert, G., Voss, H., Wambutt, R., Wedler, E., Wedler, H., Zimmermann, F. K., Zollner, A., Hani, J. & Hoheisel, J.D. (1997). The complete sequence of Saccharomyces cerevisiae chromosome XII. Nature 387 (suppl.), 87-90.
  536. Jacq, C., et al., Hoheisel, J.D., et al. (1997). The nucleotide sequence of chromosome IV of Saccharomyces cerevisiae. Nature 387 (suppl.), 75-78.
  537. Goffeau, A. et al., Hoheisel, J.D., et al. (1997) Yeast Genome Directory. Nature 387 (suppl.), 5.
  538. Gress, T.M., Wallrapp, C., Frohme, M., Müller-Pillasch, F., Lacher, U., Friess, H., Büchler, M., Adler, G. & Hoheisel, J.D. (1997). Identification of genes with specific expression in pancreatic cancer by use of cDNA representational difference analysis. Genes Chrom. Cancer 19, 97-103. 
  539. Bastians, H., Krebber, H., Vetrie, D., Hoheisel, J.D., Lichter, P., Ponstingl, H. & Joos, S. (1997). Localisation of the novel serine/threonine protein phosphatase 6 gene (PPP6C) to human chromosome Xq22.3. Genomics 41, 296-297. 
  540. Werner, E., Holder, A.A. & Hoheisel, J.D. (1997). Growth and storage of YAC-clones in Hogness Freezing Medium. Nucleic Acids Res. 25, 1467-1468. 
  541. The Trypanosoma cruzi genome consortium: Zingales, B., Rondinelli, E., Degrave, W., da Silveira, J.F., Levin, M., Le Paslier, D., Modabber, F., Dobrokhotov, B., Swindle, J., Kelly, J. M., Åslund, L., Hoheisel, J.D., Ruiz, A.M., Cazzulo, J.J., Pettersson, U. & Frasch, A.C. (1997). The Trypanosoma cruzi genome initiative. Parasitol. Today 13, 16-21. pdf icon

  542. Weiler, J. & Hoheisel, J.D. (1996). Combining the preparation of oligonucleotide arrays and synthesis of high quality primers. Anal. Biochem. 243, 218-227. pdf icon
  543. Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H. & Oliver, S.G. (1996). Life with 6000 genes. Science 274, 546-567. pdf icon
  544. Scholler, P., Benes, V., Voss, H., Ansorge, W. & Hoheisel, J.D. (1996). Sequencing 39,350 bp of Saccharomyces cerevisiae chromosome XII utilising ordered shotgun libraries. DNA Sequence 6, 257-262.
  545. Hanke, J., Sánchez, D.O., Henriksson, J., Åslund, L., Pettersson, U., Frasch, A.C.C. & Hoheisel, J.D. (1996). Towards the mapping of the Trypanosoma cruzi genome; analyses on a representative cosmid library. BioTechniques 21, 686-693. pdf icon
  546. Hoheisel, J.D., Maier, E., Mott, R. & Lehrach, H. (1996). Integrated genome mapping by hybridization techniques. Analysis of Non-Mammalian Genomes - A Practical Guide (Birren, B. & Lai, E., Eds.), Academic Press, pp. 319-346.
  547. Hoheisel, J.D. (1996). Sequence-independent and linear variation of oligonucleotide DNA-binding stabilities. Nucleic Acids Res. 24, 430-432. pdf icon

