<!-- DTD for EXPERIMENT ANNOTATIONS -->

<!-- additional fixing: attribute nvalue always takes one valid float -->

<!-- Special characters
cannot be used within element names or enlisted attribute values
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the following (perl syntax):

  $line=~s/\+/_.PLUS._/g;
  $line=~s/\-/_.DASH._/g;
  $line=~s/\(/_.BRACKET_OPEN._/g;
  $line=~s/\)/_.BRACKET_CLOSE._/g;
  $line=~s/\&/_.AMP._/g;
  $line=~s/\:/_.COLON._/g;
  $line=~s/\*/_.STAR._/g;
  $line=~s/\</_.ST._/g;
  $line=~s/\>/_.GT._/g;
  $line=~s/'/_.APOS._/g;
  $line=~s/\"/_.QUOT._/g;
  $line=~s/\//_.SLASH._/g;
  $line=~s/\/_.BACKSLASH._/g;
  $line=~s/\?/_.QUESTIONM._/g;
  $line=~s/\%/_.PERCENT._/g;
  $line=~s/\;/_.SEMICOLON._/g;

The units are implemented as fixed values of attributes 'unit'. Here 
special characters are not substituted but given as ordinary entity 
references. 
-->

<!ELEMENT experiment_annotations (
  common_annotations,
  organism_specific_annotations)>

<!ATTLIST experiment_annotations
              measurement_or_imageID CDATA #REQUIRED>

 <!ELEMENT common_annotations (
   array,
   hybridisation,
   sample,
   submission)>

 <!ELEMENT organism_specific_annotations (
   parental_information,
   animal_in_experiment,
   culture_conditions,
   experimental_settings)>

  <!ELEMENT array (
     array_source...1,
     array_series...2,
     array_individual...3,
     array_support...4,
     array_support_width...67,
     array_support_length...68,
     array_surface_chemistry...41,
     support_manufacturer...42,
     Hybond_support_brand...43,
     Pall_support_brand...44,
     Corning_support_brand...45,
     TeleChem_support_brand...46,
     spotted_material...5,
     spotted_material_property...69,
     number_of_elements_on_array__.BRACKET_OPEN._without_duplicates_.BRACKET_CLOSE._...70,
     elements_spotted_as...71,
     spotted_material_purification...47,
     spotting_buffer...48,
     spotting_robot...49,
     spotting_pins...50,
     relative_humidity...51,
     relative_humidity...52,
     temperature...53,
     temperature...54,
     postprocessing...55,
     uv_crosslink_applicable...77,
     uv_crosslink_energy...78,
     readfile...6,
     array_hybridisation...7)>

  <!ELEMENT hybridisation (
    RNA_preparation,
    labeling,
    hybridisation_conditions,
    stringency_wash,
    detection)>

  <!ELEMENT sample (
     amount_of_RNA...11,
     amount_of_cDNA...40,
     enzym...12,
     priming...13,
     nucleotide...14,
     nucleotide_removal...56,
     label...15,
     days_from_calibration_date_applicable...66,
     days_from_calibration_date...38,
     label_incorporation_rate...16,
     total_activity...17,
     buffer...18,
     prehybridization_without_target...57,
     competitors...19,
     hybridisation_device...75,
     hybridisation_instrument...76,
     hybridisation_temp...20,
     buffer_volume...21,
     coverslip_used...58,
     coverslip_size...59,
     hybridisation_length...22,
     wash_buffer...23,
     times...24,
     wash_length...25,
     temperature...26,
     exposure_time_applicable...60,
     exposure_time...27,
     measuring_device...28,
     scanning_software...72,
     spacial_resolution...73,
     pixelsize...61,
     PMT_setting_applicable...62,
     PMT_setting...63,
     laser_power_setting_applicable...64,
     laser_power_setting...65,
     imaging_software...29,
     background_correction...30,
     spot_detection...31,
     spot_dimension__.BRACKET_OPEN._diameter_.BRACKET_CLOSE._...74,
     spot_size...32,
     intensity_measurement...33,
     organism...34)>

