del_mnn9_AR27

25-Sep-2001 by nhauser
multiconditional experiment no. (if not recombined): 5
hybridisations (conditions & MCE(s) marked by brackets): {{38,39,40,41},{42,43,44,45}}
normalization method [parameters]: log. reg. 2
intensity threshold: 450000

			factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
			condition1	condition0(CONTROL)	condition1	functional category	description
			delta mnn9	wt, strain AR27	delta mnn9


*	YAL001C	TFC3______	-1.01	99141	98487	transcription	TFIIIC 138 kD subunit
	YBR166C	TYR1______	+1.05	376129	394174	tyrosine biosynthesis	prephenate dehydrogenase (NADP+
	YCR102W	__________	+1.18	167403	197906	unknown	unknown
	YDR037W	KRS1______	-1.26	2470167	1953274	protein synthesis	tRNA synthetase, lysyl
	YDR404C	RPB7______	-1.29	605771	469511	transcription	RNA polymerase II 19 kD subunit
	YER099C	PRS2______	-1.38	601923	436577	purine biosynthesis	ribose-phosphate pyrophosphokinase
	YGL097W	SRM1______	-1.12	701082	624285	nuclear targeting; mating	GDP/GTP exchange factor for Gsp1p/Gsp2p
	YGR204W	ADE3______	+1.09	520141	566212	purine biosynthesis	C1-5,6,7,8-tetrahydrofolate synthase
	YIL001W	__________	+1.17	197188	229908	unknown	unknown
	YJL098W	SAP185____	-1.10	227752	207235	cell cycle	Sit4p-associated protein
	YKL095W	YJU2______	-1.16	124741	107318	unknown	unknown
	YLR030W	__________	-1.02	130945	128686	unknown	unknown
	YLR402W	__________	-1.20	125157	104659	unknown	unknown
	YNL189W	SRP1______	+1.19	1314089	1570026	nuclear protein targeting	alpha-karyopherin
	YOL095C	HMI1______	+1.00	177381	178028	unknown	mitochondrial DNA helicase (putative)
	YOR305W	__________	+1.19	607611	720305	unknown	unknown
	YPL283C	YRF1-7____	+1.02	134932	137348	unknown	Y' helicase (subtelomerically-encoded)
	YBL095W	__________	+1.01	227409	229311	unknown	unknown
	YCL001W	RER1______	+1.04	105053	109721	secretion; protein targeting	ER protein retention (Golgi membrane protein)
	YDL097C	RPN6______	+1.11	1233382	1371354	protein degradation	26S proteasome regulatory subunit
	YDR220C	__________	+1.02	112050	114795	unknown	unknown
	YEL001C	__________	+1.18	1153008	1358431	unknown	unknown
	YFR020W	__________	-1.01	195000	192678	unknown	unknown
	YGR025W	__________	+1.08	115766	125405	unknown	unknown
	YHR038W	FIL1______	-1.12	221148	197796	protein syntehsis	robosomal protein, mitochondrial (putative)
	YIR008C	PRI1______	+1.02	296776	303929	DNA replication	DNA primase subunit
	YJR064W	CCT5______	-1.21	1381352	1140703	protein targeting	cytoplasmic chaperonin complex
	YKR061W	KTR2______	+3.25	199645	649334	protein glycosylation	putative mannosyltransferase; type 2 membrane protein
	YLR218C	__________	-1.07	151242	141995	unknown	unknown
	YML088W	__________	+1.23	374057	461316	unknown	unknown
	YNL001W	DOM34_____	-1.02	539929	531124	protein synthesis (putative)	unknown
	YNR040W	__________	+1.04	103884	107981	unknown	unknown; zinc regulated
	YOR119C	RIO1______	-1.21	346700	285633	unknown	unknown; similar to a C.elegans ZK632.3 protein
	YPL095C	__________	+1.18	221569	260995	unknown	unknown; similar to Ybr177p
	YPR186C	PZF1______	+1.14	353012	400774	transcription	TFIIIA
	YAL014C	__________	-1.07	381315	357564	unknown	unknown
	YBR178W	__________	-1.11	105493	95307	unknown	unknown
	YCRX08W	__________	+1.00	134880	134954
	YDR049W	__________	-1.06	194595	184420	unknown	unknown
	YDR416W	SYF1______	-1.11	196881	177746	cell cycle (putative)	unknown; synthetic lethal with cdc40
	YER111C	SWI4______	-1.11	254501	229953	cell cycle	transcription factor
	YGL109W	__________	-1.08	298577	277234	unknown	unknown
	YGR216C	GPI1______	-1.06	281093	264123	protein processing	N-acetylglucosaminylphosphatidylinositol synthesis
	YIL013C	PDR11_____	-1.10	140852	128605	transport	ATP-binding cassette (ABC) family
	YJL110C	GZF3______	-1.01	305179	303378	nitrogen catabolism	transcription factor
	YKL106W	AAT1______	+1.02	325575	333522	aspartate metabolism?	aspartate aminotransferase,
	YLR040C	__________	-4.76	1153960	242456	unknown	unknown
	YLR412W	__________	+1.21	358209	433427	unknown	unknown
	YMR147W	__________	+1.11	159593	177912	unknown	unknown
	YNL201C	__________	+1.13	101178	114094	unknown	unknown
	YOL105C	WSC3______	-1.06	348077	327632	signaling	stress response
	YOR317W	FAA1______	+1.26	681196	855812	fatty acid metabolism	long chain fatty acyl:CoA synthetase
	YPR012W	__________	+1.09	888653	966022	unknown	unknown
	YBL105C	PKC1______	+1.01	179192	181183	cell wall biogenesis	protein kinase C
	YCL012W	__________	+1.42	170015	240910	unknown	unknown
	YDL109C	__________	-1.19	133917	112741	unknown	unknown
	YDR232W	HEM1______	-1.01	294183	290046	heme biosynthesis	5-aminolevulinate synthase
	YEL013W	VAC8______	+1.16	270425	312731	vacuolar protein targeting	vacuolar protein
	YFR031C	RPL2A_____	+1.08	105721	114228	protein synthesis	ribosomal protein L2A
	YGR035C	__________	-1.30	149017	114642	unknown	unknown
	YHR049W	__________	-2.14	1009103	471983	unknown	unknown
	YIR019C	MUC1______	-1.06	149453	140541	flocculation and invasive growth	unknown
	YJR076C	CDC11_____	+1.07	806498	862942	cytokinesis	septin
	YKR073C	__________	-1.20	137962	114581	unknown	unknown
	YLR228C	ECM22_____	-1.18	199588	168578	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
	YML099C	ARG81_____	+1.08	170550	183702	arginine metabolism	transcription factor
	YNL013C	__________	-1.18	498406	422005	unknown	unknown
	YNR052C	POP2______	+1.03	1073183	1100858	glucose derepression	component of CCR4 complex
	YOR131C	__________	+1.21	399987	482208	unknown	unknown; similar to E. coli protein yhfE gene of the dam
	YPL107W	__________	+1.51	302355	455867	unknown	unknown
	YPR198W	SGE1______	+2.41	401546	969244	crystal violet resistance	transporter, major facilitator superfamily
	YAL026C	DRS2______	-1.22	275695	225176	transport	Ca(2+) transporting ATPase
	YBR190W	__________	-1.04	199189	191289	unknown	unknown; similar to glycosyl hydrolases
	YCRX20C	__________	-1.12	125239	112204
	YDR061W	__________	+1.20	303296	364531	unknown	unknown; similar to E. coli photorepair protein
	YDR428C	__________	-1.09	226653	208326	unknown	unknown
	YER122C	GLO3______	+1.15	664751	764347	cell proliferation	unknown
	YGL121C	__________	+1.46	183175	268305	unknown	unknown
	YGR228W	__________	-1.02	754394	737594	unknown	unknown
	YIL024C	__________	-1.55	346079	222972	unknown	unknown
	YJL122W	__________	-1.64	867844	528905	unknown	unknown
	YKL118W	__________	-1.13	148558	131757	unknown	unknown
	YLR052W	__________	-1.02	337430	332045	unknown	unknown
	YLR424W	__________	+1.33	186801	248489	unknown	unknown; similar to retrovirus-related protease
	YMR158W	__________	-1.06	278984	263382	unknown	unknown; similar E. coli ribosomal protein S8
	YNL213C	__________	+1.08	239877	259310	unknown	unknown
	YOL117W	__________	+1.16	138100	159844	unknown	unknown
	YOR329C	SCD5______	+1.12	290883	324568	secretion	suppressor of clathrin deficiency
	YPR024W	YME1______	+1.28	279907	359043	mitochondrial protein processing	AAA family protease
	YBR004C	__________	+1.31	226656	296420	unknown	expressed during sporulation
	YCL025C	AGP1______	+1.17	177314	207246	transport	amino acid permease
	YDL121C	__________	-1.43	716406	499661	unknown	unknown
	YEL024W	RIP1______	-1.15	714971	622704	respiration	ubiquinol cyt.-c reductase iron-sulfur protein
	YFR041C	__________	+1.38	410796	567346	unknown	unknown; similar to dnaJ proteins Sis1p, Mdj1p, and Scj1p
	YGR042W	__________	+1.22	293043	358877	unknown	unknown
	YHR059W	__________	-1.14	278446	245303	unknown	unknown
	YIR029W	DAL2______	-1.06	214099	202861	allantoin utilization	allantoicase
	YJR089W	BIR1______	+1.10	173823	191042	unknown	unknown
	YKR085C	MRPL20____	-1.21	393008	323945	protein synthesis	ribosomal protein, mitochondrial L20
	YLR240W	VPS34_____	+1.04	125148	129812	vacuolar protein targeting	phosphatidylinositol 3-kinase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YML109W	ZDS2______	+1.04	231520	239757	cell cycle	Zds1 homolog
YNL025C	SSN8______	+1.29	147696	191022	transcription	RNA polymerase II mediator subunit
YNR064C	__________	+1.32	187943	248894	unknown	unknown; similar to Rhodobacter capsulatus bchO
YPL119C	DBP1______	-1.05	161252	153766	mRNA processing	RNA helicase
YAL035W	FUN12_____	-1.05	774776	738557	unknown	unknown; similar to Bacillus subtilis IF2
YBR202W	CDC47_____	-1.36	350562	256875	DNA replication	MCM initiator complex
YDR073W	SNF11_____	-1.13	316073	279423	transcription	component of SWI/SNF global activator complex
YDR440W	DOT1______	-1.22	206223	168641	meiosis, checkpoint; transcriptional silencing	unknown
YER134C	__________	+1.00	91607	91917	unknown	unknown
YGL133W	ITC1______	+1.12	161373	180814	chromatin structure	chromatin remodeling complex subunit
YGR240C	PFK1______	-1.05	189876	180430	glycolysis	phosphofructokinase
YIL036W	CST6______	+1.18	307065	363176	chromosome stability	unknown; similar to Mei4p and to cAMP response element
YJL134W	LCB3______	+1.01	444193	449103	sphingolipid metabolism	sphingoid base-phosphate phosphatase
YKL130C	SHE2______	+1.10	250193	274104	cell polarity	asymmetric HO expression
YLR064W	__________	-1.13	529063	467323	unknown	unknown
YLR434C	__________	-1.05	190177	181530	unknown	unknown
YNL225C	CNM67_____	+1.20	147006	177003	cytoskeleton	spindle pole body component
YOL129W	__________	+1.42	586629	831056	unknown	unknown
YOR341W	RPA190____	+1.17	833115	973061	transcription	RNA polymerase I 190 kD subunit
YPR036W	VMA13_____	+1.72	1355383	2326252	vacuolar acidification	vacuolar H+-ATPase V1 domain 54 KD subunit
YBR014C	__________	+1.33	343765	456112	unknown	unknown; similar to glutaredoxin
YCL037C	SRO9______	-1.03	122730	119716	cytoskeleton	actin filament organization
YDL132W	CDC53_____	+1.21	274880	333080	cell cycle	G1 cyclin degradation
YDR256C	CTA1______	-1.10	159775	145425	oxidative stress response	catalase A
YEL036C	ANP1______	-1.24	1269342	1022222	protein glycosylation	mannosyltransferase complex subunit
YFR053C	HXK1______	-1.12	816900	732386	glycolysis	hexokinase I
YGR054W	__________	-1.06	277098	260702	unknown	unknown; similar to C. elegans C14B9.6 protein
YHR070W	__________	-1.07	262270	245423	unknown	unknown
YIR041W	__________	+1.28	268652	344219	unknown	unknown; similar to Pau3p, Yil176p, Yil011p and other
YJR100C	__________	+1.15	309561	356900	unknown	unknown
YKR097W	PCK1______	+1.16	157208	182733	TCA cycle	phosphoenolpyruvate carboxykinase
YLR252W	__________	+1.27	134954	170838	unknown	unknown
YML120C	NDI1______	+1.58	211826	335597	oxidative phosphorylation	NADH-ubiquinone-6 oxidoreductase
YNR076W	PAU6______	+1.54	377732	582601	unknown	seripauperin family
YOR153W	PDR5______	+2.02	1750802	3534120	drug resistance	transporter
YPL131W	RPL5______	+1.06	15729333	16705830	protein synthesis	ribosomal protein L5
YAL046C	__________	+1.08	308829	334218	unknown	unknown
YBR214W	SDS24_____	+1.47	111287	163283	unknown	unknown; nuclear protein; similar to S. pombe sds23
YDR085C	AFR1______	+1.88	172743	324849	mating	cytoskeletal protein, similar to arrestins
YDR452W	PHM5______	+1.41	439420	619147	phosphate metabolism (putative)	vacuolar polyphosphatase
YER144C	UBP5______	+1.47	146264	215274	unknown	ubiquitin pathway
YGL145W	TIP20_____	+1.10	329934	362107	secretion	unknown; interacts with Sec20p
YGR252W	GCN5______	-1.04	227773	218660	chromatin structure	histone acetyltransferase
YIL048W	NEO1______	+1.14	228640	260295	neomycin resistance	ATPase
YJL146W	IDS2______	+1.04	285941	297377	signaling, meiosis pathway	Putative activator of Ime2p
YKL142W	MRP8______	+2.09	572017	1194157	protein synthesis	ribosomal protein, mitochondrial small subunit
YLR076C	__________	-1.58	15572295	9885971	unknown	unknown
YLR446W	__________	-1.19	345398	289820	unknown	unknown; similar to human hexokinase I
YMR179W	SPT21_____	+1.15	223198	257155	transcription	transcriptional regulator
YNL237W	YTP1______	+1.10	145658	159663	unknown	unknown; similar to mitochondrial electron transport proteins
YOL141W	PPM2______	-1.08	108995	101364	protein modification	carboxymethyltransferase
YOR351C	MEK1______	-1.01	108543	107886	meiosis	protein kinase
YPR048W	TAH18_____	+1.10	204292	225518	unknown	unknown; similar to NAPDH-cytochrome P450 reductase
YBR026C	(MRF1)____	+1.29	344562	446186	mitochondrial respiration	ARS-binding protein
YCL049C	__________	+1.65	234757	388021	unknown	unknown
YDL143W	CCT4______	-1.08	1276791	1181091	protein folding	cytoplasmic chaperonin subunit
YDR264C	AKR1______	+1.27	319834	405442	signaling, pheromone pathway; endocytosis; cell shape control	ankyrin-containing protein
YEL048C	__________	-1.08	165698	153115	unknown	unknown
YGR066C	__________	-1.06	116634	109523	unknown	unknown; similar to Vid24p
YHR080C	__________	-1.01	149993	148316	unknown	unknown; similar to Yfl042p
YJR112W	NNF1______	-1.44	441936	307921	mitosis	nuclear envelope protein
YLR261C	__________	+1.01	324192	325950	unknown	unknown
YML132W	COS3______	+3.01	1060052	3193569	unknown	unknown; similar to subtelomerically-encoded proteins
YNL047C	__________	+1.12	166059	186764	unknown	unknown; similar to Ask10p
YOR165W	__________	+1.01	233705	235469	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YPL143W	RPL33A____	-1.33	2569832	1931108	protein synthesis	ribosomal protein L33A
YAL060W	__________	-1.12	423926	378760	unknown	unknown; similar to alcohol/sorbitol dehydrogenase
YBR226C	__________	-1.06	90802	85640	unknown	unknown
YDR097C	MSH6______	-1.11	158804	142468	DNA repair	MutS homolog; mismatch repair
YDR464W	SPP41_____	-1.05	113361	107980	splicing	negative regulator of spliceosome genes
YER154W	OXA1______	-1.11	534712	481996	respiration	cytochrome c oxidase assembly
YGL157W	__________	+1.18	291909	345873	unknown	unknown; similar to tomato dihydroflavonol 4-reductase
YGR264C	MES1______	-1.13	1216729	1075963	protein synthesis	tRNA synthetase, methionyl
YIL060W	__________	-1.77	7807524	4419927	unknown	unknown
YJL158C	CIS3______	-1.65	5795684	3512762	unknown	unknown; overexpression suppresses cik1 deletion
YKL154W	SRP102____	-1.39	1008798	725596	secretion	signal recognition particle subunit
YLR088W	GAA1______	-1.09	201431	185551	protein processing	GPI:protein transamidase component
YLR458W	__________	+1.13	137550	155477	unknown	unknown
YMR191W	__________	+2.71	293534	795241	unknown	unknown
YNL249C	MPA43_____	+1.22	210015	256815	unknown	unknown; similar to YDR109c
YOL153C	__________	+1.19	172926	205413	unknown	unknown
YOR363C	PIP2______	+1.14	155243	176855	peroxisome proliferation	transcription factor
YPR060C	ARO7______	+1.12	539406	604855	aromatic amino acid biosynthesis	chorismate mutase
YBR038W	CHS2______	-1.04	94859	91078	cell wall biogenesis	chitin synthase II
YCL061C	__________	-1.06	645635	611356	unknown	unknown
YDL155W	CLB3______	-1.02	429630	420432	cell cycle	G2/M cyclin
YDR276C	PMP3______	-1.20	1257078	1046473	salt tolerance (putative)	unknown
YEL059W	__________	-1.02	155738	152377	unknown	unknown
YGR078C	PAC10_____	-1.33	645817	487057	cytoskeleton	non-native actin binding complex subunit
YHR092C	HXT4______	-1.12	146716	130822	transport	hexose permease
YJR124C	__________	-1.34	523438	389548	unknown	unknown; similar to multidrug resistance proteins
YLR272C	YCS4______	-1.01	186069	183364	mitosis, sister chromatid cohesion	cohesin complex component
YMR011W	HXT2______	+1.22	1863734	2272049	transport	hexose permease
YNL057W	__________	+1.60	273578	438520	unknown	unknown
YOR177C	__________	+1.15	139808	160223	unknown	unknown
YPL155C	KIP2______	+1.14	161437	184093	cytoskeleton (putative)	kinesin-related protein
YAR003W	__________	+1.10	140248	154682	unknown	unknown
YBR238C	__________	+1.15	251381	290261	unknown	unknown
YDR107C	__________	+1.19	155431	185422	unknown	unknown; similar to Emp70p
YDR476C	__________	+1.59	289993	460951	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YER164W	CHD1______	+1.01	363467	366558	transcription	chromodomain-helicase-DNA-binding (CHD) family
YGL169W	SUA5______	-1.19	497755	418042	protein synthesis	translation initiation protein
YGR276C	RNH70_____	+1.06	530847	562439	DNA replication (putative)	ribonuclease H
YIL070C	MAM33_____	-1.15	385464	334314	respiration	mitochondrial acidic matrix protein
YJL170C	ASG7______	+1.40	132140	185545	unknown	unknown
YKL166C	TPK3______	+1.07	204916	219536	signaling, nutrient control of cell growth	cAMP-dependent protein kinase catalytic subunit
YLR100W	ERG27_____	-1.29	1777218	1378480	sterol metabolism	3-keto sterol reductase
YMR202W	ERG2______	-1.53	1617619	1055004	sterol metabolism	C-8 sterol isomerase
YNL261W	ORC5______	+1.13	339450	384230	DNA replication	origin recognition complex, 50 kD subunit
YOL165C	AAD15_____	+1.37	409612	559653	unknown	hypothetical aryl-alcohol dehydrogenase
YOR375C	GDH1______	+2.16	714316	1543545	glutamate biosynthesis	glutamate dehydrogenase
YPR072W	NOT5______	+1.01	358333	361187	transcription	global negative regulator cpmplex component
YBR050C	REG2______	+1.07	120170	128563	glucose repression	(putative) Glc7p regulatory subunit
YCL076W	__________	-1.03	110703	107955	unknown	unknown
YDL167C	NRP1______	-1.01	360886	356658	unknown	unknown
YDR288W	__________	-1.11	297928	269032	unknown	unknown
YEL071W	DLD3______	+1.89	728341	1378034	pyruvate metabolism	D-lactate dehydrogenase
YGR090W	__________	+1.07	331560	354581	unknown	unknown
YHR104W	GRE3______	+1.56	411519	641876	unknown	induced by osmotic stress
YJR136C	__________	+1.14	219086	248787	unknown	unknown
YLR284C	ECI1______	-1.21	160061	132289	unknown	putative enoyl-CoA hydratase, peroxisomal
YMR023C	MSS1______	+1.26	168466	212438	protein synthesis (putative)	mitochondrial GTPase; COX1 expression
YNL069C	RPL16B____	-1.20	9897224	8241158	protein synthesis	ribosomal protein L16B
YOR189W	__________	+1.16	378280	439261	unknown	unknown
YPL167C	REV3______	+1.04	129890	135725	DNA repair	polymerase zeta subunit
YAR028W	__________	+1.45	236608	343529	unknown	unknown; similar to subtelomerically-encoded proteins
YBR250W	__________	+1.07	115596	123498	unknown	unknown
YDR119W	__________	-1.13	1274227	1124711	unknown	unknown; similar to human cystic fibrosis
YDR488C	PAC11_____	-1.26	192693	153187	unknown	unknown; required in absence of Cin8p
YER174C	GRX4______	-1.45	537428	371064	oxidative stress response	glutaredoxin
YGL181W	GTS1______	+1.05	421224	443018	heat shock, flocculation, and bud emergence	transcription factor
YGR288W	MAL13_____	+1.18	179529	211158	maltose utilization	regulator of maltose metabolic genes
YJL182C	__________	-1.13	114000	101078	unknown	unknown
YKL178C	STE3______	-10.72	2375117	221648	mating	a-factor receptor
YLR112W	__________	-1.57	189823	121132	unknown	unknown
YMR214W	SCJ1______	+1.80	553901	995099	unknown	unknown; similar to E. coli DnaJ
YNL273W	TOF1______	+1.28	345132	442195	unknown	topoisomerase I interacting factor
YOR011W	__________	+1.18	186786	221320	unknown	ATP-binding cassette (ABC) superfamily
YOR387C	__________	-1.05	162729	155715	unknown	unknown
YPR084W	__________	+1.18	232714	274126	unknown	unknown
YBR062C	__________	-1.05	255687	244226	unknown	unknown