  548. Scholler, P., Karger, A.E., Meier-Ewert, S., Lehrach, H., Delius, H. & Hoheisel, J.D. (1995). Fine-mapping of shotgun template-libraries; an efficient strategy for the systematic sequencing of genomic DNA. Nucleic Acids Res. 23, 3842-3849. pdf icon
  549. Lin, W.-H., Huang, L.-H., Yeh, J.-Y., Hoheisel, J.D., Lehrach, H., Sun, Y.H. & Tsai, S.-H. (1995). A Drosophila GATA transcription factor is expressed in multiple tissues in the developing embryos. J. Biol. Chem. 270, 25150-25158. pdf icon
  550. Stephen W. Scherer & Hoheisel, J.D. (1995). Genome analysis. Mol. Med. Today 1, 258-259. pdf icon
  551. Cornell, M.J., William, T.A., Coates, D., Corvol, R., Soubrier, F., Hoheisel, J.D., Lehrach, H. & Isaac, R.E. (1995). Cloning and expression of an evolutionary conserved single-domain angiotensin converting enzyme from Drosophila melanogaster. J. Biol. Chem. 270, 13613-13619. pdf icon
  552. Scholler, P., Schwarz, S. & Hoheisel, J.D. (1995). High-resolution cosmid mapping of the left arm of Saccharomyces cerevisiae chromosome XII; a first step towards an ordered sequencing approach. Yeast 11, 659-666. pdf icon
  553. Chen, K.-S., Nguyen, D., Hoheisel, J.D., Young, I.G., Miklos, G.L.G., Greenberg, F., Shaffer, L.G., Campbell, H.D. & Lupski, J.R. (1995). The Drosophila melanogaster flightless-I gene (fliI) human homologue maps within the Smith-Magenis microdeletion critical region in 17p11.2. Am. J. Hum. Genet. 56, 175-182.

  554. Hoheisel, J.D. (1994). Creation of a rare-cutter multiple-cloning site. BioTechniques 17, 456-460.
  555. Hoheisel, J.D., Ross, M.T., Zehetner, G. & Lehrach, H. (1994). Relational genome analysis using reference libraries and hybridisation fingerprinting. J. Biotechnol. 35, 121-134. pdf icon
  556. Hoheisel, J.D. (1994). Application of hybridisation techniques to genome mapping and sequencing. Trends Genet. 10, 79-83. pdf icon
  557. Maier, E., Hoheisel, J.D. & Lehrach, H. (1994). Ordered clone libraries as high resolution mapping tools. Proceedings of the 6th European Congress on Biotechnology (Alberghina, L., Frontali, L. & Sensi, P., eds.), Elsevier, pp. 191-194.

           1993    (Publications of Jörg D. Hoheisel prior to joining DKFZ)
  558. Hoheisel, J.D., Maier, E., Meier-Ewert, S. & Lehrach, H. (1993). Relational genome analysis based on hybridisation techniques. Ann. Biol. Clin. 50, 827-829.
  559. Hoheisel, J.D. & Lehrach, H. (1993). Use of reference libraries and hybridisation fingerprinting for relational genome analysis. FEBS Lett. 325, 118-122. pdf icon
  560. Mott, R., Grigoriev, A., Maier, E., Hoheisel, J.D. & Lehrach, H. (1993). Algorithms and software tools for ordering clone libraries; application to the mapping of the genome of Schizosaccharomyces pombe. Nucleic Acids Res. 21, 1965-1974. pdf icon
  561. Hoheisel, J.D., Maier, E., Mott, R., McCarthy, L., Grigoriev, A.V., Schalkwyk, L.C., Nizetic, D., Francis, F. & Lehrach, H. (1993). High-resolution cosmid and P1 maps spanning the 14-Mbp genome of the fission yeast Schizosaccharomyces pombe. Cell 73, 109-120. pdf icon
  562. Hoheisel, J.D. (1993). On the activities of Escherichia coli Exonuclease III. Anal. Biochem. 209, 238-246. pdf icon

  563. Gress, T.M., Hoheisel, J.D., Lennon, G.G., Zehetner, G. & Lehrach, H. (1992). Hybridisation fingerprinting of high density cDNA-library arrays with cDNA pools derived from whole tissues. Mamm. Genomes 3, 609-619. pdf icon
  564. Maier, E., Hoheisel, J.D., McCarthy, L., Mott, R., Grigoriev, A.V., Monaco, A.P., Larin, Z. & Lehrach, H. (1992). Yeast artificial chromosome clones completely spanning the genome of Schizosaccharomyces pombe. Nature Genet. 1, 273-277. pdf icon
  565. Ross, M.T., Hoheisel, J.D., Monaco, A.P., Larin, Z., Zehetner, G. & Lehrach, H. (1992). High-density gridded YAC filters: their potential as genome mapping tools. Techniques for the Analysis of Complex Genomes (Anand, R. ed.), Academic Press, pp. 137-154.