  <!ELEMENT submission (
     buffer...18,
     prehybridization_without_target...57,
     competitors...19,
     hybridisation_device...75,
     hybridisation_instrument...76,
     hybridisation_temp...20,
     buffer_volume...21,
     coverslip_used...58,
     coverslip_size...59,
     hybridisation_length...22,
     wash_buffer...23,
     times...24,
     wash_length...25,
     temperature...26,
     exposure_time_applicable...60,
     exposure_time...27,
     measuring_device...28,
     scanning_software...72,
     spacial_resolution...73,
     pixelsize...61,
     PMT_setting_applicable...62,
     PMT_setting...63,
     laser_power_setting_applicable...64,
     laser_power_setting...65,
     imaging_software...29,
     background_correction...30,
     spot_detection...31,
     spot_dimension__.BRACKET_OPEN._diameter_.BRACKET_CLOSE._...74,
     spot_size...32,
     intensity_measurement...33,
     organism...34,
     date_of_entry_day...35,
     date_of_entry_month...36,
     date_of_entry_year...37,
     experimentator...39)>

  <!ELEMENT parental_information (
    father_of_animal_in_experiment,
    mother_of_animal_in_experiment,
    mating_yield)>

  <!ELEMENT animal_in_experiment (
    basic_information,
    strain_or_phenotype)>

  <!ELEMENT culture_conditions (
    preparation,
    feeding)>

  <!ELEMENT experimental_settings (
    basic_tissue_information,
    experimental_category)>

   <!ELEMENT RNA_preparation (
     material_source...8,
     preparation_of_total_RNA...9,
     preparation_of_PolyA_.PLUS._...10)>

   <!ELEMENT labeling (
     amount_of_RNA...11,
     amount_of_cDNA...40,
     enzym...12,
     priming...13,
     nucleotide...14,
     nucleotide_removal...56,
     label...15,
     days_from_calibration_date_applicable...66,
     days_from_calibration_date...38,
     label_incorporation_rate...16,
     total_activity...17)>

   <!ELEMENT hybridisation_conditions (
     buffer...18,
     prehybridization_without_target...57,
     competitors...19,
     hybridisation_device...75,
     hybridisation_instrument...76,
     hybridisation_temp...20,
     buffer_volume...21,
     coverslip_used...58,
     coverslip_size...59,
     hybridisation_length...22)>

   <!ELEMENT stringency_wash (
     wash_buffer...23,
     times...24,
     wash_length...25,
     temperature...26)>

   <!ELEMENT detection (
     exposure_time_applicable...60,
     exposure_time...27,
     measuring_device...28,
     scanning_software...72,
     spacial_resolution...73,
     pixelsize...61,
     PMT_setting_applicable...62,
     PMT_setting...63,
     laser_power_setting_applicable...64,
     laser_power_setting...65,
     imaging_software...29,
     background_correction...30,
     spot_detection...31,
     spot_dimension__.BRACKET_OPEN._diameter_.BRACKET_CLOSE._...74,
     spot_size...32,
     intensity_measurement...33)>

   <!ELEMENT father_of_animal_in_experiment (
     strain_definition...9035)>

   <!ELEMENT mother_of_animal_in_experiment (
     strain_definition...9036)>

   <!ELEMENT mating_yield (
     strain_definition...9037)>

   <!ELEMENT basic_information (
     type_definition...9038,
     strain_definition...9039,
     sex_of_experiment_animal...9040)>

   <!ELEMENT strain_or_phenotype (
     wildtype_ID...9041,
     mutant_ID...9042,
     RNAi_ID...9043,
     developmental_stage...9044)>

   <!ELEMENT preparation (
     time_of_preparation...9045,
     preparator...9046)>

   <!ELEMENT feeding (
     fed_last_24_hours...9047)>

   <!ELEMENT basic_tissue_information (
     fed_last_24_hours...9048,
     embryonic...9049,
     posterior_planula...9050,
     anterior_planula...9051,
     tentacles...9052,
     head...9053,
     body_column...9054,
     stolones...9055,
     stolone_tip...9056,
     stolone_mat...9057)>

   <!ELEMENT experimental_category (
     tissue_specificity...9058,
     development...9059,
     RNAi_phenotype...9060,
     strain_specificity...9061,
     Induction_or_treatment...9062,
     regeneration...9063)>

    <!ELEMENT array_source...1 EMPTY>
    <!ATTLIST array_source...1 cvalue (
      self_made...10 |
      genome_systems...11 |
      clontech...12 |
      research_genetics...13 ) #REQUIRED>

     <!ELEMENT array_series...2 EMPTY>
     <!ATTLIST array_series...2
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "" >

     <!ELEMENT array_individual...3 EMPTY>
     <!ATTLIST array_individual...3
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "" >