YCLX12W	__________	-1.13	262873	232655
YDL179W	PCL9______	+1.09	209491	227722	cell cycle	cyclin (Pho85p)
YDR300C	PRO1______	-1.14	433571	381817	proline biosynthesis	glutamate 5-kinase
YER005W	YND1______	-1.07	279583	261537	protein glycosylation (putative)	apyrase (NDPase/NTPase)
YGR102C	__________	+1.30	340750	444662	unknown	unknown
YHR116W	__________	-1.19	334793	281321	unknown	unknown
YJR148W	BAT2______	-1.29	1620754	1260309	branched chain amino acid biosynthesis	transaminase
YLR295C	ATP14_____	+1.27	346026	438709	ATP synthesis	F1F0-ATPase complex, subunit h
YMR034C	__________	+1.09	154894	169603	unknown	unknown
YNL081C	__________	+1.06	435036	461922	unknown	unknown; similar to mitochondrial ribosomal protein S13 of
YOR199W	__________	-1.01	183464	181220	unknown	unknown
YPL179W	PPQ1______	+1.55	428584	663834	translational regulation	protein phosphatase
YBL001C	ECM15_____	-1.29	672275	522696	cell wall biogenesis	unknown
YBR262C	__________	-1.70	416668	245783	unknown	unknown
YDL001W	__________	-1.43	254288	178086	unknown	unknown; similar to Yfr048p
YDR131C	__________	-1.20	158734	132668	unknown	unknown
YDR500C	RPL37B____	-2.23	8023142	3595483	protein synthesis	ribosomal protein L37B
YFL-TYA	TY2A______	-1.15	244379	212000
YGL193C	__________	+1.05	290288	306096	unknown	unknown
YHL001W	RPL14B____	-1.28	15382837	11998118	protein synthesis	ribosomal protein L14B
YIL092W	__________	-1.19	307551	258854	unknown	unknown
YJL194W	CDC6______	-1.24	486993	393372	DNA replication	pre-initiation complex formation
YKL190W	CNB1______	-1.02	827239	809046	signaling	calcineurin regulatory B subunit
YLR124W	__________	-1.03	106615	103090	unknown	unknown
YML001W	YPT7______	+1.06	188886	200831	endocytosis	GTP-binding protein, rab family
YMR226C	__________	+1.65	1619836	2676156	unknown	unknown; similar to insect-type alcohol dehydrogenase,
YOR023C	AHC1______	+1.33	336990	449524	chromatin structure	histone acetyltransferase complex subunit
YPL001W	HAT1______	+1.28	375814	480453	chromatin structure	histone acetyltransferase complex subunit
YPR096C	__________	-1.09	128710	118482	unknown	unknown
YBR074W	__________	-1.51	253634	168063	unknown	unknown; similar to Ape3p (aminopeptidase Y)
YCR012W	PGK1______	-1.14	9950413	8715209	glycolysis	phosphoglycerate kinase
YDL191W	RPL35A____	-1.52	5972627	3922213	protein synthesis	ribosomal protein L35A
YDR312W	SSF2______	-1.26	937071	745361	signaling (putative)	suppresses G-protein beta subunit mutation
YGL001C	ERG26_____	-1.09	297202	273571	sterol metabolism	sterol C-3 dehydrogenase
YGR112W	SHY1______	+1.12	192228	215162	respiration	unknown
YHR128W	FUR1______	-1.14	1643833	1440494	pyrimidine salvage pathway	uracil phosphoribosyltransferase
YJL001W	PRE3______	+1.07	1089355	1167735	protein degradation	20S proteasome subunit (beta1)
YKL001C	MET14_____	+1.02	139161	142480	sulfate assimilation	adenylylsulfate kinase
YLL001W	DNM1______	+1.21	337941	407360	endocytosis	dynamin-related protein
YLR307W	CDA1______	+1.08	110365	118673	sporulation	chitin deacetylase
YNL093W	YPT53_____	+1.34	108083	144583	endocytosis	GTP-binding protein, rab family
YOL001W	PHO80_____	+1.33	255624	338752	cell cycle	cyclin (Pho85p)
YOR211C	MGM1______	+1.04	130187	135536	mitochondrial genome maintenance	dynamin family protein
YPL190C	NAB3______	+1.08	592632	641871	mRNA splicing	nuclear polyadenylated RNA-binding protein
YAR050W	FLO1______	+1.08	111485	120526	flocculation	cell wall protein
YBL011W	SCT1______	-1.03	186640	181193	unknown	suppresses a choline-transport mutant
YBR274W	CHK1______	+1.03	203334	209275	cell cycle	DNA damage checkpoint protein kinase
YDL013W	HEX3______	+1.13	205668	232600	hexose metabolism (putative)	unknown
YDR143C	SAN1______	-1.04	199004	190553	silencing	(putative) transcriptional regulator
YDR512C	__________	-1.01	362896	358672	unknown	unknown
YFL010C	__________	+1.48	1245147	1843804	unknown	unknown
YGL205W	POX1______	-1.01	140071	139336	fatty acid metabolism	acyl-CoA oxidase
YHL009C	YAP3______	+1.02	206924	211186	transcription	basic leu zipper transcription factor
YIL103W	__________	-1.10	432862	392341	unknown	unknown; similar to diptheria toxin resistance protein
YJL206C	__________	+1.09	149307	162953	unknown	unknown; similar to Put3p and other transcription
YKL202W	__________	+1.01	116741	118364	unknown	unknown
YLR136C	TIS11_____	+1.31	115457	151288	unknown	unknown
YML011C	__________	+1.02	249569	255128	unknown	unknown
YMR238W	DFG5______	+4.03	615934	2482216	pseudohyphal growth	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YNL295W	__________	+1.08	165129	178820	unknown	unknown
YOR035C	SHE4______	+1.35	194713	262031	asymmetric HO expression	unknown
YPL013C	__________	+1.05	453541	477081	protein synthesis	ribosomal protein, mitochondrial S16
YPR108W	RPN7______	+1.26	750134	947084	protein degradation	26S proteasome regulatory subunit
YBR085W	AAC3______	-1.44	309123	213944	transport	mitochondrial ADP/ATP translocator
YCR023C	__________	-1.21	263992	218224	unknown	major facilitator superfamily
YDL203C	__________	-1.10	184998	167573	unknown	unknown
YDR322W	MRPL35____	-1.19	267717	225365	protein synthesis	ribosomal protein, mitochondrial L35
YER025W	GCD11_____	-1.17	1762352	1502467	protein synthesis	translation initiation factor eIF2 gamma subunit
YGL013C	PDR1______	-1.03	212457	205601	transport	transcription factor, regulates ABC transporters
YGR124W	ASN2______	+1.22	2166161	2634315	asparagine biosynthesis	asparagine synthetase
YHR139C	SPS100____	-1.16	162571	139666	sporulation	spore wall maturation protein
YJL013C	MAD3______	-1.02	389220	383444	cell cycle	spindle checkpoint complex subunit
YKL012W	PRP40_____	+1.28	255501	327601	mRNA splicing	U1 snRNP protein
YLL013C	__________	-1.61	438437	272997	unknown	unknown; similar to Drosophila pumilio protein
YLR318W	EST2______	+1.04	197534	205999	telomere length regulation	telomerase catalytic subunit
YMR055C	BUB2______	+1.78	158649	281704	cell cycle, checkpoint	unknown
YNL105W	__________	+1.04	111094	115329	unknown	unknown
YOL013C	HRD1______	+1.68	203935	342052	protein degradation	unknown; required to degrade misfolded ER lumenal and integral membrane proteins
YOR223W	__________	+1.18	314316	371130	unknown	unknown; similar to class II family of aminoacyl-tRNA
YPL202C	__________	+1.11	338231	375801	unknown	unknown; similar to Rcs1p
YAR073W	IMD1______	+1.09	1589892	1735853	unknown	unknown; similar to Pur5p, may be an inosine-5'-monophosphate dehydrogenase
YBL023C	MCM2______	-1.12	306363	273437	DNA replication	MCM initiator complex
YBR286W	APE3______	+1.45	1021727	1479175	protein degradation	vacuolar aminopeptidase Y
YDL025C	__________	+1.17	158568	185900	unknown	putative protein kinase
YDR155C	CPH1______	+1.73	971409	1678517	protein folding	peptidyl-prolyl cis-trans isomerase
YDR524C	AGE1______	+1.17	317637	370835	secretion	GTPase activating protein for ARFs
YFL019C	__________	+1.06	131847	140310	unknown	unknown
YGL217C	__________	-1.19	146527	122845	unknown	unknown; similar to mouse kinesin-related protein KIF3
YHL021C	__________	+1.14	219555	249251	unknown	unknown
YIL115C	NUP159____	+1.04	614538	640936	nuclear protein targeting	nuclear pore protein
YJL218W	__________	-1.41	184356	130654	unknown	unknown; similar to E. coli galactoside O-acetyltransferase
YKL214C	__________	-1.13	372221	328326	unknown	unknown
YLR148W	PEP3______	-1.02	274289	268496	vacuole biogenesis	vacuolar membrane protein
YML022W	APT1______	-1.25	1501334	1200137	purine biosynthesis	adenine phosphoribosyltransferase
YMR251W	__________	+1.07	132388	141195	unknown	unknown
YNL307C	MCK1______	+1.31	601546	785593	meiosis	protein kinase
YOR047C	STD1______	+1.16	510151	591056	glucose repression	modulator of glucose repression
YPL025C	__________	-2.15	340903	158524	unknown	unknown
YPR120C	CLB5______	+1.11	202241	224133	cell cycle	G1/S cyclin
YBR096W	__________	+1.08	651741	702203	unknown	unknown
YCR033W	__________	+1.11	120787	133692	unknown	unknown
YDL215C	GDH2______	+1.39	141994	197083	glutamate metabolism	NAD-dependent glutamate dehydrogenase
YDR334W	SWR1______	-1.04	264408	254554	RNA processing (putative)	RNA helicase (putative)
YER037W	__________	+1.70	148416	251803	unknown	unknown
YGL025C	PGD1______	+1.03	924421	954734	transcription	RNA polymerase II mediator subunit
YGR136W	__________	+1.41	749473	1060025	unknown	unknown
YHR149C	__________	+1.04	240155	248894	unknown	unknown
YJL025W	RRN7______	+1.03	232480	239634	transcription	component of rDNA transcription factor
YKL024C	URA6______	+1.06	1115862	1186829	pyrimidine metabolism	uridine-monophosphate kinase
YLL025W	__________	+1.26	306288	386502	unknown	unknown; similar to Pau3p and members of the PAU1 family
YLR330W	CHS5______	+1.42	745111	1058882	cell wall biogenesis	unknown
YMR067C	__________	+1.93	340679	656002	unknown	unknown
YNL117W	MLS1______	+1.04	145546	151569	glyoxylate cycle	malate synthase
YOL025W	LAG2______	+1.14	164885	187339	aging	unknown
YOR235W	__________	-1.16	177245	152826	unknown	unknown
YPL214C	THI6______	+1.27	329431	416900	thiamine biosynthesis	TMP pyrophosphorylase, hydroxyethylthiazole kinase
YER186C	__________	+1.02	498911	508526	unknown	unknown
YBL035C	POL12_____	-1.06	131049	123415	DNA replication	DNA polymerase alpha, 70 kD subunit
YBR298C	MAL31_____	+1.02	99010	100900	transport	maltose permease
YDL037C	__________	-1.11	105998	95913	unknown	similar to glucan 1,4-alpha-glucosidase
YDR167W	TAF25_____	-1.07	518229	484357	transcription	TFIID 23 kD subunit
YDR536W	STL1______	-1.01	145751	144513	transport	hexose transporter (putative)
YFL030W	__________	+1.48	150093	222810	unknown	unknown; similar to Methanobacterium aspartate transaminase
YGL228W	SHE10_____	+1.33	441561	586406	unknown	causes lethality when overexpressed
YHL032C	GUT1______	-1.06	238968	225788	glycerol utilization	glycerol kinase
YIL127C	__________	-1.48	677611	459285	unknown	unknown
YJR006W	HYS2______	-1.01	377520	372684	DNA replication	polymerase delta 55 KD subunit
YKR001C	VPS1______	+1.25	587533	732033	vacuolar protein targeting	GTPase, dynamin family
YLR158C	ASP3-3____	+16.07	141684	2276159	asparagine utilization	L-asparaginase II
YML033W	__________	+1.41	282201	396763
YMR262W	__________	-1.35	391642	290848	unknown	unknown
YNL319W	__________	-1.57	346073	220937	unknown	unknown
YOR059C	__________	+1.23	584653	720142	unknown	unknown
YPL037C	EGD1______	+1.07	6625120	7079223	transcription	regulator of pol II transcribed genes; enhances Gal4 DNA binding
YPR132W	RPS23B____	+1.18	15710343	18535662	protein synthesis	ribosomal protein S23B
YBR108W	__________	+1.32	224893	295859	unknown	unknown; similar to wheat glutenin, secalin
YCR045C	__________	+1.01	127835	128784	unknown	unknown; similar to protease B (Prb1p) and subtilisin family
YDL227C	HO________	+1.10	85484	94374	mating type switching	homothallic switching endonuclease
YDR346C	__________	-1.11	1075896	965202	unknown	unknown
YGL037C	PNC1______	+2.83	282860	799132	pyridine nucleotide cycle	pyrazinamidase and nicotinamidase
YGR148C	RPL24B____	-1.16	15812855	13666721	protein synthesis	ribosomal protein L24B
YHR161C	YAP1801___	-1.16	1175276	1011257	endocytosis and secretion	clathrin assembly protein
YJL037W	__________	-1.05	248916	237639	unknown	unknown
YKL035W	UGP1______	+1.44	450374	648325	pyrimidine metabolism	UGP1, UDP-glucose pyrophosphorylase
YLL037W	__________	-1.38	592427	430030	unknown	unknown; similar to human platelet-activating factor
YLR342W	FKS1______	+1.97	1771440	3484160	cell wall biogenesis	1,3-beta-D-glucan synthase subunit
YMR078C	CTF18_____	+1.95	226022	439666	mitosis, chromosome transmission	unknown
YNL129W	__________	+1.09	171286	186952	unknown	unknown
YOL037C	__________	+1.02	282712	288036	unknown	unknown
YOR247W	SRL1______	+2.45	3592658	8809477	unknown	unknown; similar to Svs1p; suppressor of Rad53 lethality
YPL226W	NEW1______	+1.12	959329	1072636	unknown	unknown; similar to members of the ATP-binding cassette (AC); prion
YHR218W	__________	+1.57	214474	336223	unknown	unknown; similar to other subtelomerically-encoded proteins
YBL047C	__________	-1.08	139968	130002	unknown	unknown; similar to Uso1p, Pan1p, and mouse eps15
YDL049C	KNH1______	+1.27	100688	128102	cell wall biogenesis	Kre9p homolog
YDR177W	UBC1______	+1.19	749774	895717	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YFL040W	__________	+1.08	130100	140817	unknown	unknown; similar to members of the sugar transport family
YGL240W	DOC1______	-1.01	184455	182306	cell cycle	anaphase-promoting complex subunit
YHL044W	__________	+1.14	139979	159540	unknown	unknown; similar to subtelomerically-encoded proteins
YIL139C	REV7______	-1.03	276455	269358	DNA repair	DNA polymerase zeta

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YJR017C	ESS1______	+1.31	517926	680541	protein folding	peptidyl-prolyl cis/trans isomerase
YKR013W	PRY2______	+4.70	1353077	6365192	unknown	unknown; similar to plant PR-pathogen related proteins
YLR170C	APS1______	+1.28	345957	444399	secretion	AP-1 complex subunit
YML043C	RRN11_____	-1.09	263013	240429	transcription	component of rDNA transcription factor
YMR274C	RCE1______	-1.11	232869	209033	protein processing	protease, acts on Ras and a-factor C-termini
YNL331C	AAD14_____	+1.33	345797	458410	unknown	hypothetical aryl-alcohol dehydrogenase
YOR071C	__________	+1.08	291215	314421	transport	thiamine transporter (putative)
YPL049C	DIG1______	+1.16	698450	810102	invasive growth	MAP kinase-associated protein
YPR142C	__________	-1.05	483618	459955	unknown	unknown
YBR119W	MUD1______	+1.08	267753	287955	mRNA splicing	U1 snRNP A protein
YCR057C	PWP2______	-1.15	221044	192225	cytoskeleton (putative)	unknown
YDL239C	__________	+1.08	132766	144035	unknown	unknown
YDR358W	GGA1______	+1.30	148862	193191	secretion (putative)	unknown; binds ARF
YER057C	HIG1______	+1.36	780443	1059226	heat shock response	heat-induced protein
YGL049C	TIF4632___	+1.06	181966	192078	protein synthesis	mRNA cap-binding protein (eIF-4F) subunit
YGR160W	__________	+1.21	839142	1015169	unknown	unknown
YHR173C	__________	+1.04	220541	230107	unknown	unknown
YJL050W	MTR4______	-1.35	773331	574188	mRNA export	RNA helicase
YKL047W	__________	+1.10	266089	292202	unknown	unknown
YLL049W	__________	+1.15	423419	485379	unknown	unknown
YLR354C	TAL1______	+1.69	2045678	3464170	pentose phosphate cycle	transaldolase
YMR089C	YTA12_____	+1.47	161861	238493	protein folding	mitochondrial chaperonin
YNL141W	AAH1______	+1.09	978877	1068409	purine metabolism	adenine deaminase
YOL049W	GSH2______	+1.54	896437	1382877	glutathione biosynthesis	glutathione synthetase
YOR259C	RPT4______	+1.42	506125	718567	protein degradation	26S proteasome regulatory subunit
YPL238C	__________	+1.13	313675	355117	unknown	unknown
YJR160C	__________	+1.03	115685	118853	unknown	unknown; similar to maltose permeases (maltose/H+
YBL059W	__________	+1.00	199785	199963	unknown	unknown
YDL061C	RPS29B____	-1.64	8066973	4916106	protein synthesis	ribosomal protein S29B
YDR188W	CCT6______	-1.03	1397629	1358504	protein folding	cytoplasmic chaperonin complex
YFL052W	__________	-1.23	155669	126175	unknown	unknown; similar to MAL regulatory proteins
YGL252C	RTG2______	+1.22	581795	710661	interorganelle communication	unknown
YHR004C	NEM1______	+1.19	244284	291133	nuclear organization and biogenesis	phosphatase
YIL151C	__________	-1.07	741595	691152	unknown	unknown; similar to mitochondrial aldehyde dehydrogenase
YJR028W	__________	+1.34	3210692	4307625	transposition	TyA gag protein
YKR025W	RPC37_____	-1.44	869307	602081	transcription	RNA polymerase III 37 kDa subunit
YLR182W	SWI6______	-1.10	301331	272866	cell cycle	transcription factor
YML053C	__________	+1.31	308611	403763	unknown	unknown
YNR004W	__________	+1.19	179868	213941	unknown	unknown; similar to bovine interferon gamma precursor
YOR083W	__________	-1.38	181900	131989	unknown	unknown
YPR154W	__________	-1.06	105276	99187	unknown	unknown; similar to several SH3 domain-containing proteins
YBR131W	CCZ1______	+1.09	140182	152809	calcium, caffeine, and zinc sensitivity	unknown
YDR003W	__________	+1.30	124933	162861	unknown	unknown; similar to Ybr005p
YDR368W	YPR1______	-1.03	659629	643353	unknown	unknown; similar to aldo-keto reductases
YER067W	__________	+1.06	163454	172706	unknown	unknown
YGL061C	DUO1______	-1.12	227556	203873	mitosis	unknown; spindle protein
YGR168C	__________	+1.19	169349	201353	unknown	unknown; similar to human vasoactive intestinal peptide
YHR185C	ADY1______	+1.04	106133	110435	meiosis (putative)	unknown
YJL062W	LAS21_____	+1.17	354695	416472	unknown	major facilitator superfamily
YKL059C	__________	+1.19	221243	262517	unknown	unknown; similar to members of the chaperonin-containing
YLL061W	MMP1______	-1.09	773323	709554	transport, amino acid	high affinity S-methylmethionine permease
YLR366W	__________	-1.04	99395	95651	unknown	unknown
YMR101C	SRT1______	-1.06	122668	115299	protein glycosylation	cis-prenytransferase (putative)
YNL153C	GIM3______	+1.06	618082	656905	protein folding	prefoldin subunit 4
YOL059W	GPD2______	+1.23	586122	719427	glycerol metabolism	glycerol-3-phosphate dehydrogenase
YOR271C	__________	+1.15	1024007	1173566	unknown	unknown; similar to rat tricarboxylate carrier
YBL071C	__________	-1.21	305761	253161	unknown	unknown
YDL073W	__________	+1.01	135026	136754	unknown	unknown
YDR200C	__________	+1.13	204240	231787	unknown	unknown
YFL064C	__________	+1.36	209204	283793	unknown	unknown; similar to other subtelomerically-encoded proteins
YGR001C	__________	-1.17	878921	753051	unknown	unknown
YHR015W	MIP6______	-1.03	151717	147945	mRNA export, putative	RNA-binding protein
YIL162W	SUC2______	-1.01	434080	431460	sucrose utilization	invertase
YJR040W	GEF1______	+1.04	426401	443938	transport	CLC chloride channel, iron transporter
YKR037C	SPC34_____	+1.09	278988	304553	cytoskeleton	spindle pole body component
YLR194C	__________	+9.27	745390	6909192	unknown	unknown
YML064C	TEM1______	+1.06	351816	372803	cell cycle	GTP-binding protein, RAS superfamily
YMR296C	LCB1______	+1.36	805674	1098409	sphinogolipid metabolism	serine palmitoyltransferase component
YNR016C	ACC1______	+1.03	138170	141803	fatty acid metabolism	acetyl-CoA carboxylase
YOR095C	RKI1______	-1.65	1279558	775242	pentose phosphate cycle	ribose-5-phosphate ketol-isomerase
YPL071C	__________	+1.36	314561	426709	unknown	unknown
YPR162C	ORC4______	-1.03	261531	253302	DNA replication	origin recognition complex 56 kD subunit
YBR143C	SUP45_____	-1.12	868314	776469	protein synthesis	translation release factor eRF1 subunit
YCR081W	SRB8______	-1.01	120387	118713	transcription	RNA polymerase II mediator subunit
YDR015C	__________	+1.03	107348	111053	unknown	unknown
YDR380W	__________	+1.12	222204	248776	unknown	unknown; similar to pyruvate decarboxylase, pyruvate
YER077C	__________	+1.25	207671	259072	unknown	unknown; similar to class I tRNA synthetases
YGL073W	HSF1______	+1.14	140921	160368	heat shock	transcription factor