  566. Freese, S., Hoheisel, J.D., Lehrach, H. & Wright, G. (1991). N2-substituted-2'-deoxyguanosine 5'-triphosphates as substrates for E. coli DNA polymerase I. Nucleosides & Nucleotides 10, 1507-1524. pdf icon
  567. Hoheisel, J.D., Lennon, G.G., Zehetner, G. & Lehrach, H. (1991). Use of high coverage reference libraries of Drosophila melanogaster for relational data analysis; a step towards mapping and sequencing of the genome. J. Mol. Biol. 220, 903-914. pdf icon
  568. Hoheisel, J.D., Drmanac, R., Larin, Z., Lennon, G., Monaco, A.P., Nizetic, D., Ross, M., Zehetner, G. & Lehrach, H. (1991). Use of high coverage libraries for an integrated analysis of genomic DNA. Genome Analysis: From Sequence to Function (Collins, J. & Driesel, A.J. eds.), Advances Mol. Gen. 4, Hüthig Buch Verlag, pp. 125-132.

  569. Lehrach, H., Drmanac, R., Hoheisel, J.D., Larin, Z., Lennon, G., Monaco, A.P., Nizetic, D., Zehetner, G. & Poustka, A. (1990). Hybridisation fingerprinting in genome mapping and sequencing. Genome Analysis Volume 1: Genetic and Physical Mapping (Davies, K.E. & Tilghman, S. eds.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY), pp. 39-81.
  570. Hoheisel, J.D. & Lehrach, H. (1990). Quantitative measurements on the duplex stability of 2.6-diaminopurine and 5-chloro-uracil nucleotides using enzymatically synthesized oligomers. FEBS Lett. 274, 103-106. pdf icon
  571. Hoheisel, J.D. (1990). Extension of a pUC18-like polylinker by the octanucleotide recognition sites of NotI, FseI, SfiI and PacI. Trends Genet. 6, 346. pdf icon
  572. Hoheisel, J.D., Craig, A.G. & Lehrach, H. (1990). Effect of 5-bromo and 5-methyl deoxycytosine on duplex stability and discrimination of the NotI octadeoxynucleotide; quantitative measurements using thin-layer chromatography. J. Biol. Chem. 265, 16656-16660. pdf icon
  573. Craig, A., Nizetic, D., Hoheisel, J.D., Zehetner, G. & Lehrach, H. (1990). Ordering of cosmid clones covering the Herpes Simplex Virus Type I (HSV-I) genome: a test case for fingerprinting by hybridisation. Nucleic Acids Res. 18, 2653-2660. pdf icon

  574. Hoheisel, J.D., Nizetic, D. & Lehrach, H. (1989). Control of partial digestion combining the enzymes Dam methylase and MboI. Nucleic Acids Res. 17, 4571-4582. pdf icon
  575. Craig, A., Nizetic, D., Hoheisel, J.D., Monaco, A.P., Zehetner, G., Lennon, G., Young, B. & Lehrach, H. (1989). Long-range ordering of clones by probe fingerprinting. Polymerase Chain Reaction (Erlich, H.A., Gibbs, R.A. & Kazazian, H.H. eds.), Curr. Comm. Mol. Biol., Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY), pp. 205-210.
  576. Hoheisel, J.D. (1989). Ultrafast Microprep protocol for large-number preparations of recombinant plasmids and cosmids. Technique 1, 21-27. pdf icon
  577. Hoheisel, J.D. (1989). A cassette with seven unique restriction sites, including octanucleotide sequences: extension of multiple-cloning-site plasmids. Gene 80, 151-154. pdf icon

  578. Hoheisel, J.D. (1988). Untersuchung verschiedener, topologisch induzierter DNS-Sekundärstrukturen. (Thesis) Hartung-Gorre Verlag, Konstanz, ISBN 3-89191-177-7.
  579. Hoheisel, J.D. & Pohl, F.M. (1987). Searching for potential Z-DNA in genomic Escherichia coli DNA. J. Mol. Biol. 193, 447-464. pdf icon
  580. Hoheisel, J.D. & Pohl, F.M. (1986). Simplified preparation of unidirectional deletion clones. Nucleic Acids Res. 14, 3605. pdf icon

For further information, please, contact Jörg D. Hoheisel or the DKFZ Innovation Management Office.

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