     <!ELEMENT array_support...4 EMPTY>
     <!ATTLIST array_support...4 cvalue (
      nylon...14 |
      polypropylene...15 |
      glass...16 ) #REQUIRED>

     <!ELEMENT array_support_width...67 EMPTY>
     <!ATTLIST array_support_width...67
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "mm" >

     <!ELEMENT array_support_length...68 EMPTY>
     <!ATTLIST array_support_length...68
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "mm" >

     <!ELEMENT array_surface_chemistry...41 EMPTY>
     <!ATTLIST array_surface_chemistry...41 cvalue (
      unknown_positive_charge...117 |
      poly_L_lysine...118 |
      aldehyde...119 |
      aminosilane...120 ) #REQUIRED>

     <!ELEMENT support_manufacturer...42 EMPTY>
     <!ATTLIST support_manufacturer...42 cvalue (
      Hybond...121 |
      Pall...122 |
      TeleChem...123 |
      Corning...124 |
      diehl...125 |
      stephan...126 ) #REQUIRED>

     <!ELEMENT Hybond_support_brand...43 EMPTY>
     <!ATTLIST Hybond_support_brand...43 cvalue (
      non_Hybond...127 |
      N_.PLUS._...128 ) #REQUIRED>

     <!ELEMENT Pall_support_brand...44 EMPTY>
     <!ATTLIST Pall_support_brand...44 cvalue (
      non_Pall...129 |
      Biodyne_B...130 |
      polypropylene...223 ) #REQUIRED>

     <!ELEMENT Corning_support_brand...45 EMPTY>
     <!ATTLIST Corning_support_brand...45 cvalue (
      non_Corning...131 |
      CMT_GAPS...132 ) #REQUIRED>

     <!ELEMENT TeleChem_support_brand...46 EMPTY>
     <!ATTLIST TeleChem_support_brand...46 cvalue (
      non_TeleChem...133 |
      Aldehyde...134 |
      SuperAldehyde...135 ) #REQUIRED>

     <!ELEMENT spotted_material...5 EMPTY>
     <!ATTLIST spotted_material...5 cvalue (
      PCR...17 |
      colonies...18 |
      DNA_.DASH._oligo...19 |
      PNA_.DASH._oligo...20 ) #REQUIRED>

     <!ELEMENT spotted_material_property...69 EMPTY>
     <!ATTLIST spotted_material_property...69 cvalue (
      single_stranded...200 |
      double_stranded...201 ) #REQUIRED>

     <!ELEMENT number_of_elements_on_array__.BRACKET_OPEN._without_duplicates_.BRACKET_CLOSE._...70 EMPTY>
     <!ATTLIST number_of_elements_on_array__.BRACKET_OPEN._without_duplicates_.BRACKET_CLOSE._...70
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "" >

     <!ELEMENT elements_spotted_as...71 EMPTY>
     <!ATTLIST elements_spotted_as...71 cvalue (
      single...202 |
      duplicate...203 |
      triplicate...204 ) #REQUIRED>

     <!ELEMENT spotted_material_purification...47 EMPTY>
     <!ATTLIST spotted_material_purification...47 cvalue (
      non...136 |
      isopropanol_precipitation...137 |
      QIAquick...138 |
      Multiscreen_NU_Millipore...139 ) #REQUIRED>

     <!ELEMENT spotting_buffer...48 EMPTY>
     <!ATTLIST spotting_buffer...48 cvalue (
      1.5M_NaCl_0.5M_NaOH...140 |
      28mM_EDC_4.4volpromill_NMI...141 |
      spottingsolution_by_diehl...142 |
      MicroSpotting_solution_TeleChem...143 |
      3xSSC...144 |
      3xSSC_50_.PERCENT._DMSO...145 |
      150mM_sodiumphosphate_pH8.5...227 |
      150mM_sodiumphosphate_pH8.5_0.01_.PERCENT._SDS...228 ) #REQUIRED>

     <!ELEMENT spotting_robot...49 EMPTY>
     <!ATTLIST spotting_robot...49 cvalue (
      SDDC_.DASH._2_ESI...146 |
      Biogrid_Biorobotics...147 |
      Microgrid_II_Biorobotics...148 |
      Omnigrid_Genemachines...149 |
      QArray_Genetix...150 ) #REQUIRED>

     <!ELEMENT spotting_pins...50 EMPTY>
     <!ATTLIST spotting_pins...50 cvalue (
      solid...151 |
      SMP_.DASH._3_Telechem...152 |
      Biogrid_Biorobotics...153 ) #REQUIRED>