YGR180C	RNR4______	+2.12	877073	1860144	DNA replication	ribonucleotide reductase
YHR197W	__________	-1.25	510297	406979	unknown	unknown
YJL074C	SMC3______	-1.09	232586	214342	chromatin structure	cohesin
YKL071W	__________	+1.32	200345	264764	unknown	unknown
YLR006C	SSK1______	+1.34	227147	305353	signaling	two-component pathway
YLR378C	SEC61_____	+1.89	1278215	2415834	secretion	ER protein translocation complex subunit
YMR113W	FOL3______	+2.21	316084	698864	folate metabolism	dihydrofolate synthetase
YNL165W	__________	+1.04	304490	315920	unknown	unknown
YOL071W	__________	+1.34	259262	346811	unknown	unknown
YOR283W	__________	+1.20	645900	777084	unknown	unknown; similar to phosphoglycerate mutases
YPL259C	APM1______	+1.55	354387	549829	secretion	AP-1 complex subunit
YBL083C	__________	+1.09	325992	355852	unknown	unknown
YDL085W	__________	-1.06	139323	131604	unknown	unknown; similar to NADH dehydrogenase (ubiquinone)
YFR008W	__________	-1.07	600580	563020	unknown	unknown
YGR013W	SNU71_____	+1.05	186351	196419	mRNA splicing	U1 snRNP protein
YHR026W	PPA1______	+1.07	3192932	3430090	vacuolar acidification	vacuolar H+-ATPase proteolipid protein
YIL173W	VTH1______	+1.39	326596	454843	vacuolar protein targeting	unknown; similar to Vps10p
YJR052W	RAD7______	+1.40	288309	402254	DNA repair, nucleotide excision	NEF4 component
YKR049C	__________	+1.96	223472	437531	unknown	unknown
YLR206W	ENT2______	+1.06	96680	102280	endocytosis (putative)	unknown; epsin homolog
YML076C	__________	+1.17	170542	200173	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YNR028W	CPR8______	-1.10	392282	357919	protein folding	peptidyl-prolyl cis-trans isomerase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOR107W	RGS2______	+1.02	226589	231082	signaling	GTPase-activating protein (GAP) for Gpa2p
YPL083C	SEN54_____	+1.34	456205	610164	tRNA splicing	splicing endonuclease subunit
YPR174C	__________	-1.07	157906	147531	unknown	unknown; similar to C. elegans nuclear lamin
YBR155W	CNS1______	-1.41	730958	517136	unknown	unknown; similar to Sti1p; suppresses cyclophilin mutant
YCR092C	MSH3______	-1.02	251528	246325	DNA repair, mismatch	MutS homolog
YDR027C	LUV1______	-1.03	540058	525229	vacuole biogenesis (putative)	unknown
YDR392W	SPT3______	+1.00	340966	342249	chromatin structure	histone acetyltransferase complex subunit
YER088C	DOT6______	+1.12	388028	436112	silencing (telomere)	nuclear protein with Myb DNA-binding domain
YGL085W	__________	+1.02	254262	259648	unknown	unknown; similar to Staphylococcus hyicus thermonuclease
YGR192C	TDH3______	+1.16	15927761	18462379	glycolysis	glyceraldehyde-3-phosphate dehydrogenase 3
YHR209W	__________	+1.06	4273996	4510244	unknown	unknown; similar to Yer175p
YJL086C	__________	+1.10	241329	264728	unknown	unknown
YKL083W	__________	-1.10	236732	215667	unknown	unknown
YLR018C	POM34_____	-1.15	609825	529467	nuclear protein targeting	nuclear pore protein
YLR390W	ECM19_____	+1.28	248489	319216	cell wall biogenesis	unknown
YMR124W	__________	+1.17	695557	813596	unknown	unknown
YNL177C	__________	-1.04	532123	510626	unknown	unknown
YOL083W	__________	+1.10	162989	178956	unknown	unknown
YOR295W	__________	+1.13	326092	367280	unknown	unknown
YPL271W	ATP15_____	+1.59	510023	812183	ATP synthesis	F1-ATP synthase epsilon subunit
YAL002W	VPS8______	-1.28	234551	183095	vacuolar protein targeting	unknown
YBR167C	POP7______	-1.24	217006	175013	rRNA and tRNA processing	RNase P and RNase MRP subunit
YCR104W	PAU3______	-1.01	198468	196009	unknown	unknown; similar to bovine alcohol dehydrogenase
YDR038C	ENA5______	+1.00	360590	360706	transport	Na(+) ATPase
YDR405W	MRP20_____	-1.17	241742	206736	protein synthesis	ribosomal protein, mitochondrial L23
YER100W	UBC6______	-1.36	576842	425326	protein degradation, ubiquitin-mediated	ubiquitin-conjugating enzyme
YGL098W	__________	-1.10	237117	216251	unknown	unknown
YGR205W	__________	-1.13	154900	137281	unknown	unknown; similar to E. coli putrescine transport protein
YIL002C	INP51_____	+1.19	258675	306718	phosphatidylinositol metabolism	phosphatidylinositol 4,5-bisphosphate 5-phosphatase
YJL099W	CHS6______	+1.54	182022	280910	cell wall biogenesis	chitin biosynthesis
YKL096W	CWP1______	+1.66	1750592	2905450	cell wall protein	beta-1,6-glucan acceptor
YLR031W	__________	+1.15	125681	144514	unknown	unknown
YLR403W	SFP1______	+1.06	200984	212280	unknown	overexpression inhibits nuclear protein localization
YMR136W	GAT2______	+1.42	202457	286872	transcription (putative)	transcription factor (putative_; GATA zinc finger protein
YNL190W	__________	+1.51	2513462	3801684	unknown	unknown
YOL096C	COQ3______	+1.17	212474	248043	ubiquinone biosynthesis	3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase
YOR306C	__________	+2.04	355978	727887	unknown	unknown; similar to human X-linked PEST-containing
YPR001W	CIT3______	+1.03	135964	140118	TCA cycle	citrate synthase
YBL096C	__________	-1.08	128889	119443	unknown	unknown
YDL098C	SNU23_____	-1.03	236425	230115	mRNA splicing (putative)	U4/U6.U5 snRNP protein
YDR221W	__________	+1.10	180082	197418	unknown	unknown; similar to the beta subunit of human glucosidase
YEL002C	WBP1______	+1.30	271305	352586	protein glycosylation	oligosaccharyltransferase complex subunit
YFR021W	__________	+1.06	186568	198454	unknown	unknown
YGR026W	__________	+1.37	568485	780313	unknown	unknown
YHR039C	VMA10_____	-1.07	2120402	1987775	vacuolar acidification	vacuolar H-ATPase 13 kDa subunit
YIR009W	MSL1______	+1.12	205584	229545	mRNA splicing	U2 snRNP protein
YJR065C	ARP3______	+1.33	968253	1286324	cytoskeleton	actin-related protein
YKR062W	TFA2______	+1.04	379205	393639	transcription	TFIIE 43 kD subunit
YLR219W	__________	+1.12	174764	195758	unknown	unknown
YML089C	__________	-1.07	111935	104874	unknown	unknown
YNL002C	RLP7______	-1.14	1118905	981577	protein synthesis	ribosomal protein L7 (putative)
YNR041C	COQ2______	-1.02	385950	378351	ubiquinone biosynthesis	para-hydroxybenzoate polyprenyltransferase
YOR120W	GCY1______	+1.58	227382	359940	unknown	unknown; similar to mammalian aldo-keto reductases
YPL096W	PNG1______	+1.12	283974	318553	protein modification	peptide:N-glycanase
YPR187W	RPO26_____	-1.16	2668585	2304269	transcription	Shared subunit of RNA polymerases I, II, and III
YAL015C	NTG1______	-1.15	226602	196571	DNA repair	DNA glycosylase
YBR179C	FZO1______	-1.10	264500	241430	mitochondrial biogenesis	mitochondrial membrane GTPase
YCRX09C	__________	-1.30	305528	234550
YDR050C	TPI1______	-1.17	15881893	13518509	glycolysis	triosephosphate isomerase
YDR417C	__________	-1.37	8959390	6531726	unknown	unknown
YER112W	LSM4______	-1.15	632261	550144	mRNA splicing	U6 snRNP protein
YGL110C	__________	-1.03	429519	418764	unknown	unknown
YGR217W	CCH1______	+1.04	303623	315326	transport	(putative) Ca(2+) channel protein
YJL111W	CCT7______	+1.00	1349772	1353894	protein folding	cytoplasmic chaperonin complex
YKL107W	__________	+1.23	123445	151291	unknown	unknown
YLR041W	__________	-2.42	328641	135746	unknown	unknown
YLR413W	__________	-2.35	1185663	504891	unknown	unknown
YMR148W	__________	+1.40	229980	321509	unknown	unknown
YNL202W	SPS19_____	-1.08	143170	132148	sporulation	peroxisomal 2,4-dienoyl-CoA reductase
YOL106W	__________	-2.44	7918691	3247748	unknown	unknown
YOR318C	__________	-1.50	204129	135889	unknown	unknown
YPR013C	__________	+1.03	250763	258563	unknown	unknown; similar to mouse REX1 encoded transcription factor
YBL106C	SRO77_____	+1.11	123200	136802	secretion (putative)	unknown; homolog of Drosophila tumor suppressor l(2)gl
YCL013W	__________	+1.15	121257	139466
YDL110C	__________	+1.85	295033	544685	unknown	unknown
YDR233C	__________	-1.00	2184168	2183766	unknown	unknown
YEL014C	__________	-1.20	260437	216974	unknown	unknown
YFR032C	__________	+1.01	131169	132552	unknown	unknown
YGR036C	CAX4______	+1.10	160544	176160	cell wall biogenesis	unknown
YIR020C	__________	+1.09	170517	185779	unknown	unknown
YJR077C	MIR1______	+1.75	1152412	2021718	transport	mitochondrial phosphate transporter
YKR074W	__________	-1.12	603681	536914	unknown	unknown
YLR229C	CDC42_____	-1.09	1100572	1011057	signaling, filamentous or polarized growth	GTPase, Rho subfamily
YNL014W	__________	-1.05	721211	686471	unknown	unknown; similar to translation elongation factor Yef3p,
YNR053C	__________	-1.09	1171948	1072514	unknown	unknown; similar to human breast tumor-associated
YOR132W	VPS17_____	+1.50	347965	520639	vacuolar protein targeting	peripheral membrane protein
YPL108W	__________	+1.05	262863	276575	unknown	unknown
YPR199C	ARR1______	+1.28	301992	387363	transcription	basic leu zipper transcription factor
YAL027W	__________	-1.19	337948	284517	unknown	unknown
YBR191W	RPL21A____	-1.51	12133153	8025886	protein synthesis	ribosomal protein L21A
YCRX21C	__________	+1.11	311316	345302
YDR062W	LCB2______	+1.19	414440	492412	sphingolipid biosynthesis	serine C-palmitoyltransferase subunit
YDR429C	TIF35_____	-1.46	2154510	1478639	protein synthesis	translation initiation factor eIF3 subunit
YER123W	YCK3______	-1.34	407115	302918	cell proliferation	plasma membrane-bound casein kinase I
YGL122C	NAB2______	-1.02	108635	106810	mRNA processing	poly(A)+RNA binding protein
YGR229C	SMI1______	-1.09	471616	431188	cell wall biogenesis	may regulate glucan and chitin synthesis
YIL025C	__________	-1.22	169778	138851	unknown	unknown
YJL123C	__________	-1.14	316843	277479	unknown	unknown
YKL119C	VPH2______	-1.18	255678	217466	vacuolar acidification	vacuolar H+-ATPase assembly protein
YLR053C	__________	+1.01	125145	126653	unknown	unknown; similar to xylose isomerase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YNL214W	PEX17_____	+1.07	165947	177336	peroxisome biogenesis	peripheral membrane protein
YOL118C	__________	+1.13	144077	162230	unknown	unknown
YOR330C	MIP1______	+1.11	368939	410717	DNA replication	mitochondrial DNA polymerase catalytic subunit
YPR025C	CCL1______	+1.14	311747	355220	transcription	TFIIH subunit
YBR005W	__________	+1.48	249563	369487	unknown	unknown
YCL026C	FRM2______	+1.02	98959	101008	signaling, fatty acid-mediated	unknown
YDL122W	UBP1______	-1.02	199133	195462	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YEL025C	SRI1______	+1.06	284199	300006	unknown	unknown; interacts with SWI/SNF and RSC
YFR042W	__________	+1.63	229589	375344	unknown	unknown
YGR043C	__________	+1.70	113212	192860	unknown	unknown; similar to Tal1p
YHR060W	VMA22_____	+1.00	391540	392089	vacuolar acidification	vacuolar H+-ATPase assembly protein
YIR030C	DCG1______	+1.02	149879	153224	unknown	may be involved in catabolite repression
YJR090C	GRR1______	+1.04	189910	197390	glucose repression (and cell cycle)	cyclin F box protein
YKR086W	PRP16_____	-1.01	503426	500198	mRNA splicing	RNA helicase
YLR241W	__________	+1.37	215488	295832	unknown	major facilitator superfamily
YML110C	COQ5______	+1.55	728210	1127848	ubiquinone biosynthesis	methyltransferase
YNL026W	__________	+1.09	139342	152171	unknown	unknown
YNR065C	__________	+1.93	207638	400306	unknown	unknown; similar to Pep1p
YPL120W	VPS30_____	+1.11	202808	224504	vacuolar protein targeting	unknown?
YAL036C	FUN11_____	+1.03	380362	390259	unknown	unknown; similar to Xenopus laevis GTP-binding protein DRG
YBR203W	__________	+1.31	90049	117826	unknown	unknown
YDR074W	TPS2______	+1.35	201475	272412	trehalose metabolism	trehalose-6-phosphate phosphatase
YDR441C	APT2______	+1.11	400651	444892	purine metabolism	unknown; similar to adenine phosphoribosyltransferase
YER135C	__________	+1.10	92989	101882	unknown	unknown
YGL134W	PCL10_____	+1.05	218543	229490	cell cycle	cyclin (Pho85p)
YGR241C	YAP1802___	-1.01	257349	255602	endocytosis and secretion	clathrin assembly protein
YIL037C	__________	+1.08	137605	148473	unknown	unknown
YJL135W	__________	-1.02	95600	93506	unknown	unknown
YKL131W	__________	+1.01	97909	99195	unknown	unknown
YLR065C	__________	-1.28	696386	542741	unknown	unknown
YLR435W	__________	-1.25	896729	719940	unknown	unknown
YMR170C	ALD2______	+1.69	198556	336246	ethanol utilization	aldehyde dehydrogenase
YNL226W	__________	-1.03	115403	111840	unknown	unknown
YOL130W	ALR1______	-1.08	171050	158169	aluminum resistance	ion transporter, putative
YOR342C	__________	+1.21	550049	665730	unknown	unknown
YPR037C	__________	+1.34	567279	759722	unknown	unknown; similar to Erv1p and rat ALR protein
YBR015C	MNN2______	+1.13	496504	559594	protein glycosylation	Golgi alpha-1,2-mannosyltransferase (putative)
YCL038C	__________	+1.07	93423	99837	unknown	unknown
YDR257C	RMS1______	-1.13	319445	282474	transcription	(putative) transcriptional regulator
YEL037C	RAD23_____	-1.35	582198	431924	DNA repair, nucleotide excision	ubiquitin-like protein
YFR054C	__________	-1.02	105618	103551	unknown	unknown
YGR055W	MUP1______	+1.75	562537	984040	transport	methionine permease
YIR042C	__________	+1.53	157272	240209	unknown	unknown
YJR101W	__________	-1.03	121743	117776	unknown	unknown; similar to superoxide dismutase
YKR098C	UBP11_____	+1.16	161321	186391	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YLR253W	__________	-1.01	208646	206769	unknown	unknown; similar to Abc1p
YML121W	GTR1______	+1.08	407669	438308	phosphate transport	GTP-binding protein
YNL036W	NCE103____	+1.60	292305	467209	secretion, non-classical	unknown
YNR077C	__________	-1.08	88339	81578	unknown	unknown
YOR154W	__________	-1.00	238980	238343	unknown	unknown
YPL132W	COX11_____	+1.02	243232	248516	respiration	cytochrome-c oxidase assembly
YAL047C	SPC72_____	+1.03	192419	197881	cytoskeleton	spindle pole body component
YBR215W	HPC2______	+1.01	130744	131589	transcription	regulator of histone transcription
YDR086C	SSS1______	-1.02	1288221	1257888	secretion	ER protein translocation complex subunit
YDR453C	__________	+1.09	257760	280852	unknown	unknown; similar to Tsa1p
YER145C	FTR1______	-2.10	1112032	528728	transport	iron permease
YGL146C	__________	-1.02	122359	119947	unknown	unknown; similar to Bunyamwera virus RNA-directed RNA
YGR253C	PUP2______	-1.01	1340347	1321645	protein degradation	20S proteasome subunit(alpha5)
YIL049W	DFG10_____	+1.06	269139	286480	filamentous growth	unknown
YJL147C	__________	+1.22	216050	262800	unknown	unknown
YKL143W	LTV1______	-1.55	898697	581473	unknown	unknown; required for viability at low temperature
YLR077W	__________	+1.10	155922	171970	unknown	unknown
YLR447C	VMA6______	+1.15	2288244	2639025	vacuolar acidification	vacuolar H+-ATPase V0 domain 36 KD subunit
YMR180C	CTL1______	+1.73	225882	390705	unknown	RNA triphosphatase
YNL238W	KEX2______	+1.02	97395	99814	secretion	late Golgi endoproteinase
YOL142W	RRP40_____	+1.02	626835	638475	rRNA processing	exosome complex component
YOR352W	__________	+1.23	237501	291786	unknown	unknown
YPR049C	__________	+1.14	464981	527851	unknown	unknown
YBR027C	__________	-1.04	124768	120087	unknown	unknown
YCL050C	APA1______	-1.29	383671	296568	purine metabolism	ATP adenylyltransferase I
YDL144C	__________	+1.27	369946	468786	unknown	unknown
YDR265W	PEX10_____	+1.21	142362	172388	peroxisome biogenesis	integral membrane protein
YEL049W	PAU2______	+1.67	216924	363233	unknown	unknown; similar to members of the Srp1p/Tip1p family
YGR067C	__________	+1.09	109639	119282	unknown	unknown
YHR081W	__________	-1.46	757344	519612	unknown	unknown
YJR113C	__________	+1.03	462705	474490	protein synthesis	ribosomal protein, mitochondrial S7 (putative)
YLR262C	YPT6______	+1.05	367009	386326	secretion	GTP-binding protein, rab family
YNL048W	ALG11_____	+1.07	296744	316753	protein glycosylation	unknown
YOR166C	__________	+1.04	237860	247505	unknown	unknown
YPL144W	__________	+1.05	130446	137479	unknown	unknown
YAL061W	__________	+1.01	139496	141363	unknown	unknown; similar to alcohol/sorbitol dehydrogenase
YBR227C	MCX1______	+1.04	211293	220006	protein folding	chaperone, mitochondrial (putative)
YDR098C	GRX3______	+1.42	927034	1313450	oxidative stress response	glutaredoxin
YDR465C	RMT2______	-1.23	397259	323301	arginine metabolism	arginine methyltransferase
YER155C	BEM2______	+1.05	90794	94959	bud emergence	GTPase-activating protein for Rho1p
YGL158W	RCK1______	+1.00	110313	110677	unknown	protein kinase
YGR265W	__________	-1.12	250832	224557	unknown	unknown
YIL061C	SNP1______	-1.03	241639	235469	mRNA splicing	U1 snRNP protein
YJL159W	HSP150____	-1.07	11208963	10480843	heat shock response	secreted glycoprotein of HSP family
YKL155C	__________	-1.03	452474	438549	unknown	unknown
YLR089C	__________	-1.11	600035	540050	unknown	unknown; similar to alanine aminotransferase
YLR459W	CDC91_____	+1.03	137878	141772	unknown	unknown; major facilitator superfamily
YMR192W	__________	+1.22	182891	222343	unknown	unknown; similar to mouse Tbc1 protein
YNL250W	RAD50_____	+1.08	122503	132543	DNA repair	DNA binding protein
YOL154W	__________	-1.05	208411	198901	unknown	unknown; similar to Sartorya fumigata Asp FII
YOR364W	__________	+1.01	120133	121264	unknown	unknown
YPR061C	__________	+1.14	142343	161985	unknown	unknown; similar to E. coli DnaJ and other DnaJ-like
YBR039W	ATP3______	+1.52	1194487	1812080	ATP synthesis	mitochondrial F1F0 ATP synthase subunit
YCL062W	__________	+1.25	216444	270273
YDL156W	__________	-1.02	111997	110330	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YDR277C	MTH1______	+1.33	131038	174136	hexose transport	transcriptional repressor
YEL060C	PRB1______	+2.47	219583	542648	protein degradation	vacuolar protease B
YGR079W	__________	-1.32	567587	429718	unknown	unknown
YHR093W	AHT1______	-1.09	129770	119220	unknown	unknown
YJR125C	ENT3______	-1.66	728525	438860	endocytosis (putative)	unknown; epsin homolog
YLR273C	PIG1______	-1.11	130723	117850	glucose repression	(putative) Glc7p regulatory subunit
YMR012W	CLU1______	-1.07	1523718	1423501	protein synthesis	translation initiation factor eIF3 subunit
YNL058C	__________	+1.85	666884	1234877	unknown	unknown
YOR178C	GAC1______	+1.04	184511	192691	glycogen metabolism	Glc7p regulatory subunit
YPL156C	__________	+1.42	367231	520561	unknown	unknown
YAR007C	RFA1______	+1.08	175498	189846	DNA replication	replication factor A, 69 kD subunit
YBR239C	__________	-1.16	220181	190596	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YDR108W	GSG1______	+1.03	192508	198374	meiosis	unknown
YDR477W	SNF1______	-1.05	352399	336725	glucose derepression	protein kinase
YER165W	PAB1______	+1.12	2580637	2901009	mRNA 3'-end processing	cleavage/polyadenylation factor CF IA component
YGL170C	__________	-1.25	199864	160176	unknown	unknown; similar to phosphoribulokinase precursor
YGR277C	__________	+1.05	396606	415296	unknown	unknown; similar to Ctr1p
YIL071C	__________	+1.13	206080	232429	unknown	unknown
YJL171C	__________	+4.03	245143	988176	unknown	unknown
YKL167C	MRP49_____	-1.17	315562	270730	protein synthesis	ribosomal protein, mitochondrial large subunit
YLR101C	__________	-1.42	1559772	1096292	unknown	unknown
YMR203W	TOM40_____	+1.14	763821	869938	mitochondrial protein targeting	outer membrane translocase component
YNL262W	POL2______	-1.03	117789	113911	DNA replication	polymerase epsilon catalytic subunit
YOL166C	__________	-1.07	129921	121005	unknown	unknown
YOR376W	__________	-1.01	117170	115856	unknown	unknown; similar to Na+/K+-exchanging ATPases
YPR073C	LTP1______	+1.32	645813	851503	unknown	protein phosphatase
YBR051W	__________	-1.00	106785	106298	unknown	unknown
YCLX01W	__________	-1.11	430961	388103
YDL168W	SFA1______	+1.07	710494	758255	formaldehyde metabolism	long-chain alcohol dehydrogenase
YDR289C	RTT103____	-1.04	287900	277712	transposition (putative)	unknown; similar to Spt8p
YEL072W	__________	+1.26	150179	189533	unknown	unknown
YGR091W	PRP31_____	+1.03	196505	201679	mRNA splicing	U4/U6, U5 snRNP protein
YHR105W	__________	-1.25	148030	118660	unknown	unknown; similar to Grd19p and bacterial helix-turn-helix
YJR137C	ECM17_____	+1.11	139232	153890	cell wall biogenesis	unknown
YLR285W	__________	-1.01	609525	601550	unknown	unknown
YMR024W	MRPL3_____	+1.16	297624	345915	protein synthesis	ribosomal protein, mitochondrial L3
YNL070W	TOM7______	-1.05	270204	257133	mitochondrial protein targeting	small subunit of translocase
YOR190W	SPR1______	-1.04	190785	183055	sporulation	exo-1,3-beta-glucanase
YPL168W	__________	+1.15	174021	200070	unknown	unknown
YAR029W	__________	+1.10	99243	109331	unknown	unknown; similar to subtelomerically-encoded proteins
YBR251W	MRPS5_____	-1.18	339287	288294	protein synthesis	ribosomal protein, mitochondrial S5
YDR120C	TRM1______	-1.40	574229	409127	tRNA processing	tRNA methyltransferase
YDR489W	__________	+1.06	189316	200353	unknown	unknown
YER175C	__________	+1.27	152723	193808	unknown	unknown; similar to Yhr209p
YGL182C	__________	-1.05	103450	98365	unknown	unknown
YGR289C	MAL11_____	-1.17	147068	125643	transport	alpha-glucoside permease
YJL183W	MNN11_____	-1.02	791063	777505	unknown	mannosyltransferase complex subunit
YKL179C	__________	+1.17	233527	273527	unknown	unknown; similar to kinesin and human kinesin-related
YLR113W	HOG1______	+1.50	634313	952677	signaling, high osmolarity pathway	MAPK (mitogen-activated protein kinase)
YMR215W	__________	-1.22	536652	440934	unknown	unknown; similar to Gas1p
YNL274C	__________	+1.38	177523	244165	unknown	putative alpha-ketoisocaproate reductase
YOR012W	__________	-1.06	131065	124019	unknown	unknown
YOR388C	FDH1______	-1.11	165978	149283	unknown	unknown; similar to formate dehydrogenases
YPR085C	__________	+1.13	294710	331941	unknown	unknown
YBR063C	__________	+1.02	225620	231073	unknown	unknown; similar to phosphopanthethein-binding proteins
YCR001W	__________	+1.02	102464	104673	unknown	unknown
YDL180W	__________	+1.01	294350	297280	unknown	unknown
YDR301W	CFT1______	+1.03	132157	136419	mRNA 3'-end processing	cleavage/polyadenylation factor CF II component
YER006W	__________	-1.07	1619707	1513956	unknown	unknown; similar to mouse Mmr1p protein
YGR103W	__________	-1.15	1879629	1628971	unknown	unknown
YHR117W	TOM71_____	+1.01	738517	746330	mitochondrial protein targeting	outer membrane translocase component
YJR149W	__________	-1.24	187356	150822	unknown	unknown; similar to 2-nitropropane dioxygenase
YLR296W	__________	-1.54	161228	104768	unknown	unknown
YMR035W	IMP2______	+1.29	188591	243115	protein processing	mitochondrial inner membrane protease
YNL082W	PMS1______	-1.06	209485	198354	DNA repair	MutL homolog; mismatch repair
YOR200W	__________	+1.08	313039	339435	unknown	unknown
YPL180W	__________	-1.10	128544	116747	unknown	unknown
YBL002W	HTB2______	-1.29	197271	153394	chromatin structure	histone H2B
YBR263W	SHM1______	-1.24	594704	478852	one-carbon interconversion	serine hydroxymethyltransferase
YDL002C	NHP10_____	-1.38	456648	329842	chromatin structure	non-histone protein
YDR132C	__________	-1.16	226214	194376	unknown	unknown
YDR501W	PLM2______	-1.63	272091	167208	plasmid maintenance (putative)	unknown
YFL-TYB	TY2B______	-1.25	15695157	12535058
YGL194C	HOS2______	-1.09	226682	207293	chromatin structure	putative histone deacetylase
YIL093C	__________	-1.09	268168	246813	unknown	unknown
YJL195C	__________	+1.14	123169	140544	unknown	unknown
YKL191W	DPH2______	-1.26	684790	544764	diphthamide biosynthesis	unknown
YLR125W	__________	+1.00	101789	102114	unknown	unknown
YML002W	__________	+1.00	194208	194970	unknown	unknown
YMR227C	TAF67_____	+1.05	238925	249777	transcription	TFIID 67 kD subunit
YOR024W	__________	+1.13	194085	219596	unknown	unknown
YPL002C	SNF8______	+1.49	303856	453171	glucose derepression	unknown
YPR097W	__________	-1.00	565747	565496	unknown	unknown
YBR075W	__________	-1.08	524467	483988	unknown	unknown
YCR013C	__________	-1.11	14491276	13067833	unknown	unknown
YDL192W	ARF1______	+1.12	5393558	6034388	secretion	ADP-ribosylation factor
YDR313C	PIB1______	-1.10	308052	280076	signaling	phosphatidylinositol(3)-phosphate binding
YER015W	FAA2______	-1.09	207256	190018	fatty acid metabolism	acyl-CoA synthetase
YGL002W	ERP6______	+1.04	339606	352484	membrane trafficking; secretion (putative)	unknown
YGR113W	DAM1______	+1.08	197002	212050	unknown	unknown; interacts with Duo1p and Mps1p
YHR129C	ARP1______	+1.16	273773	316895	cytoskeleton	actin-related protein
YJL002C	OST1______	+1.22	570663	698861	protein glycosylation	oligosaccharyltransferase complex subunit
YKL002W	__________	+1.12	605313	679705	unknown	unknown
YLL002W	REM50_____	+1.04	162567	169853	diepoxybutane and mitomycin C resistance	unknown
YLR308W	CDA2______	+1.05	98080	103076	sporulation	chitin deacetylase
YMR046C	__________	+1.25	2807532	3511314	unknown	unknown
YNL094W	__________	+1.50	313489	471055	unknown	unknown
YOL002C	__________	+1.67	530610	886029	unknown	unknown
YOR212W	STE4______	-1.18	575256	487088	signaling, pheromone pathway	beta subunit of G protein
YPL191C	__________	+1.32	150629	198654	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YAR052C	__________	+1.17	168041	196748
YBL012C	__________	-1.02	128236	125700	unknown	unknown
YBR275C	RIF1______	-1.10	216688	197518	silencing	RAP1-interacting protein
YDL014W	NOP1______	-1.10	4373016	3969786	rRNA processing, 35S	fibrillarin homolog
YDR144C	MKC7______	-1.00	671732	668651	protein degradation	periplasmic aspartyl protease
YDR513W	TTR1______	+1.01	661580	667270	electron carrier	glutaredoxin
YFL011W	HXT10_____	-1.15	253029	219321	transport	hexose permease
YGL206C	CHC1______	+1.06	94640	99941	endocytosis and secretion	clathrin heavy chain
YHL010C	__________	+1.02	99662	101938	unknown	unknown
YIL104C	__________	-1.03	2274591	2202411	unknown	unknown
YJL207C	__________	+1.08	94789	101973	unknown	major facilitator superfamily
YKL203C	TOR2______	+1.04	96966	101296	signaling, cell cycle, meiosis and actin cytoskeleton organization	phosphatidylinositol 3-kinase
YLR137W	__________	+1.10	162060	177695	unknown	unknown
YMR239C	RNT1______	-1.31	241955	184595	rRNA processing	ribonuclease III
YNL296W	__________	+1.04	107839	112213	unknown	unknown
YOR036W	PEP12_____	+2.15	340987	732295	vacuolar protein targeting	t-SNARE
YPL014W	__________	+1.55	339449	525673	unknown	unknown
YPR109W	__________	+1.09	287373	313741	unknown	unknown
YBR086C	IST2______	+1.16	503068	583407	salt tolerance (putative)	unknown; similar to calcium and sodium channel proteins
YCR024C	__________	+1.26	150146	188797	protein synthesis	tRNA synthetase, mitochondrial, asparaginyl
YDL204W	__________	+1.09	103684	113045	unknown	unknown
YDR323C	PEP7______	+1.07	161530	173172	vacuolar protein targeting	vacuolar segregation protein
YER026C	CHO1______	-1.21	683841	562919	phospholipid metabolism	phosphatidylserine synthase
YGL014W	__________	-1.27	562445	443159	aging	Sir3p and Sir4p localization
YGR125W	__________	+1.17	308509	359653	unknown	unknown; sulfate permease family
YJL014W	CCT3______	-1.14	1139682	1003948	protein folding	cytoplasmic chaperonin complex
YKL013C	ARC19_____	+1.21	669179	810228	cytoskeleton	cortical actin patch integrity
YLL014W	__________	-1.10	257718	234425	unknown	unknown
YLR319C	BUD6______	+1.12	201647	226399	bud site selection, bipolar	actin-interacting protein
YMR056C	AAC1______	+1.84	170945	314952	transport	mitochondrial ADP/ATP translocator
YNL106C	INP52_____	+1.15	1191588	1369528	endocytosis (putative)	inositol polyphosphate 5-phosphatase
YOL014W	__________	-5.13	1049013	204556	unknown	unknown
YOR224C	RPB8______	-1.18	1661503	1410694	transcription	shared subunit of RNA polymerase I,II, and III
YPL203W	PKA3______	+1.22	298379	364505	signaling, nutrient control of cell growth	cAMP-dependent protein kinase catalytic subunit
YAR074C	__________	-1.01	1097292	1087104
YBL024W	NCL1______	-1.23	732048	595249	unknown	unknown; similar to human proliferating cell nucleolar antigen
YBR287W	__________	+1.62	308917	499693	unknown	unknown
YDL026W	__________	+1.42	115479	163404	unknown	unknown
YDR156W	RPA14_____	-1.04	385991	372869	transcription	RNA polymerase I subunit A14
YDR525W	__________	+1.13	107438	120992	unknown	unknown
YFL020C	PAU5______	+1.51	247292	373737	unknown	unknown; similar to members of the Srp1p/Tip1p family
YGL218W	__________	+1.18	151771	179638	unknown	unknown
YHL022C	SPO11_____	+1.15	119694	137240	meiosis, recombination	ds break formation complex catalytic subunit
YIL116W	HIS5______	+1.09	424166	462753	histidine biosynthesis	histidinol-phosphate aminotransferase
YJL219W	HXT9______	+1.20	163539	195724	transport	hexose permease
YKL215C	__________	+1.14	208773	237388	unknown	unknown; similar to Pseudomonas hydantoinases hyuA-hyuB
YLR149C	__________	+1.30	115286	150360	unknown	unknown
YML023C	__________	+1.01	180971	182386	unknown	unknown
YNL308C	KRI1______	-1.13	864547	767801	unknown	unknown; similar to Mgm1p
YOR048C	RAT1______	-1.03	843079	817408	transcription	exonuclease II
YPL026C	SKS1______	+1.04	286754	299162	glucose transport (putative)	protein kinase
YPR121W	THI22_____	+1.26	170179	214273	thaimine metabolism	unknown
YBR097W	VPS15_____	-1.02	105865	104208	vacuolar protein targeting	ser/thr protein kinase
YCR034W	FEN1______	-1.20	737391	617001	cell wall biogenesis	beta-1,3-glucan synthase subunit
YDL216C	__________	+1.19	148464	177407	unknown	unknown
YDR335W	MSN5______	+1.22	226270	275114	signaling	pheromone pathway
YER038C	__________	+1.41	144160	203169	unknown	unknown
YGL026C	TRP5______	+1.53	785041	1201292	tryptophan biosynthesis	tryptophan synthase
YGR137W	__________	+1.52	850019	1291175	unknown	unknown; similar to tomato extensin PIR:S14983
YHR150W	__________	+1.33	149712	199746	unknown	unknown
YJL026W	RNR2______	+2.12	799410	1698414	DNA replication	ribonucleotide reductase
YKL025C	PAN3______	+1.03	318032	327603	mRNA processing	Pab1p-dependent poly(A) ribonuclease subunit
YLL026W	HSP104____	+1.81	269515	487686	heat shock response /thermotolerance	heat shock protein
YLR331C	__________	+1.44	140936	202292	unknown	unknown
YMR068W	__________	+1.64	157269	258188	unknown	unknown; similar to mouse I kappa B gamma and p70
YNL118C	DCP2______	+1.03	268699	276256	respiration (putative)	unknown; suppresses pet mutant
YOL026C	__________	+1.54	418698	644241	unknown	unknown
YOR236W	DFR1______	+1.40	560586	786988	folate biosynthesis	dihydrofolate reductase
YPL215W	CBP3______	+1.07	362495	387307	respiration	cytochrome-c reductase assembly
YER187W	__________	-1.18	148372	125669	unknown	unknown; similar to killer toxin Khs1p
YBL036C	__________	+1.05	629578	658127	unknown	unknown; similar to Pseudomonas aeroginosa twitching motility protein
YBR299W	MAL32_____	-1.01	154643	153857	maltose metabolism	alpha-glucosidase
YDL038C	__________	-1.59	299829	189070	unknown	unknown
YDR168W	CDC37_____	+1.29	552660	712960	cell cycle	chaperone
YDR537C	__________	-1.24	202634	163278	unknown	unknown
YFL031W	HAC1______	+1.04	125547	131187	unfolded protein response	transcription factor
YGL229C	SAP4______	-1.26	190030	150746	cell cycle	Sit4p-associated protein
YHL033C	RPL8A_____	-1.38	11467811	8335616	protein synthesis	ribosomal protein L8A
YIL128W	MET18_____	+1.01	267694	269282	transcription and DNA repair	regulator of TFIIH
YJR007W	SUI2______	-1.19	1699787	1427331	protein synthesis	translation initiation factor eIF-2 alpha subunit
YKR002W	PAP1______	-1.00	393575	392590	mRNA polyadenylation	poly(A) polymerase
YLR159W	__________	+1.06	107908	113901	unknown	unknown
YMR263W	__________	+1.12	336239	377822	unknown	unknown
YNL320W	__________	+1.42	316305	450374	unknown	unknown; similar to S. pombe bem1/bud5 suppressor (Bem46+)
YOR060C	__________	+1.03	144694	149473	unknown	unknown
YPL038W	MET31_____	-1.23	304910	247563	sulfur amino acid metbolism	transcription factor
YPR133C	__________	+1.17	604071	708782	unknown	unknown
YBR109C	CMD1______	+1.34	1207501	1612488	signaling	calmodulin
YCR046C	IMG1______	-1.07	399603	372827	protein synthesis	ribosomal protein, mitochondrial
YDL228C	__________	+1.06	103173	108938	unknown	unknown; similar to Achlya klebsiana glutamate
YDR347W	MRP1______	-1.17	511686	437003	protein synthesis	ribosomal protein, mitochondrial small subunit
YER047C	SAP1______	-1.00	198956	198711	mating type switching	AAA family protein
YGL038C	OCH1______	+2.80	391609	1098167	protein glycosylation	membrane-bound mannosyltransferase
YGR149W	__________	+1.71	193334	331462	unknown	unknown; similar to hypothetical protein A-288
YHR162W	__________	-1.08	3054010	2831776	unknown	unknown
YJL038C	__________	-1.00	172270	171773	unknown	unknown
YKL036C	__________	-1.16	192592	166330	unknown	unknown
YLL038C	ENT4______	-1.00	126243	125991	endocytosis (putative)	unknown; epsin homolog
YLR343W	__________	+1.15	168590	194133	unknown	unknown; similar to Gas1p
YNL130C	CPT1______	+1.14	533404	610534	phospholipid metabolism	diacylglycerol cholinephosphotransferase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOL038W	PRE6______	+1.19	1934342	2308979	protein degradation	20S proteasome subunit (alpha4)
YOR248W	__________	+2.10	3192960	6710368	unknown	unknown
YPL227C	ALG5______	-1.02	869344	855845	protein glycosylation	UDP-glucose:dolichyl-phosphate glucosyltransferase
YBL048W	__________	+1.13	92889	105155	unknown	unknown
YDL050C	__________	-1.24	708721	573589	unknown	unknown
YDR178W	SDH4______	+1.62	307852	497530	TCA cycle, oxidative phosphorylation	succinate dehydrogenase anchor subunit
YFL041W	FET5______	+1.25	258223	322846	transport	iron transporter, multicopper oxidase
YGL241W	KAP114____	+1.02	223776	227609	nuclear protein targeting	karyopherin
YHL045W	__________	+1.13	131212	147716	unknown	unknown
YIL140W	SRO4______	+1.76	290371	512504	bud site selection, axial	unknown; plasma membrane protein
YJR018W	__________	+1.14	321189	367290	unknown	unknown
YKR014C	YPT52_____	-1.36	788257	581400	endocytosis	GTP-binding protein, rab family
YLR171W	__________	+1.13	299759	338677	unknown	unknown
YMR275C	BUL1______	+1.26	198784	251391	protein degradation, ubiquitin-mediated	unknown; binds Rsp5p ubiquitin ligase
YNL332W	THI12_____	+1.48	166224	245527	pyrimidine biosynthesis	unknown
YOR072W	__________	-1.00	117714	117246	unknown	unknown
YPL050C	MNN9______	-2.14	680137	317783	protein glycosylation	mannosyltransferase complex subunit
YPR143W	__________	-1.05	709059	674271	unknown	unknown
YBR120C	CBP6______	-1.01	172344	169825	protein synthesis, COB	translation activator of COB mRNA
YCR058C	__________	-1.03	91421	89020
YDL240W	LRG1______	-1.00	183391	182738	sporulation	GTPase-activating protein of the rho/rac family
YDR359C	VID21_____	-1.08	517199	478039	vacuolar protein targeting (putative)	unknown
YER058W	PET117____	+1.04	156628	162930	respiration	cytochrome c oxidase assembly factor
YGL050W	__________	+1.07	168869	180544	unknown	unknown
YGR161C	__________	-1.54	572018	372223	unknown	unknown
YHR174W	ENO2______	+1.17	15819104	18491005	glycolysis	enolase II
YJL051W	__________	-1.12	471203	421307	unknown	unknown
YKL048C	ELM1______	-1.01	691768	686150	pseudohyphal growth	protein kinase
YLL050C	COF1______	-1.07	326442	305019	cytoskeleton	cofilin
YLR355C	ILV5______	-1.44	5021155	3497586	isoleucine and valine biosynthesis	ketol-acid reductoisomerase
YMR090W	__________	+1.24	235619	291209	unknown	unknown; similar to malate dehydrogenases
YNL142W	MEP2______	+1.02	231084	235533	transport	ammonia permease
YOL050C	__________	+1.18	325837	383561	unknown	unknown
YOR260W	GCD1______	-1.05	763919	726713	protein synthesis	translation initiation factor eIF2b gamma subunit
YPL239W	YAR1______	-1.08	1215795	1121140	unknown	unknown
YJR161C	COS5______	+2.67	745547	1989174	unknown	unknown; similar to subtelomerically-encoded proteins
YBL060W	__________	+1.02	216911	220197	unknown	unknown
YDL062W	__________	-1.12	125264	112325	unknown	unknown
YDR189W	SLY1______	+1.14	557857	638032	secretion	SNARE docking complex subunit
YFL053W	DAK2______	+1.01	120976	122058	carbohydrate metabolism; stress response	dihydroxyacetone kinase
YGL253W	HXK2______	+1.21	4491416	5444971	glycolysis	hexokinase II
YHR005C	GPA1______	-1.58	1524469	964577	signaling, pheromone pathway	alpha subunit of G protein coupled to mating factor
YIL152W	__________	+1.15	562438	647804	unknown	unknown
YJR029W	__________	+1.16	15847924	18397336	unknown	unknown; similar to malate dehydrogenase
YKR026C	GCN3______	-1.27	2133405	1674322	protein synthesis	translation initiation factor EIF2B
YLR183C	__________	-1.19	749307	628635	unknown	unknown
YML054C	CYB2______	+1.26	181936	229369	lactate utilization	cytochrome b2
YMR287C	MSU1______	+1.02	172792	177036	mitochondrial biogenesis	component of 3'-5' exonuclease complex
YNR005C	__________	-1.02	136663	134245	unknown	unknown
YOR084W	__________	+1.08	257325	278795	unknown	unknown
YPL060W	__________	+1.22	207354	252886	unknown	unknown; similar to Mrs2p
YPR155C	NCA2______	+1.27	188633	240481	ATP synthesis	regulates Atp6p and Atp8p synthesis
YBR132C	AGP2______	+1.16	129228	150323	transport	general amino acid permease
YCR069W	SCC3______	+1.42	247503	351332	protein folding	peptidyl-prolyl cis-trans isomerase
YDR004W	RAD57_____	+1.20	230167	276972	DNA repair and recombination	RecA homolog
YDR369C	XRS2______	+1.06	150621	159800	DNA repair and recombinations	required for ds break repair
YGL062W	PYC1______	+1.21	320278	388888	TCA cycle	pyruvate carboxylase 1
YGR169C	__________	-1.00	322313	321988	unknown	unknown
YHR186C	__________	+1.22	467194	569380	unknown	unknown; similar to Cdc39p, has WD (WD-40) domain
YJL063C	MRPL8_____	-1.20	583323	486386	protein synthesis	ribosomal protein, mitochondrial L8
YKL060C	FBA1______	+1.17	15899878	18602794	glycolysis	aldolase
YLL062C	MHT1______	-1.26	542993	430035	sulfur amino acid metabolism	S-methylmethionine:homocysteine S-methyltransferase
YLR367W	RPS22B____	-1.59	7704392	4835109	protein synthesis	ribosomal protein S22B
YMR102C	__________	-1.09	159504	146962	unknown	unknown
YNL154C	YCK2______	-1.09	1009372	928531	unknown	protein kinase
YOL060C	AMI3______	-1.06	190804	179690	mitochondrial morphology (putative)	unknown
YOR272W	YTM1______	-1.17	718725	613139	cytoskeleton (putative)	microtubule-associated protein
YPL250C	ICY2______	+1.05	143567	150843	cytoskeleton (putative)	unknown
YMR317W	__________	-1.01	110923	110298	unknown	unknown