     <!ELEMENT relative_humidity...51 EMPTY>
     <!ATTLIST relative_humidity...51 cvalue (
      defined...154 |
      estimated...155 |
      unknown_.BRACKET_OPEN._enter_0_.PERCENT.__.BRACKET_CLOSE._...156 ) #REQUIRED>

     <!ELEMENT relative_humidity...52 EMPTY>
     <!ATTLIST relative_humidity...52
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "&#x25;" >

     <!ELEMENT temperature...53 EMPTY>
     <!ATTLIST temperature...53 cvalue (
      defined...157 |
      estimated...158 |
      unknown_.BRACKET_OPEN._enter_0deg.C_.BRACKET_CLOSE._...159 ) #REQUIRED>

     <!ELEMENT temperature...54 EMPTY>
     <!ATTLIST temperature...54
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "deg.C" >

     <!ELEMENT postprocessing...55 EMPTY>
     <!ATTLIST postprocessing...55 cvalue (
      neutralizing_by_1.5MNaCL_0.5MTrispH7.5_1mMEDTA...160 |
      2h_at_65deg.C...161 |
      succinic_anhydride_Stanford_protocol...162 |
      succinic_anhydride_protocol_by_diehl...163 |
      BSA_Tigr_protocol...164 |
      NaBH4_Telechem_protocol...165 ) #REQUIRED>

     <!ELEMENT uv_crosslink_applicable...77 EMPTY>
     <!ATTLIST uv_crosslink_applicable...77 cvalue (
      no_.BRACKET_OPEN._enter_0_.BRACKET_CLOSE._...224 |
      yes...225 ) #REQUIRED>

     <!ELEMENT uv_crosslink_energy...78 EMPTY>
     <!ATTLIST uv_crosslink_energy...78
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "x100microJpercm2" >

     <!ELEMENT readfile...6 EMPTY>
     <!ATTLIST readfile...6
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "" >

     <!ELEMENT array_hybridisation...7 EMPTY>
     <!ATTLIST array_hybridisation...7
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "" >

    <!ELEMENT material_source...8 EMPTY>
    <!ATTLIST material_source...8 cvalue (
      fresh...21 |
      frozen...22 |
      RNA_later...23 |
      cDNA_subtraction...94 ) #REQUIRED>

     <!ELEMENT preparation_of_total_RNA...9 EMPTY>
     <!ATTLIST preparation_of_total_RNA...9 cvalue (
      trizol...24 |
      columns...25 |
      phenol...26 |
      not_applicable...95 ) #REQUIRED>

     <!ELEMENT preparation_of_PolyA_.PLUS._...10 EMPTY>
     <!ATTLIST preparation_of_PolyA_.PLUS._...10 cvalue (
      none...27 |
      dynabeads...28 |
      oligotex...29 |
      cellulose...30 |
      not_applicable...96 ) #REQUIRED>

    <!ELEMENT amount_of_RNA...11 EMPTY>
    <!ATTLIST amount_of_RNA...11
                  nvalue CDATA #REQUIRED
                  unit CDATA #FIXED "microgram" >

    <!ELEMENT amount_of_cDNA...40 EMPTY>
    <!ATTLIST amount_of_cDNA...40
                  nvalue CDATA #REQUIRED
                  unit CDATA #FIXED "microgram" >

    <!ELEMENT enzym...12 EMPTY>
    <!ATTLIST enzym...12 cvalue (
      superscript...31 |
      AMV...32 |
      M_.DASH._MLV...33 |
      OmniScript...166 |
      klenow...97 ) #REQUIRED>

     <!ELEMENT priming...13 EMPTY>
     <!ATTLIST priming...13 cvalue (
      oligo_dT...34 |
      anchored_oligo_dT...35 |
      random_hexamer...36 |
      combined_oligo_dT_.DASH._random_hexamer...37 |
      pcr_select...98 ) #REQUIRED>

     <!ELEMENT nucleotide...14 EMPTY>
     <!ATTLIST nucleotide...14 cvalue (
      dCTP...38 |
      dATP...39 |
      aa_.DASH._dUTP...167 |
      dUTP...168 ) #REQUIRED>

     <!ELEMENT nucleotide_removal...56 EMPTY>
     <!ATTLIST nucleotide_removal...56 cvalue (
      G50_Pharmacia...169 |
      ammium_acetate_isopropanol_precipitation...170 |
      Na_acetate_isopropanol_precipitation...226 |
      QIAquick_Qiagen...171 |
      GFX_columns_Pharmacia...172 |
      YM30_Amicon...173 ) #REQUIRED>