YBL072C	RPS8A_____	+1.04	15812252	16432175	protein synthesis	ribosomal protein S8
YDL074C	__________	-1.03	328293	320054	unknown	unknown
YDR201W	SPC19_____	-1.57	509522	324720	cytoskeleton	spindle pole body component
YFL065C	__________	+1.00	298111	298524	unknown	unknown; similar to other subtelomerically-encoded proteins
YGR002C	__________	+1.06	227404	240706	unknown	unknown; similar to Drosophila melanogaster transcription
YHR016C	YSC84_____	+1.33	273488	363759	unknown	unknown; similar to hypothetical protein YFR024c-a
YIL163C	__________	-1.06	164177	154512	unknown	unknown
YJR041C	__________	-1.10	183807	166542	unknown	unknown; similar to Podospora anserina NADH dehydrogenase
YKR038C	__________	+1.19	538929	643543	unknown	unknown; similar to Qri7p and Pasteurella haemolytica
YLR195C	NMT1______	+1.35	323187	435571	protein processing	N-myristoyltransferase
YML065W	ORC1______	-1.15	335558	292754	DNA replication	origin recognition complex 104 kD subunit
YMR297W	PRC1______	+2.14	682583	1458991	sporulation	carboxypeptidase Y
YNR017W	MAS6______	-1.09	846715	778639	mitochondrial protein targeting	inner membrane translocase component
YOR096W	RPS7A_____	-1.25	11552644	9209584	protein synthesis	ribosomal protein S7A
YPL072W	UBP16_____	+1.04	279893	292106	protein degradation, ubiquitin-mediated	putative deubiquitinating enzyme
YPR163C	TIF3______	-1.20	4119065	3420965	protein synthesis	translation initiation factor eIF4B
YBR144C	__________	-1.07	96169	90103	unknown	unknown
YCR082W	__________	+1.12	437425	490470	unknown	unknown
YDR016C	DAD1______	-1.16	298079	257181	unknown	unknown; localizes to spindles and spindle pole bodies
YDR381W	YRA1______	-1.03	1250839	1210936	mRNA processing	RNA annealing protein
YER078C	__________	-1.17	239072	204753	unknown	unknown; similar to E. coli X-Pro aminopeptidase II
YGL074C	__________	-1.03	99574	97074	unknown	unknown
YGR181W	TIM13_____	+1.08	624943	673325	mitochondrial protein targeting	inner membrane translocase subunit
YHR198C	__________	+1.04	264504	273982	unknown	unknown; similar to Yhr199p
YJL075C	__________	+1.00	573821	574873	unknown	unknown
YKL072W	STB6______	+1.02	205507	210173	unknown	binds Sin3p
YLR007W	__________	+1.01	546276	551043	unknown	unknown
YLR379W	__________	+1.33	163942	217817	unknown	unknown
YMR114C	__________	+1.72	206505	355413	unknown	unknown
YNL166C	BNI5______	+1.05	546695	574188	unknown	unknown; localizes to mother-bud neck
YOL072W	__________	+1.08	244897	264773	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOR284W	__________	+1.01	193488	195335	unknown	unknown
YPL260W	__________	+1.28	540564	693548	unknown	unknown
YBL084C	CDC27_____	+1.00	93954	93961	cell cycle	anaphase-promoting complex subunit
YDL086W	__________	-1.09	748690	689161	unknown	unknown
YFR009W	GCN20_____	-1.03	101074	97878	protein synthesis	activator of Gcn2p kinase; ABC superfamily
YGR014W	MSB2______	+1.89	540836	1022218	bud emergence	unknown
YHR027C	RPN1______	+1.02	583755	594427	protein degradation	26S proteasome regulatory subunit
YIL174W	__________	+1.37	144380	197510	unknown	unknown; similar to Yir040p
YJR053W	BFA1______	-1.13	147336	130532	unknown	unknown
YKR050W	TRK2______	+1.01	113026	114318	transport	potassium permease
YLR207W	HRD3______	-1.00	192100	191301	protein degradation	HMG-CoA reductase degradation
YML077W	BET5______	-1.13	446283	395296	secretion (putative)	unknown; suppresses bet3 mutation
YMR307W	GAS1______	+1.53	3914546	5981472	unknown	cell surface glycoprotein
YNR029C	__________	+1.10	437733	483014	unknown	unknown; similar to Rhodococcus sp. nitrile hydratase
YOR108W	__________	-1.16	757380	655111	unknown	unknown; similar to Leu4p
YPL084W	BRO1______	+1.02	442302	449476	unknown	unknown
YPR175W	DPB2______	+1.06	177412	187267	DNA replication	polymerase epsilon 80 kDa subunit
YBR156C	SLI15_____	-1.00	297462	296277	mitosis, chromosome segregation	unknown
YCR093W	CDC39_____	+1.04	363475	376430	transcription	general negative regulator
YDR028C	REG1______	+1.10	246394	270032	glucose repression	protein phosphatase regulator
YDR393W	SHE9______	-1.03	291150	283451	unknown	unknown
YER089C	PTC2______	+1.00	702733	702934	unknown	protein phosphatase
YGL086W	MAD1______	-1.19	656341	552822	cell cycle	spindle checkpoint complex subunit
YGR193C	PDX1______	+1.09	676443	736152	glycolysis	pyruvate dehydrogenase
YHR210C	__________	+1.08	178579	193405	unknown	unknown; similar to Gal10p, has strong similarity to
YJL087C	TRL1______	-1.14	327669	287273	tRNA splicing	tRNA ligase
YKL084W	__________	-1.07	285130	266808	unknown	unknown
YLR019W	PSR2______	-1.17	401123	342817	salt tolerance (putative)	phosphatase
YLR390W	SSR1______	+3.13	1439671	4505311	unknown	secretory stress response
YMR125W	STO1______	-1.17	235371	200800	glycolysis	large subunit of the nuclear CAP-binding protein complex
YNL178W	RPS3______	-1.08	14107010	13065316	protein synthesis	ribosomal protein S3
YOL084W	__________	-1.41	204101	144595	unknown	major facilitator superfamily
YOR296W	__________	-1.12	140755	125991	unknown	unknown; may be involved in bud site selection (YPD)
YPL272C	__________	+1.00	174445	174514	unknown	unknown
YAL003W	EFB1______	-2.12	8408258	3958103	protein synthesis	translation elongation factor EF1-beta
YBR168W	__________	-1.29	239975	185992	unknown	unknown
YCR105W	__________	-1.49	202465	135643	unknown	unknown; similar to bovine alcohol dehydrogenase
YDR039C	ENA2______	+1.03	264572	272921	transport	plasma membrane ATPase
YDR406W	PDR15_____	-1.59	314429	197316	drug resistance	putative transporter
YER101C	AST2______	-1.28	272653	212474	plasma membrane protein targeting	targets plasma membrane ATPase
YGL099W	__________	-1.19	186627	156599	unknown	unknown; similar to human possible GTP-binding protein HSR1
YGR206W	__________	-1.08	206490	191193	unknown	unknown
YIL003W	__________	-1.20	393967	327114	unknown	unknown; similar to E. coli MRP protein
YJL100W	__________	+1.49	178338	265637	unknown	unknown
YKL097C	__________	+1.06	92039	97703	unknown	unknown
YLR032W	RAD5______	+1.02	85466	87013	DNA repair	DNA helicase
YLR404W	__________	+1.24	185428	230423	unknown	unknown
YMR137C	PSO2______	+1.05	135743	142015	DNA repair	required for interstrand crosslink repair
YNL191W	__________	+1.47	199801	294644	unknown	unknown
YOL097C	WRS1______	-1.05	1668358	1595058	protein synthesis	tRNA ligase, tryptophan
YOR307C	SLY41_____	+1.16	391063	452737	secretion	unknown; suppresses ypt1 null
YPR002W	PDH1______	+1.12	127110	142346	proionate metabolism (putative)	unknown; prpD homolog
YBL097W	BRN1______	-1.25	139592	111472	chromosome maintenance	unknown; homolog of human BRRN1
YCL002C	__________	-1.06	162809	153651	unknown	unknown
YDL099W	__________	-1.08	571161	530901	unknown	unknown
YDR222W	__________	-1.25	270050	215713	unknown	unknown
YEL003W	GIM4______	-1.32	511967	387620	protein folding	chaperone; tubulin folding
YFR022W	__________	+1.13	136334	154433	unknown	unknown
YGR027C	RPS25A____	-1.25	15487803	12382145	protein synthesis	ribosomal protein S25A
YHR039C	__________	-1.15	310563	269528	unknown	unknown; similar to aldehyde dehydrogenases
YIR010W	__________	-1.04	393080	376186	unknown	unknown
YJR066W	TOR1______	+1.03	1003820	1036807	signaling, cell cycle and meiosis	phosphatidylinositol 3-kinase
YKR063C	LAS1______	-1.10	442134	401870	morphogenesis, cytoskeletal assembly, bud formation	(putative) gene expression
YLR220W	CCC1______	-1.01	447685	442625	ion homeostasis, Ca2+ and Mn2+	transmembrane transporter, putative
YML090W	__________	-1.00	112442	112376	unknown	unknown
YNL003C	PET8______	+1.52	373768	569629	mitochondrial protein targeting	mitochondrial carrier family
YNR042W	__________	-1.05	130736	124788	unknown	unknown
YOR121C	__________	+1.07	277674	298250	unknown	unknown
YPL097W	MSY1______	+1.03	235695	241812	protein synthesis	tRNA synthetase, mitochondrial, tyrosyl
YPR188C	MLC2______	+1.46	563017	819746	cytoskeleton	myosin light chain
YAL016W	TPD3______	-1.14	571854	501861	tRNA biosynthesis, cytokinesis, ceramide-mediated signaling	protein phosphatase (PP2A regulatory subunit)
YBR180W	DTR1______	-1.31	151408	115533	sporulation	dityrosine transporter
YCRX10W	__________	+1.05	280491	293401
YDR051C	__________	-1.03	333262	325006	unknown	unknown
YDR418W	RPL12B____	-1.45	13649917	9398751	protein synthesis	ribosomal protein L12B
YER113C	__________	-1.25	438729	349610	unknown	unknown; similar to Emp70p
YGL111W	__________	-1.33	833292	627447	unknown	unknown
YGR218W	CRM1______	+1.09	398802	435853	nuclear protein targeting	nuclear export factor
YIL014W	MNT3______	-1.00	297970	296959	protein glycosylation	mannosyltransferase
YJL112W	MDV1______	-1.02	288697	283253	unknown	unknown
YKL108W	SLD2______	-1.06	189594	178745	DNA replication	unknown; interacts with Dpb11p
YLR042C	__________	+1.48	206790	306206	unknown	unknown
YLR414C	__________	+4.48	852547	3823391	unknown	unknown
YMR149W	SWP1______	+1.21	928488	1122817	protein glycosylation	oligosaccharyltransferase complex subunit
YNL203C	__________	+1.02	140585	143395	unknown	unknown; similar to Bacillus subtilis
YOL107W	__________	+1.08	210616	227639	unknown	unknown; similar to Rnh70p and Pan2p
YOR319W	HSH49_____	+1.06	262784	279270	mRNA splicing	U2 snRNP protein; human SAP145 homolog
YPR014C	__________	+1.12	124653	139523	unknown	unknown
YBL107C	__________	+1.02	368381	375564	unknown	unknown
YCL014W	BUD3______	+1.02	110794	112628	cell polarity	bud site selection
YDL111C	RRP42_____	-1.16	704454	609832	rRNA processing	exoribonuclease
YDR234W	LYS4______	-1.20	224762	187484	lysine biosynthesis	homoaconitase
YEL015W	__________	+1.06	293866	310764	unknown	unknown
YGR037C	ACB1______	+1.81	998552	1810636	fatty acid metabolism	acyl-CoA ester transporter
YHR050W	SMF2______	+1.09	317677	347633	transport	(putative) manganese transporter
YJR078W	__________	+1.65	106914	176155	unknown	unknown; similar to indoleamine 2,3-dioxygenase
YKR075C	__________	+1.19	216657	258885	unknown	unknown; similar to Reg1p
YLR230W	__________	+1.18	292582	343942	unknown	unknown
YML100W	TSL1______	+1.78	231237	412506	trehalose metabolism	trehalose-6-phosphate synthase/phosphatase complex regulatory subunit
YNL015W	PBI2______	+3.70	268189	992114	unknown	protease inhibitor

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YNR054C	__________	-1.32	885861	671087	unknown	unknown
YOR133W	EFT1______	+1.09	6427040	7007403	protein synthesis	translation elongation factor eEF2
YPL109C	__________	+1.25	172957	215496	unknown	unknown
YPR200C	ARR2______	+1.05	175455	184097	arsenic resistance	unknown
YAL028A	__________	+1.02	98416	100352
YBR192W	RIM2______	+1.02	103489	105752	transport	mitochondrial carrier family
YDR063W	__________	-1.06	459076	431222	unknown	unknown
YDR430C	__________	-1.06	154333	146114	unknown	unknown; similar to class I family of aminoacyl-tRNA
YER124C	__________	-1.19	283254	238807	unknown	unknown
YGL123W	RPS2______	-1.35	5651491	4177565	protein synthesis	ribosomal protein S2
YGR230W	BNS1______	-1.14	236460	207200	unknown	unknown; similar to Spo12p; bypasses spo12/spo12 deletion
YIL026C	IRR1______	-1.03	187012	181002	unknown	colony morphology
YJL124C	LSM1______	-1.21	770009	636805	mRNA splicing (putative)	similar to snRNA-associated protein
YKL120W	OAC1______	-1.45	460171	316641	transport	oxaloacetate carrier
YLR054C	__________	+1.63	95837	156633	unknown	unknown
YMR159C	APG16_____	-1.07	129865	120975	autophagy	unknown; interacts with Apg5p and Apg12p; similar to human Sin3 complex component SAP1
YNL215W	__________	-1.03	453414	439564	unknown	unknown
YOL119C	__________	+1.13	211699	240226	unknown	unknown; similar to mammalian monocarboxylate
YOR331C	__________	+1.38	1862710	2579252	unknown	unknown
YPR026W	ATH1______	+1.01	114453	115685	trehalose metabolism	vacuolar acid trehalase
YBR006W	UGA5______	+1.34	158403	212000	GABA metabolism	succinate semialdehyde dehydrogenase
YCL027W	FUS1______	-1.40	226899	162100	mating; cell fusion	SH3 domain protein
YDL123W	__________	+1.56	226522	352328	unknown	unknown
YEL026W	SNU13_____	-1.32	3683575	2783593	mRNA splicing (putative)	U4/U6.U5 snRNP protein
YFR043C	__________	+1.06	299435	317373	unknown	unknown
YGR044C	RME1______	+1.35	306560	414361	meiosis	transcription factor
YHR061C	GIC1______	+1.36	214257	292302	bud emergence	binds Cdc42p
YIR031C	DAL7______	+1.19	175183	208112	allantoin utilization	malate synthase
YJR091C	JSN1______	+1.22	157752	192687	mitosis (putative)	unknown; suppresses tub2-150
YKR087C	__________	+1.05	414548	435893	unknown	unknown; similar to neutral zinc metallopeptidases
YLR242C	ARV1______	+1.15	217367	250145	unknown	unknown; similar to C.elegans R05H5.5 protein and Nup120p
YML111W	BUL2______	+1.05	160670	168781	protein degradation, ubiquitin-mediated (putative)	unknown; similar to Bul1p
YNL027W	CRZ1______	+1.03	1555184	1603723	(calcineurin) signaling	calcineurin-responsive transcription factor
YNR066C	__________	+1.04	126985	132100	unknown	unknown; similar to Pep1p
YOR143C	THI80_____	-1.02	353528	345106	thiamine metabolism	thiamine pyrophosphokinase
YPL121C	MEI5______	-1.24	135883	109293	meiosis, synapsis and recombination	unknown
YAL037W	__________	+1.03	110078	113143	unknown	unknown
YBR204C	__________	+1.21	134385	163135	unknown	unknown; similar to peroxisomal serine-active lipase
YDR075W	PPH3______	-1.15	283945	247094	cell cycle	protein phosphatase 2A
YDR442W	__________	+1.16	128493	148585	unknown	unknown
YER136W	GDI1______	+1.66	626825	1040670	secretion	regulatory; GDP dissociation inhibitor
YGL135W	RPL1B_____	-1.28	14346248	11223251	protein synthesis	ribosomal protein L1B
YGR242W	__________	-1.07	215690	201524	unknown	unknown
YIL038C	NOT3______	-1.04	338545	325244	transcription	general repressor
YJL136C	RPS21B____	-1.63	8156294	5013578	protein synthesis	ribosomal protein S21B
YKL132C	RMA1______	-1.06	238594	225706	unknown; mating (putative)	unknown; similar to folylpolyglutamate synthase
YLR066W	SPC3______	+1.02	654298	668212	secretion	signal peptidase subunit
YLR436C	ECM30_____	+1.20	798557	956227	cell wall biogenesis	unknown
YMR171C	__________	+1.15	306046	353369	unknown	unknown
YNL227C	__________	-1.03	220516	214174	unknown	unknown; similar to E. coli DnaJ and other DnaJ-like
YOL131W	__________	+1.02	101193	103271	unknown	unknown
YOR343C	__________	-1.08	113409	105391	unknown	unknown
YPR038W	__________	+1.19	277837	331676	unknown	unknown
YBR016W	__________	+1.60	372891	596146	unknown	unknown
YCL039W	__________	-1.00	101849	101822	unknown	unknown
YDL133W	__________	+1.22	301945	367567	unknown	unknown
YDR258C	HSP78_____	+1.49	228140	340899	protein folding	mitochondrial
YEL038W	UTR4______	-1.16	417527	361346	unknown	unknown
YFR055W	__________	-1.31	505997	386177	unknown	unknown; similar to E. coli cystathionine beta
YGR056W	RSC1______	-1.13	181786	160411	chromatin structure	chromatin remodeling complex subunit
YHR071W	PCL5______	-1.05	413646	392346	cell cycle	cyclin (Pho85p)
YIR043C	__________	+2.44	816084	1987686	unknown	unknown
YJR102C	__________	+1.15	151298	173563	unknown	unknown
YKR099W	BAS1______	-1.03	178756	174232	histidine, adenine biosynthesis	transcription factor
YLR254C	__________	-1.08	282324	262079	unknown	unknown
YML122C	__________	-1.03	159123	154776	unknown	unknown
YNL037C	IDH1______	+1.94	358263	696216	TCA cycle	isocitrate dehydrogenase
YOR155C	__________	+1.46	283725	413975	unknown	unknown
YPL133C	__________	+1.01	154808	155826	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YAL048C	__________	+1.07	115052	123678	secretion (putative)	unknown; similar to Ras1p, Ras2p, and other GTP-binding proteins of the RAS superfamily
YBR216C	__________	+1.09	171479	187481	unknown	unknown
YDR087C	RRP1______	-1.40	933885	669364	rRNA processing	unknown
YDR454C	GUK1______	-1.18	2064971	1744447	guanine nucleotide metabolism	guanylate kinase
YGL147C	RPL9A_____	-1.14	15727091	13851304	protein synthesis	ribosomal protein L9A
YGR254W	ENO1______	+1.17	15784253	18426244	glycolysis	enolase I
YIL050W	PCL7______	-1.01	581014	572882	cell cycle	cyclin
YJL148W	RPA34_____	-1.35	1138561	842018	transcription	RNA polymerase I subunit
YKL144C	RPC25_____	-1.27	851664	668835	transcription	RNA polymerase III 25 kD subunit
YLR078C	BOS1______	-1.02	575794	563113	secretion	ER-to-Golgi v-SNARE
YLR448W	RPL6B_____	-1.08	15362342	14277027	protein synthesis	ribosomal protein L6b
YMR181C	__________	+1.63	272786	445642	unknown	unknown
YNL239W	LAP3______	+1.63	369969	603135	protein degradation	aminopeptidase of cysteine protease family
YOL143C	RIB4______	-1.23	1647385	1333944	riboflavin biosynthesis	6,7-dimethyl-8-ribityllumazine synthase
YOR353C	__________	+1.32	338434	445693	unknown	unknown; similar to adenylate cyclases
YPR050C	__________	+1.19	451396	539163	unknown	unknown
YBR028C	__________	-1.01	295642	294114	unknown	unknown; similar to Ypk2p/Ykr2p and Ypk1p
YCL051W	LRE1______	-1.00	208793	207821	laminarase resistance	unknown
YDL145C	COP1______	-1.01	1147725	1133432	secretion	vesicle coat component
YDR266C	__________	-1.18	419775	356632	unknown	unknown
YEL050C	RML2______	+1.01	336373	340412	protein synthesis	ribosomal protein, mitochondrial L2
YGR068C	__________	-1.06	133930	126159	unknown	unknown; similar to Rod1p
YHR082C	KSP1______	+1.09	212966	231453	unknown	protein kinase
YJR114W	__________	-1.06	221373	207980	unknown	unknown
YMR001C	CDC5______	+1.07	282002	302456	cell cycle	G2/M protein kinase
YNL049C	SFB2______	+1.05	200841	211261	unknown	unknown; similar to Sec24p; binds Sed3p and Sec23p
YOR167C	RPS28A____	-1.28	10706063	8346140	protein synthesis	ribosomal protein S28A
YPL145C	KES1______	+1.36	880119	1194963	sterol metabolism	unknown
YAL062W	GDH3______	+1.19	174305	207734	glutamate biosynthesis	NADP-glutamate dehydrogenase
YBR228W	__________	+1.20	185359	222911	unknown	unknown
YDR466W	__________	+1.11	127016	141281	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YER156C	__________	-1.11	1458607	1317084	unknown	unknown
YGL159W	__________	+1.03	248753	256138	unknown	unknown
YGR266W	__________	-1.14	399715	350741	unknown	unknown
YIL062C	ARC15_____	-1.12	1061994	947238	cytoskeleton	cortical actin patch integrity
YJL160C	__________	-1.06	137538	129283	unknown	unknown; similar to members of the Pir1p/Hsp150p/Pir3p
YKL156W	RPS27A____	-1.82	6514606	3584704	protein synthesis	ribosomal protein S27A
YLR090W	XDJ1______	-1.07	336082	313458	unknown	unknown; similar to E.coli dnaJ
YLR460C	__________	+1.02	158729	161999	unknown	unknown; similar to Ycr102p
YMR193W	MRPL24____	-1.04	345307	331095	protein synthesis	ribosomal protein, mitochondrial L24
YNL251C	NRD1______	-1.10	172816	157372	transcription	elongation; also mRNA abundance
YOL155C	__________	+1.20	251148	301260	unknown	unknown; similar to S. cerevisiae glucan 1,4-alpha-glucosidase
YOR365C	__________	+1.04	174890	182631	unknown	unknown
YPR062W	FCY1______	-1.06	1865323	1758215	pyrimidine metabolism	cytosine deaminase
YBR040W	FIG1______	-1.07	105347	98354	mating	extracellular integral membrane protein
YCL063W	__________	+1.21	123954	149386	unknown	unknown; similar to plant aminocyclopropane-1-carboxylate
YDL157C	__________	+1.03	346217	358295	unknown	unknown
YDR278C	__________	+1.07	102339	109809	unknown	unknown
YEL061C	CIN8______	+1.38	780237	1074920	mitosis, spindle maintenance	kinesin related protein
YGR080W	TWF1______	+1.49	396026	588206	cytoskeleton	twifilin; actin monomer sequestering protein
YHR094C	HXT1______	-1.46	3496899	2399598	transport	hexose permease
YJR126C	__________	+1.05	427063	448208	unknown	unknown; similar to transferrin receptor
YLR274W	CDC46_____	-1.48	342341	231523	DNA replication	MCM initiator complex
YMR013C	SEC59_____	+1.19	256686	304863	protein glycosylation	mannosyltransferase (putative)
YNL059C	ARP5______	+1.14	381463	434683	cytoskeleton (putative)	actin-related protein
YOR179C	__________	+1.08	243300	261904	unknown	unknown
YPL157W	__________	+1.01	327855	329957	unknown	unknown
YAR008W	SEN34_____	-1.13	145690	129083	tRNA splicing	splicing endonuclease subunit
YBR240C	THI2______	-1.01	98401	97772	thiamine biosynthesis	transcription factor
YDR109C	__________	+1.07	218965	233620	unknown	unknown; similar to FGGY kinase family (GB:Z48758)
YDR478W	SNM1______	-1.15	196075	170856	rRNA processing	RNase MRP component
YGL171W	ROK1______	-1.42	648277	455753	rRNA processing	RNA helicase
YGR278W	__________	+1.02	263057	268355	unknown	unknown
YJL172W	CPS1______	+2.15	244132	525949	protein degradation	vacuolar carboxypeptidase yscS
YKL168C	KKQ8______	+1.18	163932	193816	unknown	protein kinase
YLR102C	APC9______	+1.02	160157	163939	cell cycle	anaphase-promoting complex subunit
YMR204C	__________	+1.10	182457	201586	unknown	unknown
YNL263C	YIF1______	+1.22	612433	746388	unknown	interacts with Yip1p; similar to NADH dehydrogenases
YOR001W	RRP6______	-1.19	550628	464338	rRNA processing, 5.8S	unknown
YOR377W	ATF1______	-1.03	265968	258137	acetate ester biosynthesis	alcohol acetyltransferase
YPR074C	TKL1______	-1.06	122959	115472	pentose phosphate cycle	transketolase
YBR052C	__________	+1.50	440928	659219	unknown	unknown; similar to Ycp4p, S. pombe obr1, and E. coli trp
YCLX02C	__________	-1.09	129013	118524
YDL169C	UGX2______	+1.42	113642	160969	unknown	unknown
YDR290W	__________	-1.01	108266	107148	unknown	unknown
YEL073C	__________	+1.26	126357	159215	unknown	unknown
YGR092W	DBF2______	+1.42	307861	437239	cell cycle	late mitosis; protein kinase
YHR106W	TRR2______	+1.11	924436	1023516	pyrimidine biosynthesis	thioredoxin reductase
YJR138W	IML1______	+1.00	129369	129942	plasmid maintenance (outative)	unknown
YLR286C	CTS1______	+1.20	2051285	2460944	cell wall biogenesis	endochitinase
YMR025W	__________	+1.30	181568	235521	unknown	unknown
YNL071W	LAT1______	+1.39	3378710	4694100	glycolysis	dihydrolipoamide S-acetyltransferase
YOR191W	RIS1______	+1.12	418482	469664	silencing	SNF2 family DNA-dependent ATPase
YPL169C	MEX67_____	-1.03	462906	447830	mRNA export	poly(A)+RNA binding protein
YAR030C	__________	+1.18	125057	147908	unknown	unknown
YBR252W	DUT1______	-1.23	721770	585317	pyrimidine metabolism	dUTP pyrophosphatase
YDR121W	DPB4______	-1.35	501233	370613	DNA replication	DNA polymerase epsilon subunit
YDR490C	PKH1______	+1.19	271986	324817	unknown	protein kinase (ser/thr)
YER176W	ECM32_____	-1.01	206174	203859	cell wall biogenesis	DNA helicase I
YGL183C	__________	+1.08	170368	183571	unknown	unknown
YGR290W	__________	-1.36	174288	128302	unknown	unknown
YIL082W	__________	-1.02	315122	308212	unknown	unknown
YJL184W	__________	-1.11	637436	573290	unknown	unknown
YKL180W	RPL17A____	+1.08	15821417	17165087	protein synthesis	ribosomal protein L17A
YLR114C	EFR4______	+1.18	590621	696823	unknown	unknown; similar to Drosophila bicaudal-D protein; null requires PHO85
YMR216C	SKY1______	+1.06	289601	306053	unknown	protein kinase
YNL275W	__________	-1.06	208986	197649	unknown	unknown; similar to human band 3 anion transport protein
YOR013W	__________	+1.10	206841	228243	unknown	unknown
YOR389W	__________	+1.20	244329	292897	unknown	unknown
YPR086W	SUA7______	+1.06	657064	694850	transcription	TFIIB subunit
YBR064W	__________	+1.04	109241	113655	unknown	unknown
YCR002C	CDC10_____	+1.17	858039	1002859	cytokinesis	septin
YDL181W	INH1______	+1.60	420895	674669	ATP synthesis	mitochondrial ATPase inhibitor
YDR302W	GPI11_____	-1.46	356147	243914	protein processing	GPI-phosphoethanolamine transferase subunit
YGR104C	SRB5______	-1.02	283937	277956	transcription	RNA polymerase II mediator subunit
YHR118C	ORC6______	-1.08	764416	706930	DNA replication	origin recognition complex, 50 KD subunit
YJR150C	DAN1______	-1.28	204585	159768	unknown	unknown; induced during anaerobic growth
YLR297W	__________	+1.44	209802	302158	unknown	unknown
YMR036C	MIH1______	+1.11	175013	194092	cell cycle	M-phase phosphatase
YNL083W	__________	-1.05	133221	126975	unknown	unknown; mitochondrial carrier (MCF) family
YOR201C	PET56_____	+1.10	326553	358442	rRNA processing, mitochondrial	ribose methyltransferase
YPL181W	__________	-1.07	112706	105478	unknown	unknown
YBL003C	HTA2______	-2.50	6937510	2772283	chromatin structure	histone H2A
YBR264C	YPT10_____	-1.60	460845	288607	unknown	unknown; similar to rab proteins and other small GTP-binding
YDL003W	MCD1______	-1.10	478639	434049	mitosis, sister chromatid cohesion	unknown
YDR133C	__________	-1.44	15453859	10750849	unknown	unknown
YDR502C	SAM2______	-1.29	2349886	1821997	methionine biosynthesis	regulator; S-adenosylmethionine synthetase
YFL001W	DEG1______	-1.24	220366	178196	tRNA processing	pseudouridine synthase
YGL195W	GCN1______	+1.02	120939	122826	protein synthesis	translation activator of GCN4
YHL002W	__________	+1.09	338025	370034	unknown	unknown
YIL094C	LYS12_____	-1.24	1835434	1481709	lysine biosynthesis	homo-isocitrate dehydrogenase
YJL196C	ELO1______	-1.10	914283	831593	fatty acid metabolism	fatty acid elongation protein
YKL192C	ACP1______	-1.02	944743	927887	fatty acid biosynthesis	mitochondrial acyl carrier protein
YLR126C	__________	-1.00	183275	182762	unknown	unknown; similar to Pseudomonas aeroginosa anthranilate
YML003W	__________	-1.04	120616	116123	unknown	unknown
YMR228W	MTF1______	+1.07	196420	209508	transcription	mitochondrial RNA polymerase specificity factor
YNL285W	__________	+1.06	177769	188086	unknown	unknown
YOR025W	HST3______	+1.12	400379	448204	silencing	unknown
YPL003W	ULA1______	+1.23	270463	333294	protein degradation, Rub1p-mediated	Rub1p activating protein
YPR098C	__________	+1.51	363495	550071	unknown	unknown
YBR076W	ECM8______	+1.36	130377	177225	cell wall biogenesis	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YCR014C	POL4______	-1.01	192514	191402	DNA repair	DNA polymerase IV
YDL193W	__________	+1.17	338929	397817	unknown	unknown
YDR314C	__________	-1.08	115757	107640	unknown	unknown
YER016W	BIM1______	-1.26	607143	483580	cytoskeleton	microtubule binding protein
YGL003C	CDH1______	-1.01	175813	174736	cell cycle	cyclin degradation
YGR114C	__________	-1.08	185763	172572	unknown	unknown
YHR130C	__________	+1.05	106079	111262	unknown	unknown
YJL003W	__________	+1.02	220993	224932	unknown	unknown
YKL003C	MRP17_____	-1.31	426883	326367	protein synthesis	ribosomal protein, mitochondrial small subunit
YLL003W	SFI1______	+1.07	215589	230952	unknown	unknown
YLR309C	IMH1______	-1.06	182136	171697	secretion (putative)	unknown; suppresses ypt6 ts mutation
YMR047C	NUP116____	+1.60	726616	1165181	nuclear protein targeting	nuclear pore protein
YNL095C	__________	+1.02	201564	205451	unknown	unknown; similar to Ecm3p
YOL003C	__________	+1.14	337502	383200	unknown	unknown
YOR213C	SAS5______	+1.18	264806	312678	silencing	unknown
YPL192C	__________	+1.02	251370	257442	unknown	unknown
YAR053W	__________	+1.10	139675	153657	unknown	unknown
YBL013W	FMT1______	-1.06	116901	110684	tRNA processing	met-tRNA formyltransferase
YBR276C	PPS1______	+1.00	363859	364748	unknown	protein phosphatase
YDL015C	__________	+1.07	852270	912632	unknown	unknown; similar to rat synaptic glycoprotein SC2
YDR145W	TAF61_____	-1.21	2600544	2147028	transcription	TFIID 61 kDsubunit
YDR514C	__________	-1.21	519637	427823	unknown	unknown
YFL012W	__________	+1.06	120012	127023	unknown	unknown
YGL207W	SPT16_____	+1.15	397895	459468	chromatin structure	non-histone protein
YHL011C	PRS3______	+1.05	251598	264357	purine biosynthesis	ribose-phosphate pyrophosphokinase 3
YIL105C	__________	-1.20	5888840	4912252	unknown	unknown; similar to Ask10p and Ynl047p
YJL208C	NUC1______	-1.09	423522	390251	mitochondrial recombination	endonuclease
YKL204W	EAP1______	-1.02	116457	113947	translation	unknown; associates with translation initiation factor eIF4E
YLR138W	NHA1______	+1.42	259051	368321	transport (putative)	Na+/H+ antiporter
YML012W	ERV25_____	+1.20	520941	627037	secretion	vesicle coat component
YMR240C	CUS1______	+1.02	512508	521424	mRNA splicing	U2 snRNP protein
YNL297C	MON2______	-1.00	104367	104033	secretion (putative)	unknown; brefeldin A sensitive; monensin sensitive
YOR037W	CYC2______	+1.21	281519	341661	mitochondrial protein targeting	cytochrome c import factor
YPL015C	HST2______	+1.29	298447	386345	unknown	similar to Sir2p
YPR110C	RPC40_____	-1.06	1400534	1320084	transcription	RNA polymerase III 40 kD subunit
YBR087W	RFC5______	+1.01	416908	421163	DNA replication	DNA polymerase processivity factor
YCR024C	PMP1______	-1.16	1289581	1114397	H+ homeostasis	regulates plasma membrane H+-ATPase
YDL205C	HEM3______	-1.41	299891	212259	heme biosynthesis	phorphobilinogen deaminase (uroporphyrinogen synthase)
YDR324C	__________	-1.35	422469	311895	unknown	unknown; similar to G-protein beta subunits
YER027C	GAL83_____	+1.02	407424	417226	glucose repression	component of Snf1 complex
YGL015C	__________	-1.10	145854	132377	unknown	unknown
YGR126W	__________	+1.04	107868	112406	unknown	unknown
YHR140W	__________	-1.13	127839	112670	unknown	unknown
YJL015C	__________	+1.06	237446	252670	unknown	unknown
YKL014C	__________	-1.12	423595	376688	unknown	unknown
YLL015W	BPT1______	+1.08	283500	304888	transport	bile pigment transporter
YLR320W	__________	+1.04	96295	100564	unknown	unknown
YMR057C	__________	-1.13	116382	103184	unknown	unknown
YNL107W	YAF9______	-1.06	302466	284941	unknown	unknown; similar to human AF-9 protein
YOL015W	__________	-1.01	128781	127273	unknown	unknown
YOR225W	__________	-1.01	366151	361990	unknown	unknown
YPL204W	HRR25_____	+1.33	760732	1008568	DNA repair	casein kinase I isoform
YBL025W	RRN10_____	-1.00	158178	158055	transcription	component of upstream activation factor complex (UAF)
YBR288C	APM3______	-1.09	259713	239259	vacuolar protein targeting	AP-3 complex subunit
YDL027C	__________	+1.65	226067	372914	unknown	unknown
YDR157W	__________	-1.18	345343	292821	unknown	unknown
YDR526C	__________	-1.09	265149	243970	unknown	unknown
YFL021W	GAT1______	+1.21	206356	249099	nitrogen catabolism	transcription factor
YGL219C	__________	+1.14	268610	306183	unknown	unknown; similar to Mycoplasma genitalium threoninyl-tRNA
YHL023C	__________	+1.11	242564	268702	unknown	unknown
YIL117C	__________	+3.84	358672	1377829	unknown	unknown
YJL220W	__________	+1.16	110567	128606	unknown	unknown; similar to alpha-D-glucosidase (maltase)
YKL216W	URA1______	-2.57	3013258	1170682	pyrimidine biosynthesis	dihydroorotate dehydrogenase
YLR150W	STM1______	-1.34	10858516	8096804	unknown	unknown; suppressor of tom1 and pop2 mutations
YMR252C	__________	+1.36	211012	286769	unknown	unknown
YNL309W	STB1______	-1.09	163724	149875	unknown	binds Sin3p
YOR049C	__________	-1.19	242746	203921	unknown	unknown
YPL027W	__________	-1.18	122072	103577	unknown	unknown
YPR122W	AXL1______	-1.07	98683	92006	bud site selection, axial	unknown; insulin-degrading enzyme homolog
YBR098W	MMS4______	+1.12	95833	107435	methylmethanesulfonate resistance	transcription activator (putative)
YCR035C	RRP43_____	-1.01	191587	189220	rRNA processing	exoribonuclease
YDL217C	TIM22_____	-1.06	326952	308535	mitochondrial protein targeting	inner membrane carrier protein
YDR336W	__________	-1.15	208487	180873	unknown	unknown
YGL027C	CWH41_____	+1.03	485281	500463	cell wall biogenesis	beta-1,6-glucan assembly protein
YGR138C	__________	+1.62	415549	672241	unknown	major facilitator superfamily
YHR151C	__________	+1.37	213037	291098	unknown	unknown
YJL027C	__________	+1.03	104795	107954	unknown	unknown
YKL026C	GPX1______	+1.10	95515	105023	glutathione metabolism (putative)	glutathione peroxidase (putative)
YLL027W	ISA1______	+1.34	407782	545094	unknown	unknown; Iron Sulfur Assembly -- IscA/NifA homolog
YLR332W	MID2______	+1.78	385350	686907	mating (putative)	unknown; mutant is sensitive to matin pheromone
YMR069W	__________	-1.06	107928	101986	unknown	unknown
YNL119W	__________	-1.19	1363118	1145134	unknown	unknown
YOL027C	__________	+1.15	375460	433634	unknown	unknown
YOR237W	HES1______	+1.01	151116	153280	sterol metabolism	unknown
YPL216W	__________	-1.07	262057	245096	unknown	unknown
YER188W	__________	-1.09	150825	139009	unknown	unknown
YBL037W	APL3______	+1.01	116959	118692	secretion	clathrin associated
YBR300C	__________	+1.01	148620	150259	unknown	unknown
YDL039C	__________	-1.75	304282	173768	unknown	unknown
YDR169C	STB3______	+1.14	226543	258358	unknown	binds Sin3p
YDR538W	PAD1______	-1.27	210289	166186	phenylacrylic acid resistance	phenylacrylic acid decarboxylase
YFL032W	__________	-1.11	173419	156316	unknown	unknown
YGL230C	__________	+1.13	117116	132922	unknown	unknown
YHL034C	SBP1______	+1.13	3046414	3448137	RNA processing	single stranded nucleic acid binding protein
YIL129C	TAO3______	+1.59	436238	694605	transcription (putative)	unknown; transcripiotnal activator of OCH1
YJR008W	__________	+1.39	203842	282424	unknown	unknown
YKR003W	__________	+1.31	312321	409340	unknown	unknown; similar to human oxysterol-binding protein
YLR160C	ASP3-4____	+17.13	118015	2022039	asparagine utilization	L-asparaginase II
YML034W	SRC1______	+1.21	136743	164888	unknown	unknown; induced at G2/M
YMR264W	CUE1______	+1.16	729668	846612	protein degradation, ubiquitin-mediated	recruits enzyme Ubc7p to membrane

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YNL321W	__________	+1.06	142739	150899	unknown	unknown; calcium permease family
YOR061W	CKA2______	-1.06	137530	129631	cell cycle	casein kinase II
YPL039W	__________	+1.11	158541	175326	unknown	unknown
YPR134W	MSS18_____	+1.24	269642	335117	mRNA splicing, COX1 mRNA	unknown
YCR047C	__________	-1.13	669021	589991	unknown	unknown; similar to rat methylglycine transferase
YDL229W	SSB1______	-1.03	116903	112960	translation	cytosolic HSP70
YDR348C	__________	-1.02	256155	251838	unknown	unknown
YER048C	CAJ1______	+1.01	866326	871801	unknown	unknown; similar to E. coli DnaJ
YGL039W	__________	-1.36	453666	333953	unknown	unknown
YGR150C	__________	+1.02	275841	281042	unknown	unknown; similar to Yjl083p
YHR163W	SOL3______	+1.36	854896	1158631	tRNA splicing, putative	unknown
YJL039C	NUP192____	+1.01	310138	312016	nuclear protein targeting	nuclear pore protein
YKL037W	__________	+1.10	152849	168698	unknown	unknown
YLL039C	UBI4______	-2.13	14908166	6996804	protein degradation, ubiquitin-mediated	ubiquitin
YLR344W	RPL26A____	-1.40	12126455	8632162	protein synthesis	ribosomal protein L26A
YMR080C	NAM7______	+1.41	477044	674348	mRNA decay	RNA helicase, putative
YNL131W	TOM22_____	-1.17	999246	853208	mitochondrial protein targeting	outer membrane translocase component
YOL039W	RPP2A_____	+1.17	15798264	18418488	protein synthesis	ribosomal protein P2A/L44, acidic
YOR249C	APC5______	-1.23	479069	389756	mitosis	anaphase-promoting complex subunit
YPL228W	CET1______	-1.21	462077	382686	mRNA capping	capping enzyme beta subunit, RNA 5'-triphosphatase
YHR219W	__________	+1.96	1679397	3297757	unknown	unknown; similar to other subtelomerically-encoded proteins
YBL049W	__________	+1.20	110843	133061	unknown	unknown
YDL051W	LHP1______	-1.06	868517	818573	tRNA processing	RNA binding protein
YDR179C	__________	+1.09	158807	173386	unknown	unknown
YFL042C	__________	+1.13	139542	157923	unknown	unknown; similar to Yhr080p
YGL242C	__________	+1.26	554503	698872	unknown	unknown; similar to ankyrin and coiled-coil proteins
YHL046C	__________	+1.65	297984	492394	unknown	unknown; similar to members of the Srp1p/Tip1p family
YIL141W	__________	-1.12	125481	111896	unknown	unknown
YJR019C	TES1______	+1.37	145278	199206	fatty acid metabolism	peroxisomal acyl-CoA thioesterase
YKR015C	__________	+1.04	155724	161604	unknown	unknown
YLR172C	DPH5______	-1.08	1290877	1197073	diphthamide biosynthesis	diphthamide methyltransferase
YMR276W	DSK2______	+1.37	933164	1282623	spindle pole body dupl	ubiquitin-like protein
YNL333W	SNZ2______	+2.01	276548	556115	unknown	unknown; induced in stationary phase
YOR073W	__________	-1.04	308927	298150	unknown	unknown
YPL051W	ARL3______	-1.01	310950	308091	unknown	unknown; Similar to ADP-ribosylation factor
YPR144C	__________	-1.07	416229	387274	unknown	unknown; similar to RNA polymerase beta subunit
YBR121C	GRS1______	+1.07	2666166	2839850	protein synthesis	tRNA synthase, glycyl
YCR059C	__________	+1.08	497267	537593	unknown	unknown
YDL241W	__________	-1.34	284493	211583	unknown	unknown
YDR360W	__________	-1.08	119114	110152	unknown	unknown
YER059W	PCL6______	+1.10	213406	234839	cell cycle	cyclin (Pho85p)
YGL051W	__________	+1.19	251984	300338	unknown	unknown
YHR175W	CTR2______	+1.32	510131	673617	transport	copper transporter
YJL052W	TDH1______	+1.16	15958128	18505538	glycolysis	glyceraldehyde-3-phosphate dehydrogenase 1
YKL049C	CSE4______	+1.06	562231	593615	chromatin structure, centromeric	histone-related
YLL051C	FRE6______	+1.09	481879	524183	unknown	unknown; similar to ferric reductase Fre2p
YLR356W	__________	+2.00	217902	434845	unknown	unknown; similar to Scm4p, possible Cdc4p-interacting
YMR091C	NPL6______	+1.76	759819	1339219	nuclear protein targeting	unknown
YNL143C	__________	-1.68	539124	320163	unknown	unknown
YOL051W	GAL11_____	-1.24	1666146	1338818	transcription	RNA polymerase II mediator subunit
YOR261C	RPN8______	+1.13	1548960	1751057	protein degradation	26S proteasome regulatory subunit
YPL240C	HSP82_____	+1.15	4868728	5606838	protein folding	HSP90 homolog
YJR162C	__________	+1.16	168279	194486	unknown	unknown; similar to subtelomerically-encoded proteins
YBL061C	SKT5______	+1.28	160063	204429	cell wall biogenesis	chitin synthase regulator
YDL063C	__________	-1.13	441993	391725	unknown	unknown
YDR190C	RVB1______	-1.08	1084878	1006970	unknown	unknown; similar to RUVB
YFL054C	__________	+1.04	119852	124678	unknown	unknown; similar to Fps1p and Ypr192p transmembrane channels
YGL254W	FZF1______	+1.20	173839	208552	sulfite metabolism	(putative) transcription factor
YIL153W	RRD1______	+1.18	421857	497394	drug resistance	unknown
YJR030C	__________	-1.13	315066	277739	unknown	unknown
YKR027W	__________	+1.25	189060	236440	unknown	unknown
YLR184W	__________	+1.03	95909	98958	unknown	unknown