     <!ELEMENT label...15 EMPTY>
     <!ATTLIST label...15 cvalue (
      33P...40 |
      32P...41 |
      Cy3...42 |
      Cy5...43 |
      Alexa488...174 |
      Alexa594...175 ) #REQUIRED>

     <!ELEMENT days_from_calibration_date_applicable...66 EMPTY>
     <!ATTLIST days_from_calibration_date_applicable...66 cvalue (
      yes...193 |
      no_.BRACKET_OPEN._enter_0d_.BRACKET_CLOSE._...194 ) #REQUIRED>

     <!ELEMENT days_from_calibration_date...38 EMPTY>
     <!ATTLIST days_from_calibration_date...38
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "d" >

     <!ELEMENT label_incorporation_rate...16 EMPTY>
     <!ATTLIST label_incorporation_rate...16
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "&#x25;" >

     <!ELEMENT total_activity...17 EMPTY>
     <!ATTLIST total_activity...17
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "cpm" >

    <!ELEMENT buffer...18 EMPTY>
    <!ATTLIST buffer...18 cvalue (
      0.5M_Na_phosphate_pH7.2_7_.PERCENT.__SDS...44 |
      5x_SSC_0.1_.PERCENT.__SDS...229 |
      Genisphere3DNA...230 |
      Genisphere3DNAformamide...231 |
      3x_SSC_2.5x_denhardts_0.08_.PERCENT.__SDS...232 |
      5x_SSC_5x_denhardts_0.5_.PERCENT.__SDS...45 |
      4x_SSC_7.2_.PERCENT.__Na_sarcosyl...46 |
      Clontech_Express_hyb...47 |
      ambion_Northern_max...48 |
      3x_SSC_5x_denhardts_1_.PERCENT.__SDS_5_.PERCENT.__dextransulfate_50_.PERCENT.__formamide...221 ) #REQUIRED>

     <!ELEMENT prehybridization_without_target...57 EMPTY>
     <!ATTLIST prehybridization_without_target...57 cvalue (
      no...176 |
      yes...177 ) #REQUIRED>

     <!ELEMENT competitors...19 EMPTY>
     <!ATTLIST competitors...19 cvalue (
      none...49 |
      tRNA...50 |
      Cot1...51 |
      dA20...217 |
      dA40...52 |
      salmon_sperm...53 |
      dA40_Cot1_salmonsperm...99 |
      dA40_Cot1_tRNA_salmonsperm...100 |
      dA40_Cot1_specificoligos_salmonsperm...101 |
      dA40_Cot1_specificoligos_tRNA_salmonsperm...102 ) #REQUIRED>

     <!ELEMENT hybridisation_device...75 EMPTY>
     <!ATTLIST hybridisation_device...75 cvalue (
      water_bath...211 |
      rotating_oven...212 ) #REQUIRED>

     <!ELEMENT hybridisation_instrument...76 EMPTY>
     <!ATTLIST hybridisation_instrument...76 cvalue (
      hybridisation_bottle...213 |
      hybridisation_chamber_corning...214 |
      hybridisation_chamber_TeleChem...215 |
      hybridisation_chamber_ClonTech...216 ) #REQUIRED>

     <!ELEMENT hybridisation_temp...20 EMPTY>
     <!ATTLIST hybridisation_temp...20
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "deg.C" >

     <!ELEMENT buffer_volume...21 EMPTY>
     <!ATTLIST buffer_volume...21
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "ml" >

     <!ELEMENT coverslip_used...58 EMPTY>
     <!ATTLIST coverslip_used...58 cvalue (
      no__.BRACKET_OPEN._enter_size_0_.BRACKET_CLOSE._...178 |
      yes...179 ) #REQUIRED>

     <!ELEMENT coverslip_size...59 EMPTY>
     <!ATTLIST coverslip_size...59
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "mmxmm" >

     <!ELEMENT hybridisation_length...22 EMPTY>
     <!ATTLIST hybridisation_length...22
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "h" >

    <!ELEMENT wash_buffer...23 EMPTY>
    <!ATTLIST wash_buffer...23 cvalue (
      0.1xSSC_0.1_.PERCENT._SDS...54 |
      0.6xSSC_1_.PERCENT._SDS...55 |
      0.2xSSC_0.1_.PERCENT._SDS...56 |
      0.2xSSC...222 |
      0.1xSSC...233 |
      0.06xSSC...234 |
      40mMNaPipH7_0.1_.PERCENT._SDS...57 ) #REQUIRED>