YML055W	SPC2______	+1.17	451911	529417	secretion	signal peptidase subunit
YMR288W	__________	+1.02	104615	106543	unknown	unknown
YNR006W	VPS27_____	+1.32	234475	310086	vacuolar protein targeting	component of class E protein complex
YOR085W	OST3______	+1.06	363331	384221	protein glycosylation	oligosaccharyltransferase complex subunit
YPL061W	ALD6______	-1.10	2427823	2199568	ethanol utilization	acetaldehyde dehydrogenase
YPR156C	__________	+1.55	346868	538699	unknown	major facilitator superfamily
YBR133C	HSL7______	+1.04	258493	268950	cell cycle	Swe1p (kinase) regulator
YCR070W	__________	+1.42	508437	722766
YDR005C	MAF1______	+1.17	276794	324471	protein targeting (putative)	unknown
YDR370C	__________	-1.15	344350	300693	unknown	unknown
YER068W	MOT2______	+1.09	225289	244454	mating	transcriptional regulator
YGL063W	PUS2______	-1.04	149669	144478	tRNA processing	pseudouridine synthase
YGR170W	PSD2______	+1.05	213020	224323	phospholipid metabolism	phosphatidylserine decarboxylase 2
YHR187W	IKI1______	+1.11	356703	395519	killer toxin sensitivity	unknown
YJL064W	__________	-1.01	345239	343053	unknown	unknown
YKL061W	__________	+1.74	260736	452676	unknown	unknown
YLL063C	AYT1______	+1.32	180510	239045	unknown	transacetylase (putative)
YLR368W	__________	+1.10	199231	220126	unknown	unknown
YMR103C	__________	-1.02	109819	107914	unknown	unknown
YNL155W	__________	-1.04	549188	529666	unknown	unknown
YOL061W	PRS5______	+1.04	853261	888152	purine, pyrimidine, tryptophan and histidine biosynthesis	phosphoribosylpyrophosphate synthetase
YOR273C	__________	+1.44	168701	243231	unknown	unknown; similar to members of major facilitator superfamily
YPL251W	__________	-1.38	545929	396764	unknown	unknown
YMR318C	__________	+1.08	1615314	1740439	unknown	unknown; similar to alcohol-dehydrogenases
YBL073W	__________	-1.20	131076	109090	unknown	unknown
YDL075W	RPL31A____	-1.48	15474127	10441267	protein synthesis	ribosomal protein L31A
YDR202C	RAV2______	-1.39	564173	404487	vacuolar acidification (putative)	unknown; regulates V-ATPase
YFL066C	__________	-1.78	442787	249032	unknown	unknown; similar to other subtelomerically-encoded proteins
YGR003W	__________	-1.02	146399	143697	unknown	unknown
YHR017W	YSC83_____	+1.23	282501	347375	unknown	unknown; similar to S.douglasii YSD83
YIL164C	NIT1______	-1.01	237707	234244	unknown	nitrilase
YJR042W	NUP85_____	-1.04	121027	116252	nuclear protein targeting	nuclear pore protein
YKR039W	GAP1______	+1.12	134108	150728	transport	general amino acid permease
YLR196W	PWP1______	-1.16	766547	662556	unknown	unknown; similar to beta-transducin superfamily
YML066C	__________	-1.08	246016	227434	unknown	unknown
YMR298W	__________	+1.09	665459	726970	unknown	unknown
YNR018W	__________	+1.47	1035290	1522110	unknown	unknown
YOR097C	__________	+1.31	282889	370271	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YPL073C	__________	-1.01	123716	122422	unknown	unknown
YPR164W	KIM3______	-1.03	114287	111482	diepoxybutane and mitomycin C resistance	unknown
YBR145W	ADH5______	-1.12	917428	816649	glycolysis	alcohol dehydrogenase V
YCR083W	TRX3______	+1.01	203178	204931	oxidative stress response	thioredoxin, mitochondrial
YDR017C	KCS1______	-1.18	666988	566541	cell wall organization	(putative) transcription factor
YDR382W	RPP2B_____	+1.02	15852473	16206867	protein synthesis	ribosomal protein L45, acidic
YER079W	__________	+1.11	281471	313473	unknown	unknown
YGL075C	MPS2______	-1.02	173000	169050	cytoskeleton	spindle pole body duplication; nuclear envelope/ER protein
YGR182C	__________	+1.04	1042635	1085601	unknown	unknown
YHR199C	__________	+1.27	550404	698431	unknown	unknown; similar to Yhr198p
YJL076W	NET1______	+1.03	185988	191776	silencing	unknown
YKL073W	LHS1______	+2.09	355684	741795	secretion	chaperone; ER protein translocation
YLR008C	__________	-1.00	125941	125650	unknown	unknown
YLR380W	CSR1______	+1.29	455432	589562	unknown	unknown; multicopy suppressor of chs5 spa2 double mutant
YMR115W	__________	+2.32	333536	774141	unknown	unknown
YNL167C	SKO1______	+1.17	228436	267824	transcription	CREB-like transcriptional repressor
YOL073C	__________	+1.21	287309	346514	unknown	unknown
YOR285W	__________	+1.96	1020039	2002845	unknown	unknown; similar to Drosophila melanogaster heat shock
YPL261C	__________	+1.12	115542	129256	unknown	unknown
YBL085W	BOI1______	-1.03	91173	88283	bud growth	binds Bem1p
YDL087C	LUC7______	-1.10	147047	133573	mRNA processing (putative)	unknown; synthetic lethal with cap-binding complex
YFR010W	UBP6______	+1.09	617128	669932	protein degradation, ubiquitin-mediated	deubiquitinating enzyme (putative)
YGR015C	__________	+1.09	179163	195576	unknown	unknown
YHR028C	DAP2______	+1.38	489429	673771	protein degradation	dipeptidyl aminopeptidase B
YIL175W	__________	+1.47	208802	306145	unknown	unknown
YJR054W	__________	+1.74	327791	570572	unknown	unknown
YKR051W	__________	-1.00	337716	336774	unknown	unknown
YLR208W	SEC13_____	+1.32	1180883	1563574	secretion	vesicle coat component
YML078W	CPR3______	+1.28	2086457	2669132	protein folding	peptidyl-prolyl cis-trans isomerase
YMR308C	PSE1______	+1.04	487117	506609	nuclear protein targeting	beta-karyopherin
YNR030W	ECM39_____	+1.49	383605	572866	cell wall biogenesis	unknown
YOR109W	INP53_____	+1.07	585230	628310	vesicle trafficking; phosphatidylinositol metabolism	inositol polyphosphate 5-phosphatase
YPL085W	SEC16_____	+1.03	119871	123818	secretion	vesicle coat component
YPR176C	BET2______	+1.13	657633	746091	protein processing	geranylgeranyltransferase type II beta subunit
YBR157C	ICS2______	-1.07	140823	131414	Cu2+ ion homeostasis (putative)	unknown
YCR094W	CDC50_____	+1.18	257212	302422	cell cycle	unknown
YDR029W	__________	-1.01	113849	112955	unknown	unknown
YDR394W	RPT3______	+1.19	768305	917910	protein degradation	26S proteasome subunit
YER090W	TRP2______	+1.28	757861	968352	tryptophan biosynthesis	anthranilate synthase component I
YGL087C	MMS2______	+1.66	330387	547332	DNA repair, postreplication	unknown
YGR194C	XKS1______	+1.27	212461	270458	xylulose utilization	xylulokinase
YHR211W	FLO5______	+1.14	289172	328916	flocculation	flocculin, similar to Flo1p
YJL088W	ARG3______	-1.82	257863	141383	arginine biosynthesis	ornithine carbamoyltransferase
YKL085W	MDH1______	+1.11	696632	776141	TCA cycle	malate dehydrogenase
YLR020C	__________	-1.01	136929	135895	unknown	unknown; similar to triacylglycerol lipase
YLR392C	__________	+1.08	175200	189171	unknown	unknown
YMR126C	__________	-1.08	276297	254890	unknown	unknown
YNL179C	__________	-2.22	423757	190641	unknown	unknown
YOL085C	__________	-1.16	131388	113563	unknown	unknown
YOR297C	TIM18_____	+1.19	349581	415463	mitochondrial protein targeting	inner membrane translocase component
YPL273W	SAM4______	-1.09	1671457	1532677	sulfur amino acid metabolism	S-adenosylmethionine:homocysteine S-methyltransferase
YAL004W	__________	-1.08	144717	134165	unknown	unknown
YBR169C	SSE2______	-1.17	321456	274119	heat shock response	HSP70 family
YCR106W	__________	-2.09	306096	146770	unknown	unknown; similar to transcription factors
YDR040C	ENA1______	-1.02	420375	413023	transport	plasma membrane ATPase
YDR407C	TRS120____	-1.46	503437	345852	secretion (putative)	transport protein particle (TRAPP) subunit, 120 kD
YER102W	RPS8B_____	-1.37	15942991	11638120	protein synthesis	ribosomal protein S8B
YGL100W	SEH1______	-1.10	1020026	924360	nuclear protein targeting	nuclear pore protein
YGR207C	__________	+1.33	773320	1030029	unknown	electron-transferring flavoprotein, beta chain (putative)
YIL004C	BET1______	+1.10	380060	419604	secretion	vesicle recycling; SNARE
YJL101C	GSH1______	+1.20	416763	499771	glutathione biosynthesis	gamma-glutamylcysteine synthetase
YKL096W	CWP2______	+1.17	15877377	18602233	unknown	cell wall protein
YLR033W	__________	+1.21	226803	273861	unknown	involved in temperature-sensitive growth and in pheromone response pathway
YLR405W	__________	-1.21	459915	379414	unknown	unknown
YMR138W	CIN4______	+1.03	246409	254238	mitosis, chromosome segregation	GTP-binding protein
YNL192W	CHS1______	+1.02	101318	103343	cytokinesis	chitin synthase
YOL098C	__________	-1.05	875040	836338	unknown	unknown
YOR308C	SNU66_____	+1.03	174746	180277	mRNA splicing (putative)	U4/U6.U5 snRNP protein
YPR003C	__________	-1.00	151087	150538	unknown	unknown; similar to Sul1p and sulfate transporters from
YBL098W	__________	-1.02	226134	221285	unknown	unknown; similar to bacterial NADP/NAD-dependent
YCL003W	__________	+1.09	132594	144621
YDL100C	__________	+1.02	466804	477419	unknown	unknown; similar to E. coli arsenical pump-driving ATPase
YDR223W	__________	+1.11	123465	136608	unknown	unknown
YEL004W	YEA4______	+1.15	145973	167840	unknown	unknown; similar to GOG5, a gene involved in vanadate
YFR023W	PES4______	+1.02	106431	108295	DNA replication	unknown; suppresses DNA polymerase epsilon mutation
YHR040W	__________	-1.14	302255	265269	unknown	unknown; similar to Hit1p, expressed under
YIR011C	STS1______	+1.15	502027	578735	nuclear protein targeting	Rna15 transport factor
YJR067C	YAE1______	-1.29	290148	224567	unknown	unknown
YKR064W	__________	-1.01	111035	110349	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YLR221C	__________	-1.44	821769	572015	unknown	unknown
YML091C	RPM2______	+1.05	490414	515433	tRNA processing, mitochondrial	RNase P subunit
YNL004W	HRB1______	+1.01	496624	500389	unknown	RNA binding protein (putative)
YNR043W	MVD1______	-1.25	1711251	1364353	sterol metabolism	mevalonate pyrophosphate decarboxylase
YOR122C	PFY1______	+1.43	2796281	4004156	cytoskeleton	profilin
YPL098C	__________	+1.21	555356	672524	unknown	unknown
YPR189W	SKI3______	-1.08	126979	117151	mRNA decay and virus resistance	unknown
YAL017W	FUN31_____	+1.03	352288	362585	unknown	putative protein kinase
YBR181C	RPS6B_____	-1.05	15916150	15094657	protein synthesis	ribosomal protein S6B
YCRX11W	__________	-1.32	224415	170214
YDR052C	DBF4______	-1.08	180740	166690	cell cycle	Cdc7p (kinase) regulator
YDR419W	RAD30_____	+1.01	123889	125091	DNA repair	unknown
YER114C	BOI2______	-1.07	206133	192042	bud emergence	binds Bem1p
YGL112C	TAF60_____	+1.01	407623	412625	transcription	TFIID 60 kD subunit
YGR219W	__________	-1.06	303078	286342	unknown	unknown
YIL015W	BAR1______	+8.37	116488	975175	mating	alpha-factor degradation
YJL113W	__________	+1.09	101055	110529	unknown	unknown
YKL109W	HAP4______	+1.09	265976	290711	transcription	component of heterotrimeric CCAAT-binding factor
YLR043C	TRX1______	+1.28	1625260	2085084	DNA replication	thioredoxin I
YLR415C	__________	-1.09	114202	104717	unknown	unknown
YMR150C	IMP1______	+1.40	342451	478326	protein processing	mitochondrial inner membrane protease

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YNL204C	SPS18_____	-1.01	131109	129613	sporulation	unknown
YOL108C	INO4______	+1.15	263819	302103	phospholipid biosynthesis	transcription factor
YOR320C	__________	+1.37	534184	733701	unknown	unknown
YPR015C	__________	-1.09	166614	152172	unknown	unknown; similar to human GT box-binding protein
YBL108W	__________	+1.03	108797	112142	unknown	unknown
YCL016C	__________	+1.04	163849	170009	unknown	unknown
YDL112W	TRM3______	+1.02	100894	103119	tRNA processing	tRNA robose methylase
YEL016C	__________	+1.07	146036	156380	unknown	unknown; similar to Ycr026p
YFR033C	QCR6______	-1.15	1526988	1324055	oxidative phosphorylation	ubiquinol cytochrome-c reductase subunit
YGR038W	ORM1______	-1.18	524148	445223	unknown	unknown
YHR051W	COX6______	-1.00	917169	916649	oxidative phosphorylation	cytochrome-c oxidase subunit VI
YIR021W	MRS1______	-1.08	169267	156512	mRNA splicing, COB mRNA	unknown
YJR079W	__________	-1.06	109032	102577	unknown	unknown
YKR076W	ECM4______	+1.67	142303	238270	cell wall biogenesis	unknown
YLR231C	__________	-1.01	320842	316330	unknown	unknown; similar to rat kynureninase (PIR:PS0370)
YML101C	__________	+1.09	326251	355828	unknown	unknown
YNL016W	PUB1______	+1.04	2316873	2414080	mRNA processing	poly(A)+ RNA-binding protein
YNR055C	HOL1______	-1.07	781290	730831	transport	(putative) multidrug resistance permease
YOR134W	BAG7______	-1.09	166037	152685	signaling	GTPase activating protein
YPL110C	__________	-1.08	105199	97418	unknown	unknown; similar to Pho81p
YPR201W	ARR3______	-1.13	190431	168146	arsenic resistance	arsenite transporter
YAL028W	__________	+1.22	147242	179276	unknown	unknown
YBR193C	MED8______	+1.02	147845	150563	transcription	RNA polymerase II mediator subunit
YDR064W	RPS13_____	-1.44	5796198	4027036	protein synthesis	ribosomal protein S13
YDR431W	__________	-1.08	125877	116808	unknown	unknown
YER125W	RSP5______	-1.01	445539	439994	protein degradation, ubiquitin-mediated	ubiquitin-protein ligase (E3 enzyme)
YGL124C	MON1______	+1.19	171758	205221	secretion (putative)	unknown; brefeldin A sensitive; monensin sensitive
YGR231C	PHB2______	+1.16	912141	1058023	aging	prohibitin homolog
YIL027C	__________	-1.01	248198	245359	unknown	unknown
YJL125C	GCD14_____	-1.20	479786	401090	protein synthesis	translation repressor of GCN4
YKL121W	__________	+1.11	111099	123588	unknown	unknown
YLR055C	SPT8______	-1.48	794993	536621	chromatin structure	histone acetyltransferase complex subunit
YLR425W	TUS1______	-1.10	177351	161342	unknown	unknown; interacts with Sec1p
YMR160W	__________	-1.14	116993	102459	unknown	unknown
YNL216W	RAP1______	+1.12	208530	233871	transcription	transcriptional repressor and activator
YOL120C	RPL18A____	-1.23	14182354	11573520	protein synthesis	ribosomal protein L18A
YOR332W	VMA4______	+1.34	3476605	4671464	vacuolar acidification	vacuolar H+-ATPase V1 domain 27 KD subunit
YPR027C	__________	-1.12	237977	212265	unknown	unknown; similar to Ynl019p and Ynl033p
YBR007C	__________	+1.36	212553	288518	unknown	unknown
YCL028W	RNQ1______	-1.05	846196	808661	unknown	unknown; "transferable epigenetic modifier"
YDL124W	__________	+3.01	606463	1825882	unknown	unknown
YEL027W	CUP5______	-1.17	3852588	3281463	ATP synthesis	vacuolar ATP synthase subunit
YFR044C	__________	+1.12	1256159	1402299	unknown	unknown; similar to Ybr281p
YGR045C	__________	+1.02	114983	116774	unknown	unknown
YHR062C	RPP1______	-1.10	465645	424367	rRNA and tRNA processing	RNase P and RNase MRP subunit
YIR032C	DAL3______	-1.00	115825	115349	purine metabolism	ureidoglycolate hydrolase
YJR092W	BUD4______	+1.01	124156	124974	bud site selection, axial	unknown
YKR088C	__________	+1.35	484361	655255	unknown	unknown
YLR243W	__________	-1.11	542991	488089	unknown	unknown
YML112W	CTK3______	+1.00	376521	377977	cell cycle (putative)	protein kinase subunit
YNL028W	__________	-1.07	117729	110321	unknown	unknown
YNR067C	__________	+1.78	382700	680785	unknown	unknown
YOR144C	EFD1______	+1.01	146817	147764	recombination (putative)	unknown
YPL122C	TFB2______	+1.00	326977	328390	transcription	TFIIH 55 kD subunit
YAL038W	CDC19_____	+1.17	12224286	14294248	glycolysis	pyruvate kinase
YBR205W	KTR3______	+1.19	704931	836101	protein glycosylation	putative alpha-1,2-mannosyltransferase
YDR076W	RAD55_____	-1.04	208143	199869	DNA repair and recombination	RecA homolog
YDR443C	SSN2______	+1.09	1119434	1216499	transcription	RNA polymerase II mediator subunit
YER137C	__________	-1.04	130126	125269	unknown	unknown
YGL136C	__________	+1.21	294943	357166	unknown	unknown; similar to E. coli ftsJ protein
YGR243W	__________	-1.38	341411	246697	unknown	unknown
YIL039W	__________	-3.05	585932	191810	unknown	unknown
YJL137C	GLG2______	+1.21	182699	221258	glycogen metabolism	glycogen synthesis initiator
YKL133C	__________	+1.50	127706	191498	unknown	unknown
YLR067C	PET309____	+1.04	98837	102419	RNA processing	COX1 mRNA stability
YLR437C	__________	-1.28	1078454	844298	unknown	unknown
YMR172W	HOT1______	+1.07	186354	200133	osmotic stress response (putative)	unknown; nuclear protein; similar to Msn1p
YNL228W	__________	-1.28	431994	337060	unknown	unknown
YOL132W	__________	-1.21	138228	114560	unknown	unknown; similar to glycophospholipid-anchored surface glycoprotein GAS1
YPR039W	__________	-1.02	183895	179596	unknown	unknown
YBR017C	KAP104____	+1.00	263482	263618	nuclear protein targeting	beta-karyopherin
YCL040W	GLK1______	+3.02	237852	719417	glycolysis	glucokinase
YDL134C	PPH21_____	+1.25	993518	1237573	cell cycle	protein phosphatase 2A
YDR259C	YAP6______	+1.15	149316	171633	salt tolerance	basic leu zipper transcription factor
YEL039C	CYC7______	-2.56	528773	206709	respiration	cytochrome c (isoform 2)
YFR056C	__________	-1.03	132309	128145	unknown	unknown
YGR057C	LST7______	+1.08	122789	132687	secretion	unknown; post-Golgi
YHR072W	ERG7______	-1.04	306394	294876	sterol metabolism	lanosterol synthase
YIR044C	__________	+2.04	164018	333967	unknown	unknown
YJR103W	URA8______	+1.02	339482	345006	pyrimidine biosynthesis	CTP synthase
YKR100C	__________	+1.16	358952	415054	unknown	unknown
YLR255C	__________	+1.04	107081	111748	unknown	unknown
YML123C	PHO84_____	-4.74	2488620	524512	transport	inorganic phosphate permease
YNL038W	__________	-1.22	403338	329798	unknown	unknown
YOR156C	NFI1______	-1.07	345389	322611	unknown	interacts with Cdc12p in 2-hybrid assay
YPL134C	ODC1______	+1.47	190277	278777	unknown	unknown; similar to mitochondrial ADP/ATP carrier proteins
YAL049C	__________	+1.05	477721	501069	unknown	unknown
YBR217W	APG12_____	+1.00	220896	221402	autophagy	unknown
YDR088C	SLU7______	+1.06	258160	273427	mRNA splicing	3' splice site selection
YDR455C	__________	-1.05	129838	124216	unknown	unknown
YER146W	LSM5______	-1.64	743854	452995	mRNA splicing (putative)	unknown; similar to snRNA-associated protein
YGL148W	ARO2______	-1.03	1775196	1725687	aromatic amino acid biosynthesis	chorismate synthase
YGR255C	COQ6______	+1.71	341915	586154	ubiquinone biosynthesis	monooxygenase
YIL051C	MMD1______	-1.55	4662069	3001073	maintenance of mitochondrial DNA	unknown
YJL149W	__________	+1.23	236630	291981	unknown	unknown
YKL145W	RPT1______	-1.03	971375	947245	protein degradation, ubiquitin-mediated	26S proteasome subunit
YLR079W	SIC1______	+1.27	445640	566336	cell cycle	Cdc28p-Clb5 protein kinase inhibitor
YLR449W	FPR4______	-1.13	2308240	2045089	protein folding (putative)	similar to peptidyl-prolyl cis-trans isomerase
YMR182C	RGM1______	-1.23	304354	248419	transcription	putative repressor
YNL240C	NAR1______	-1.03	232743	225398	nuclear organization and biogenesis (putative)	unknown; similar to human Narf

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOL144W	NOP8______	-1.26	565831	448212	ribosome biogenesis (putative)	unknown; nucleolar protein
YOR354C	__________	+1.08	364207	391759	unknown	unknown
YPR051W	MAK3______	+1.13	463963	523540	viral propagation	L-A virus GAG protein N-acetyltransferase
YBR029C	CDS1______	-1.06	137321	129288	lipid metabolism	CDP-diacylglycerol synthase
YCL052C	PBN1______	+1.28	325084	417610	protein degradation	protease B
YDL146W	__________	+1.11	146838	163556	unknown	unknown
YDR267C	__________	-1.08	393551	365668	unknown	unknown; similar to Sec13p and other proteins with WD