     <!ELEMENT times...24 EMPTY>
     <!ATTLIST times...24
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "" >

     <!ELEMENT wash_length...25 EMPTY>
     <!ATTLIST wash_length...25
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "min" >

     <!ELEMENT temperature...26 EMPTY>
     <!ATTLIST temperature...26
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "deg.C" >

    <!ELEMENT exposure_time_applicable...60 EMPTY>
    <!ATTLIST exposure_time_applicable...60 cvalue (
      yes...180 |
      no__.BRACKET_OPEN._enter_0h_.BRACKET_CLOSE._...181 ) #REQUIRED>

     <!ELEMENT exposure_time...27 EMPTY>
     <!ATTLIST exposure_time...27
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "h" >

     <!ELEMENT measuring_device...28 EMPTY>
     <!ATTLIST measuring_device...28 cvalue (
      MD_storm860_phos...58 |
      MD_storm860_red...59 |
      MD_storm860_blue...60 |
      MD_425...113 |
      MD_475A_phos...114 |
      Fuji_BAS1500...61 |
      Fuji_FLA3000...109 |
      BioRad...62 |
      ScanArray3000_GSI_Lumonics...63 |
      ScanArray5000_GSI_Lumonics...182 |
      Axon_4000a_Axon...183 ) #REQUIRED>

     <!ELEMENT scanning_software...72 EMPTY>
     <!ATTLIST scanning_software...72 cvalue (
      Fuji_Image_Reader_FLA3000_3000G_V1.0...205 |
      BAS_reader_V2.26beta...206 |
      Storm_scanner_control...207 |
      Typhoon_scanner_control_V1.0...208 |
      Scan_Array3000_V3.11_Controller_V2.03...209 |
      Scan_Array_V2.1...210 ) #REQUIRED>

     <!ELEMENT spacial_resolution...73 EMPTY>
     <!ATTLIST spacial_resolution...73
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "microm" >

     <!ELEMENT pixelsize...61 EMPTY>
     <!ATTLIST pixelsize...61
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "micromxmicrom" >

     <!ELEMENT PMT_setting_applicable...62 EMPTY>
     <!ATTLIST PMT_setting_applicable...62 cvalue (
      no_.BRACKET_OPEN._enter_0_.PERCENT.__.BRACKET_CLOSE._...184 |
      yes...185 ) #REQUIRED>

     <!ELEMENT PMT_setting...63 EMPTY>
     <!ATTLIST PMT_setting...63
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "&#x25;" >

     <!ELEMENT laser_power_setting_applicable...64 EMPTY>
     <!ATTLIST laser_power_setting_applicable...64 cvalue (
      no_.BRACKET_OPEN._enter_0_.PERCENT.__.BRACKET_CLOSE._...186 |
      yes...187 ) #REQUIRED>

     <!ELEMENT laser_power_setting...65 EMPTY>
     <!ATTLIST laser_power_setting...65
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "&#x25;" >

     <!ELEMENT imaging_software...29 EMPTY>
     <!ATTLIST imaging_software...29 cvalue (
      AIS...64 |
      HDG...65 |
      XDotsReader...66 |
      imagene...67 |
      Xdigitise...68 |
      GenePixPro...188 |
      QuantArray...189 ) #REQUIRED>

     <!ELEMENT background_correction...30 EMPTY>
     <!ATTLIST background_correction...30 cvalue (
      none...69 |
      local_background...70 |
      block_background...71 |
      empty_spots_average...72 |
      empty_spots_per_block...73 ) #REQUIRED>

     <!ELEMENT spot_detection...31 EMPTY>
     <!ATTLIST spot_detection...31 cvalue (
      all_spots...74 |
      only_positive_spots...75 ) #REQUIRED>

     <!ELEMENT spot_dimension__.BRACKET_OPEN._diameter_.BRACKET_CLOSE._...74 EMPTY>
     <!ATTLIST spot_dimension__.BRACKET_OPEN._diameter_.BRACKET_CLOSE._...74
                   nvalue CDATA #REQUIRED
                   unit CDATA #FIXED "microm" >

     <!ELEMENT spot_size...32 EMPTY>
     <!ATTLIST spot_size...32 cvalue (
      fixed...76 |
      variable...77 ) #REQUIRED>

     <!ELEMENT intensity_measurement...33 EMPTY>
     <!ATTLIST intensity_measurement...33 cvalue (
      highest_value_in_spot_centre...78 |
      sum_of_pixels_within_boundary...79 |
      mean_of_pixels_within_boundary...80 ) #REQUIRED>

    <!ELEMENT organism...34 EMPTY>
    <!ATTLIST organism...34 cvalue (
      Saccharomyces_cerevisiae...81 |
      Arabidopsis_thaliana...82 |
      murine_biopsy...83 |
      murine_cell_line...103 |
      human_biopsy...84 |
      human_cell_line...85 |
      Bacillus_subtilis...86 |
      Trypanosoma_brucei...192 |
      Candida_albicans...199 |
      Neurospora_crassa...220 ) #REQUIRED>

    <!ELEMENT date_of_entry_day...35 EMPTY>
    <!ATTLIST date_of_entry_day...35
                  nvalue CDATA #REQUIRED
                  unit CDATA #FIXED "" >

    <!ELEMENT date_of_entry_month...36 EMPTY>
    <!ATTLIST date_of_entry_month...36
                  nvalue CDATA #REQUIRED
                  unit CDATA #FIXED "" >

    <!ELEMENT date_of_entry_year...37 EMPTY>
    <!ATTLIST date_of_entry_year...37
                  nvalue CDATA #REQUIRED
                  unit CDATA #FIXED "" >

    <!ELEMENT experimentator...39 EMPTY>
    <!ATTLIST experimentator...39 cvalue (
      aign...218 |
      bastuk...104 |
      bauer...235 |
      becerra...115 |
      bier...105 |
      boer...88 |
      diehl...190 |
      fischer...196 |
      grahlmann...191 |
      grees...219 |
      hauser...87 |
      kornacker...91 |
      lagorce...112 |
      lombardia...107 |
      lutz...90 |
      meijer...108 |
      mendel...92 |
      reile...198 |
      scheideler...195 |
      schrenk...197 |
      steiner...111 |
      sueltmann...110 |
      tournu...106 |
      wilmer...89 |
      wittig...93 |
      yin...116 ) #REQUIRED>

    <!ELEMENT strain_definition...9035 EMPTY>
    <!ATTLIST strain_definition...9035 cvalue (
      undefined...9087 |
      mutant...9088 |
      RNAi_phenotype...9089 ) #REQUIRED>

    <!ELEMENT strain_definition...9036 EMPTY>
    <!ATTLIST strain_definition...9036 cvalue (
      undefined...9090 |
      mutant...9091 |
      RNAi_phenotype...9092 ) #REQUIRED>

    <!ELEMENT strain_definition...9037 EMPTY>
    <!ATTLIST strain_definition...9037 cvalue (
      defined...9093 |
      undefined...9094 |
      cross...9095 ) #REQUIRED>

    <!ELEMENT type_definition...9038 EMPTY>
    <!ATTLIST type_definition...9038 cvalue (
      defined...9096 |
      undefined...9097 ) #REQUIRED>

     <!ELEMENT strain_definition...9039 EMPTY>
     <!ATTLIST strain_definition...9039 cvalue (
      Wildtype...9098 |
      cross...9099 |
      mutant...9100 |
      RNAi...9101 ) #REQUIRED>

     <!ELEMENT sex_of_experiment_animal...9040 EMPTY>
     <!ATTLIST sex_of_experiment_animal...9040 cvalue (
      male...9102 |
      female...9103 |
      mixed...9104 |
      unknown...9105 ) #REQUIRED>

    <!ELEMENT wildtype_ID...9041 EMPTY>
    <!ATTLIST wildtype_ID...9041 cvalue (
      no_wildtype...9106 |
      wt_1__.BRACKET_OPEN._stoloniferous_.BRACKET_CLOSE._...9107 |
      wt_2__.BRACKET_OPEN._plateforming_.BRACKET_CLOSE._...9108 ) #REQUIRED>

     <!ELEMENT mutant_ID...9042 EMPTY>
     <!ATTLIST mutant_ID...9042 cvalue (
      no_mutant...9109 |
      Diss...9110 |
      He_.DASH._mh...9111 |
      Dpp...9112 |
      Gkp...9113 |
      Bst...9114 ) #REQUIRED>

     <!ELEMENT RNAi_ID...9043 EMPTY>
     <!ATTLIST RNAi_ID...9043 cvalue (
      no_RNAi...9115 |
      act1...9116 |
      ast1...9117 |
      ast2...9118 |
      cad1...9119 ) #REQUIRED>

     <!ELEMENT developmental_stage...9044 EMPTY>
     <!ATTLIST developmental_stage...9044 cvalue (
      gamet...9120 |
      zygote...9121 |
      gastrula...9122 |
      planula...9123 |
      induced_planula...9124 |
      primary_polyp...9125 |
      immature_colony...9126 |
      mature_colony...9127 ) #REQUIRED>

    <!ELEMENT time_of_preparation...9045 EMPTY>
    <!ATTLIST time_of_preparation...9045 cvalue (
      morning...9128 |
      afternoon...9129 |
      evening...9130 ) #REQUIRED>

     <!ELEMENT preparator...9046 EMPTY>
     <!ATTLIST preparator...9046 cvalue (
      Jasna_Guduric...9131 |
      Uri_Frank...9132 |
      Brahim_Mali...9133 |
      Regina_Teo...9134 |
      Frank_Moehrlen...9135 |
      Guenter_Plickert...9136 |
      Melanie_Maniura...9137 |
      Thomas_Leitz...9138 |
      Stefanie_Seipp...9139 ) #REQUIRED>

    <!ELEMENT fed_last_24_hours...9047 EMPTY>
    <!ATTLIST fed_last_24_hours...9047 cvalue (
      yes...9140 |
      no...9141 ) #REQUIRED>

    <!ELEMENT fed_last_24_hours...9048 EMPTY>
    <!ATTLIST fed_last_24_hours...9048 cvalue (
      whole_animals...9142 |
      selected_tissues...9143 ) #REQUIRED>

     <!ELEMENT embryonic...9049 EMPTY>
     <!ATTLIST embryonic...9049 cvalue (
      no...9144 |
      yes...9145 ) #REQUIRED>

     <!ELEMENT posterior_planula...9050 EMPTY>
     <!ATTLIST posterior_planula...9050 cvalue (
      no...9146 |
      yes...9147 ) #REQUIRED>

     <!ELEMENT anterior_planula...9051 EMPTY>
     <!ATTLIST anterior_planula...9051 cvalue (
      no...9148 |
      yes...9149 ) #REQUIRED>

     <!ELEMENT tentacles...9052 EMPTY>
     <!ATTLIST tentacles...9052 cvalue (
      no...9150 |
      yes...9151 ) #REQUIRED>

     <!ELEMENT head...9053 EMPTY>
     <!ATTLIST head...9053 cvalue (
      no...9152 |
      yes...9153 ) #REQUIRED>

     <!ELEMENT body_column...9054 EMPTY>
     <!ATTLIST body_column...9054 cvalue (
      no...9154 |
      yes...9155 ) #REQUIRED>

     <!ELEMENT stolones...9055 EMPTY>
     <!ATTLIST stolones...9055 cvalue (
      no...9156 |
      yes...9157 ) #REQUIRED>

     <!ELEMENT stolone_tip...9056 EMPTY>
     <!ATTLIST stolone_tip...9056 cvalue (
      no...9158 |
      yes...9159 ) #REQUIRED>

     <!ELEMENT stolone_mat...9057 EMPTY>
     <!ATTLIST stolone_mat...9057 cvalue (
      no...9160 |
      yes...9161 ) #REQUIRED>

    <!ELEMENT tissue_specificity...9058 EMPTY>
    <!ATTLIST tissue_specificity...9058 cvalue (
      no...9162 |
      yes...9163 ) #REQUIRED>

     <!ELEMENT development...9059 EMPTY>
     <!ATTLIST development...9059 cvalue (
      no...9164 |
      yes...9165 ) #REQUIRED>

     <!ELEMENT RNAi_phenotype...9060 EMPTY>
     <!ATTLIST RNAi_phenotype...9060 cvalue (
      no...9166 |
      yes...9167 ) #REQUIRED>

     <!ELEMENT strain_specificity...9061 EMPTY>
     <!ATTLIST strain_specificity...9061 cvalue (
      no...9168 |
      yes...9169 ) #REQUIRED>

     <!ELEMENT Induction_or_treatment...9062 EMPTY>
     <!ATTLIST Induction_or_treatment...9062 cvalue (
      no...9170 |
      yes...9171 ) #REQUIRED>

     <!ELEMENT regeneration...9063 EMPTY>
     <!ATTLIST regeneration...9063 cvalue (
      no...9172 |
      yes...9173 ) #REQUIRED>