YEL051W	VMA8______	+1.09	1880394	2044798	vacuolar acidification	vacuolar H+-ATPase V1 domain D subunit
YGR069W	__________	-1.74	490024	281678	unknown	unknown
YHR083W	__________	+1.08	606743	655324	unknown	unknown
YJR115W	__________	-1.20	604112	502739	unknown	unknown
YLR263W	RED1______	-1.26	155354	123567	meiosis, synapsis	synaptonemal complex component (putative)
YMR002W	__________	+1.89	1278734	2418166	unknown	unknown
YNL050C	__________	-1.07	498030	463751	unknown	unknown
YOR168W	GLN4______	-1.27	606220	475649	protein synthesis	tRNA synthetase, glutaminyl
YPL146C	__________	-1.42	926735	654436	unknown	unknown
YAL063C	FLO9______	+1.07	295908	315426	flocculation	cell wall protein
YBR229C	ROT2______	+1.25	228310	286043	cytoskeleton	glucosidase II
YDR467C	__________	+1.08	238300	257643	unknown	unknown
YER157W	SEC34_____	+1.09	256909	279988	secretion	Golgi protein retention
YGL160W	__________	+1.09	166742	182550	unknown	unknown
YGR267C	FOL2______	+1.10	891756	976871	folate biosynthesis	GTP cyclohydrolase I
YIL063C	YRB2______	+1.04	731785	760968	nuclear export	Ran-GTPase-binding protein
YJL161W	__________	+3.23	136955	442821	unknown	unknown
YKL157W	APE2______	+1.69	359852	608205	protein degradation	aminopeptidase yscII
YLR091W	__________	-1.01	124646	123771	unknown	unknown
YLR461W	PAU4______	+1.59	319917	508268	unknown	unknown; seripauperin family
YNL252C	MRPL17____	-1.09	337535	310530	protein synthesis	ribosomal protein, mitochondrial L17
YOL156W	HXT11_____	+1.03	195588	201148	transport	hexose permease
YOR366W	__________	-1.02	165927	162321	unknown	unknown
YPR063C	__________	-1.11	613689	551880	unknown	unknown
YBR041W	FAT1______	-1.29	126270	97834	transport	long-chain fatty acid transporter
YCL064C	CHA1______	-1.78	1961435	1103313	hydroxy amino acid metabolism	L-serine/L-threonine deaminase
YDL158C	__________	-1.26	132863	105838	unknown	unknown
YDR279W	__________	-1.01	267568	264070	unknown	unknown
YEL062W	NPR2______	-1.09	146920	134946	nitrogen transport	transcription factor
YGR081C	__________	-1.33	701481	528661	unknown	unknown; similar to chicken myosin heavy chain PIR:A29320
YHR095W	__________	-1.70	302394	177923	unknown	unknown
YJR127C	ZMS1______	-1.06	520595	492991	unknown	unknown; similar to Adr1p and Yml081p
YLR275W	SMD2______	-1.02	294058	286901	mRNA splicing	U1 snRNP protein
YMR014W	__________	-1.30	724632	557128	unknown	unknown
YNL060C	__________	-1.16	1037662	897353
YOR180C	DCI1______	-1.01	160282	159032	fatty acid metabolism	delta(3,5)-delta(2,4)-dienoyl-CoA isomerase
YPL158C	__________	+1.09	288118	313337	unknown	unknown
YAR009C	__________	-1.16	106435	91872	unknown	unknown
YBR241C	__________	+1.21	130879	158164	unknown	unknown; similar to sugar permeases
YDR110W	FOB1______	-1.15	213519	185869	DNA replication(putative)	fork blocking protein
YDR479C	__________	+1.08	242705	260961	unknown	unknown
YER166W	__________	-1.19	116108	97396	unknown	unknown; similar to members of the Drs2p family of P-type
YGL172W	NUP49_____	-1.13	257629	228606	nuclear protein targeting	nuclear pore protein
YGR279C	SCW4______	+2.28	5617815	12825513	cell wall biogenesis	glucanase (putative)
YIL072W	HOP1______	-1.11	213298	192806	meiosis, synapsis	DNA binding protein
YJL173C	RFA3______	+1.20	635814	760774	DNA replication	replication factor A, 13 kD subunit
YKL169C	__________	-1.26	372487	294674	unknown	unknown
YLR103C	CDC45_____	+1.06	200946	213970	DNA replication	pre-replicative complex subunit (putative)
YMR205C	PFK2______	-1.05	1129424	1073800	glycolysis	phosphofructokinase
YNL264C	PDR17_____	+1.11	340422	378384	drug resistance	unknown
YOR002W	ALG6______	+1.38	719954	992898	protein glycosylation	glucosyltransferase
YOR378W	__________	-1.15	155028	134254	unknown	unknown; similar to members of major facilitator superfamily
YPR075C	OPY2______	+1.33	453600	601239	signaling (putative)	pheromone pathway
YBR053C	__________	+1.55	242386	375583	unknown	unknown; similar to rat calcium-binding protein regucalcin
YCLX03C	__________	-1.02	100418	98683
YDL170W	UGA3______	+1.24	187389	232944	transcription	activator of GABA catabolic genes
YDR291W	__________	-1.05	150970	143780	unknown	unknown; similar to Sgs1p and other DNA helicases
YEL074W	__________	-1.02	255836	250414	unknown	unknown
YGR093W	__________	+1.08	401325	432310	unknown	unknown
YHR107C	CDC12_____	+1.13	1093025	1229886	cytokinesis	septin
YJR139C	HOM6______	+1.33	2361807	3139893	methionine and threonine biosynthesis	homoserine dehydrogenase
YLR287C	__________	+1.06	415194	439621	unknown	unknown
YMR026C	PEX12_____	+1.18	337511	398313	peroxisome biogenesis	integral membrane protein
YNL072W	RNH35_____	-1.09	314934	289203	DNA replication (putative)	ribonuclease H
YOR192C	__________	-1.00	240315	239868	unknown	putative thiamine transporter
YPL170W	__________	+1.02	121200	123179	unknown	unknown
YAR031W	__________	+1.18	209478	246396	unknown	unknown; similar to subtelomerically-encoded proteins
YBR253W	SRB6______	-1.08	361646	333410	transcription	RNA polymerase mediator subunit
YDR122W	KIN1______	+1.13	196049	222183	unknown	protein kinase
YDR491C	__________	+1.09	141378	154196	unknown	unknown; similar to Hrd312p
YER177W	BMH1______	+1.31	5218475	6814065	unknown	unknown; similar to mammalian 14-3-3 proteins
YGL184C	STR3______	+1.10	232008	255414	methionine biosynthesis	cystathionine beta-lyase
YGR291C	__________	-1.03	120309	117222	unknown	unknown
YIL083C	__________	+1.41	368104	517693	unknown	unknown
YJL185C	__________	+1.19	255258	302847	unknown	unknown
YKL181W	PRS1______	+1.11	2252167	2511094	purine, pyrimidine, tryptophan and histidine biosynthesis	phosphoribosylpyrophosphate synthetase
YLR115W	CFT2______	+1.04	214588	224056	mRNA 3'-end processing	cleavage/polyadenylation factor CF II component
YMR217W	GUA1______	-1.34	5322860	3974805	purine metabolism	GMP synthase
YNL276C	__________	+1.25	176589	220443	unknown	unknown
YOR014W	RTS1______	+1.16	429995	499842	stress response	protein phosphatase 2A B-type regulatory subunit
YOR390W	__________	-1.47	485198	329266	unknown	unknown
YPR087W	__________	-1.16	1700578	1463192	unknown	unknown
YBR065C	ECM2______	-1.12	140033	124488	cell wall biogenesis and mRNA splicing (putative)	unknown
YCR003W	MRPL32____	-1.03	132392	128595	protein synthesis	ribosomal protein, mitochondrial L32
YDL182W	LYS20_____	-1.80	3248643	1802349	lysine biosynthesis	homocitrate synthase
YDR303C	__________	-1.15	311052	269454	unknown	unknown; similar to transcription factors
YER007W	PAC2______	-1.04	180078	172678	mitosis	unknown; microtubule stability
YGR105W	VMA21_____	-1.01	362581	357272	vacuolar acidification	vacuolar H+-ATPase assembly protein
YHR119W	SET1______	+1.16	864797	1001286	transcription	trithorax protein family
YJR151C	__________	+1.27	196100	248661	unknown	unknown
YLR298C	YHC1______	+1.04	277228	287640	mRNA splicing	U1 snRNP protein
YMR037C	MSN2______	-1.09	210951	193293	stress response	transcriptional activator
YNL084C	END3______	-1.32	646458	489673	endocytosis	actin cytoskeleton regulatory complex component

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOR202W	HIS3______	+1.05	809306	852667	histidine biosynthesis	imidazoleglycerol-phosphate dehydratase
YPL182C	__________	-1.04	157170	150898	unknown	unknown
YBL004W	__________	+1.00	159199	159513	unknown	unknown; major facilitator superfamily
YBR265W	TSC10_____	-1.40	438511	314274	sphingolipid biosynthesis	3-ketosphinganine reductase
YDL004W	ATP16_____	+1.10	677932	746689	ATP synthesis	F1F0-ATPase subunit
YDR134C	__________	-1.38	15706281	11385511	unknown	unknown
YDR503C	LPP1______	+1.31	299519	392615	phospholipid metabolism	lipid phosphate phosphatase
YFL002C	SPB4______	-1.24	457017	367746	rRNA processing, 25S	RNA helicase
YGL196W	__________	+1.21	294026	356067	unknown	unknown
YHL003C	LAG1______	-1.07	400540	373229	aging	unknown
YIL095W	PRK1______	+1.04	377911	392319	unknown	protein kinase
YJL197W	UBP12_____	-1.12	159968	142484	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YKL193C	SDS22_____	+1.36	252457	343337	glucose repression	Glc7p regulatory subunit
YLR127C	APC2______	-1.07	131507	123208	mitosis	anaphase promoting complex subunit
YML004C	GLO1______	+1.68	767872	1292136	amino acid metabolism	glyoxalase I
YMR229C	RRP5______	-1.21	1949532	1616422	rRNA processing	unknown; required for pre-rRNA cleavage
YNL286W	CUS2______	+1.01	292412	295875	mRNA splicing, putative	unknown
YOR026W	BUB3______	+1.15	394492	455450	cell cycle, checkpoint	unknown
YPL004C	__________	+1.14	928599	1058457	unknown	unknown; similar to tropomyosin
YPR099C	__________	-1.35	802483	594023	unknown	unknown
YBR077C	__________	+1.38	200609	276621	unknown	unknown
YCR015C	__________	+1.02	130988	134008	unknown	unknown
YDL194W	SNF3______	+1.00	109832	110311	transport	glucose permease
YDR315C	IPK1______	+1.27	132831	169186	signaling (putative)	inositol(1,4,5)P3 6-kinase
YER017C	AFG3______	+1.10	213245	233606	protein degradation	mitochondrial metalloprotease
YGL004C	__________	+1.05	100522	105709	unknown	unknown
YGR115C	__________	-1.06	188599	177394	unknown	unknown; similar to Sly41p, questionable ORF
YHR131C	__________	+1.02	444449	453416	unknown	unknown
YJL004C	SYS1______	-1.32	334042	253674	secretion (putative)	unknown; overexpression suppresse mutation in ypt6
YKL004W	AUR1______	-1.13	1242054	1102649	sphingolipid metabolism	phosphatidylinositol:ceramide phosphoinositol transferase
YLL004W	ORC3______	+1.02	156880	159624	DNA replication	origin recognition complex, 62 kDa subunit
YLR310C	CDC25_____	+1.02	511018	522239	signaling	GDP/GTP exchange factor for Ras1p and Ras2p
YMR048W	__________	+1.43	199856	284859	unknown	unknown
YNL096C	RPS7B_____	-1.31	8916810	6795795	protein synthesis	ribosomal protein S7B
YOL004W	SIN3______	+1.04	374934	390990	transcription	transcriptional regulator
YOR214C	__________	-1.14	118939	104392	unknown	unknown
YPL193W	RSA1______	-1.15	237620	206937	ribosome biogenesis (putative)	unknown
YAR060C	__________	-1.12	214160	191973	unknown	identical to Yhr2p
YBL014C	RRN6______	-1.08	149451	138442	transcription	component of rDNA transcription factor complex
YBR277C	__________	+1.07	153003	163585	unknown	unknown
YDL016C	__________	-1.19	396911	332286	unknown	unknown
YDR146C	SWI5______	-1.04	152900	147546	cell cycle	transcription factor, regulates HO
YDR515W	SLF1______	-1.18	241760	204754	Cu2+ ion homeostasis	CuS biomineralization
YGL208W	SIP2______	+1.20	206640	248555	transcription	component of Snf1 protein complex
YHL012W	__________	-1.06	161803	152539	unknown	unknown; similar to UTP glucose-1-phosphate
YIL106W	MOB1______	+1.15	354209	406448	mitosis	unknown; binds Mps1p and Dbf2p
YJL209W	CBP1______	-1.02	260419	255169	mRNA stability, COB mRNA	unknown
YKL205W	LOS1______	-1.13	917370	814508	tRNA splicing	nuclear pore protein
YLR139C	SLS1______	-1.08	163857	151238	mitochondrial metabolism	integral membrane protein
YML013W	__________	-1.09	144121	132774	unknown	unknown
YMR241W	YHM2______	-1.17	622755	534413	unknown	suppresses HM mutant
YNL298W	CLA4______	+1.08	901536	975280	cytokinesis	protein kinase
YOR038C	HIR2______	-1.10	153221	139227	transcription	histone transcription inhibitor
YPL016W	SWI1______	-1.09	110634	101830	transcription	component of SWI/SNF global activator complex
YPR111W	DBF20_____	+1.12	150133	167952	cell cycle	M phase; protein kinase
YBR088C	POL30_____	+1.01	370876	374285	DNA replication	DNA polymerase processivity factor
YCR025C	__________	-1.01	131804	130398	unknown	unknown
YDL206W	__________	+1.12	140487	157637	unknown	unknown; similar to transporter proteins
YDR325W	YCG1______	-1.01	211427	208626	mitosis, chromosome condensation (putative)	unknown; high copy suppressor of brn1 mutation
YER028C	__________	+1.03	167327	171911	unknown	unknown; similar to Mig2p
YGL016W	KAP122____	-1.10	327013	296817	drug resistance	karyopherin-beta family protein
YGR127W	__________	-1.03	289988	281263	unknown	unknown; similar to mouse T10 protein PIR:S37448
YHR141C	RPL42B____	-1.44	13368650	9273142	protein synthesis	ribosomal protein L42B
YJL016W	__________	+1.14	303777	345780	unknown	unknown
YKL015W	PUT3______	-1.14	280199	245345	transcription	positive regulator of PUT genes
YLL016W	SDC25_____	-1.28	165884	129858	signaling (putative)	GDP/GTP exchange factor for Ras
YLR321C	SFH1______	-1.15	378799	328577	chromatin structure	chromatin remodeling complex subunit
YMR058W	FET3______	-1.45	574317	396170	transport	cell surface ferroxidase
YNL108C	__________	-1.17	555138	474644	unknown	unknown
YOL016C	CMK2______	+2.33	778326	1816226	signaling	calmodulin-dependent protein kinase
YOR226C	ISU2______	+1.09	378202	410549	iron homeostasis	unknown; similar to iron-sulfur cluster protein nifU
YPL205C	__________	-1.08	179471	166344	unknown	unknown
YBL026W	LSM2______	-1.07	452834	423401	mRNA splicing	core snRNP protein
YBR289W	SNF5______	-1.05	3203810	3049595	transcription	component of SWI/SNF global activator complex
YDL028C	MPS1______	+1.04	214457	223933	mitosis, checkpoint	protein kinase
YDR158W	HOM2______	+1.14	1346868	1529777	threonine and methionine biosynthesis	aspartate-semialdehyde dehydrogenase
YDR527W	__________	+1.01	276611	278790	unknown	unknown
YGL220W	__________	-1.35	683642	504738	unknown	unknown; similar to Vibrio alginolyticus bolA protein
YHL024W	RIM4______	+1.10	137246	150400	sporulation (putative)	unknown; N-terminus has putative RNA binding domain
YIL118W	RHO3______	-1.01	102910	102034	cytoskeleton	GTP-binding protein, rho family
YJL221C	FSP2______	+1.10	154551	169323	unknown	unknown; similar to maltase
YKL217W	JEN1______	+1.09	112146	122511	transport	lactate transporter
YLR151C	PCD1______	+1.07	121630	130648	unknown	nudix hydrolase family
YMR253C	__________	-1.10	105750	96198	unknown	major facilitator superfamily
YNL310C	__________	+1.03	394606	406604	unknown	unknown
YOR050C	__________	+1.08	187094	201647	unknown	unknown
YPL028W	ERG10_____	-1.32	2550322	1932943	sterol metabolism	acetoacetyl CoA thiolase
YPR123C	__________	-1.27	161856	127698	unknown	unknown
YBR099C	__________	+1.07	143576	153800	unknown	unknown
YCR036W	RBK1______	+1.34	127967	171120	ribose metabolism	ribokinase
YDL218W	__________	-1.17	162789	139326	unknown	unknown
YDR337W	MRPS28____	-1.42	396695	280027	protein synthesis	ribosomal protein, mitochondrial S28
YER039C	HVG1______	+1.06	143398	152624	protein glycosylation (putative)	nucleotide sugar transporter (putative)
YGL028C	SCW11_____	+1.03	729422	751696	cell wall biogenesis	glucanase (putative)
YGR139W	__________	+1.02	165380	168065	unknown	unknown
YHR152W	SPO12_____	+1.05	531046	556685	meiosis; mitotic cell cycle	unknown
YJL028W	__________	-1.48	229775	154874	unknown	unknown
YKL027W	__________	+1.08	516023	554751	unknown	unknown; similar to E. coli molybdopterin-converting factor
YLL028W	TPO1______	-1.03	317361	307938	transport	polyamine transport protein
YLR333C	RPS25B____	-1.24	14935435	12040671	protein synthesis	ribosomal protein S25B

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YMR070W	MOT3______	+1.17	376103	441207	mating	transcriptional regulator of pheremone-responsive genes
YNL120C	__________	+1.00	207072	208015	unknown	unknown
YOL028C	YAP7______	-1.30	240639	185280	transcription	basic leucine zipper transcription factor
YOR238W	__________	+1.46	365472	532479	unknown	unknown
YPL217C	BMS1______	-1.23	1367200	1109662	unknown	unknown; essential
YBL038W	MRPL16____	+1.04	108836	113282	protein synthesis	ribosomal protein, mitochondrial L16
YBR301W	__________	+1.51	263658	399391	unknown	unknown; similar to Ykl224p and other members of the PAU1
YDL040C	NAT1______	-1.00	355294	353801	protein processing	protein N-acetyltransferase subunit
YDR170C	SEC7______	-1.09	660651	604153	secretion	vesicle coat component
YDR539W	__________	-1.13	333023	294227	unknown	unknown
YFL033C	RIM15_____	+1.02	434500	443964	meiosis	protein kinase
YGL231C	__________	+1.21	713295	861166	unknown	unknown
YHL035C	__________	-1.27	1851332	1462598	unknown	unknown; ATP-binding cassette (ABC) superfamily
YIL130W	__________	-1.47	1014173	689102	unknown	unknown; similar to transcription factors
YJR009C	TDH2______	+1.18	15743220	18610093	glycolysis	glyceraldehyde-3-phosphate dehydrogenase 2
YKR004C	ECM9______	-1.16	749849	646333	cell wall biogenesis	unknown
YLR161W	__________	+1.39	498997	692460	unknown	unknown
YML035C	AMD1______	+1.00	336023	336736	protein glycosylation	alpha-mannosidase, putative
YMR265C	__________	+1.00	311563	312805	unknown	unknown
YNL322C	KRE1______	+1.77	836771	1484551	cell wall biogenesis	beta-1,6-glucan assembly
YOR062C	__________	+1.01	136660	137989	unknown	unknown
YPL040C	ISM1______	+1.02	252869	258477	protein synthesis	tRNA synthetase, mitochondrial, isoleucyl
YPR135W	CTF4______	-1.01	115835	114321	DNA replication	polymerase alpha binding protein
YBR110W	ALG1______	+1.23	312196	383414	protein glycosylation	beta-1,4-mannosyltransferase
YCR048W	ARE1______	-1.09	131188	120174	sterol metabolism	acyl-CoA sterol acyltransferase
YDL230W	PTP1______	+1.21	213904	258498	unknown	protein phosphatase
YDR349C	YPS7______	+1.29	460727	593783	protein degradation	GPI-anchored aspartic protease
YER049W	__________	-1.09	554006	506208	unknown	unknown
YGL040C	HEM2______	-1.15	555887	483904	heme biosynthesis	porphobilinogen synthase
YGR151C	__________	+1.09	261694	284013	unknown	unknown
YHR164C	DNA2______	+1.21	314324	380479	DNA replication	DNA helicase
YJL041W	NSP1______	-1.18	685571	580142	nuclear protein targeting	nuclear pore protein
YKL038W	RGT1______	-1.04	133926	128450	(glucose) transport	transcriptional regulator of glucose transporters
YLL040C	VPS13_____	-1.08	156889	144755	vacuolar protein targeting	component of peripheral membrane protein complex
YLR345W	__________	+1.72	164662	283768	unknown	unknown
YMR081C	ISF1______	+1.43	150020	213781	RNA splicing, mitochondrial	interacts with Nam7p
YNL132W	__________	-1.11	509459	457819	unknown	unknown; similar to Achlya ambisexualis antheridiol steroid
YOL040C	RPS15_____	+1.01	15769014	15998097	protein synthesis	ribosomal protein S15
YOR250C	CLP1______	+1.32	320477	422829	mRNA 3'-end processing	cleavage/polyadenylation factor CF IA component
YPL229W	__________	+1.54	849592	1310369	unknown	unknown
YBL050W	SEC17_____	+1.06	612507	651553	secretion	SNAP; vesicle fusion
YDL052C	SLC1______	+1.07	297595	319122	phospholipid metabolism	fatty acyltransferase
YFL043C	__________	+1.04	216867	225708	unknown	unknown
YGL243W	TAD1______	-1.03	219898	212878	tRNA processing	tRNA-specific adenosine deaminase
YIL142W	CCT2______	+1.16	1239690	1440061	protein folding	cytoplasmic chaperonin complex
YJR020W	__________	+1.10	114570	126466	unknown	unknown
YKR016W	__________	+1.23	374523	460156	unknown	unknown
YLR173W	__________	+1.15	101930	116813	unknown	unknown
YML045W	__________	+1.29	3171099	4091113	unknown	unknown
YMR277W	FCP1______	+1.04	406985	422416	transcription	TFIIF interacting component of CTD phosphatase
YNL334C	SNO2______	+1.40	193800	271108	unknown	unknown; induced in stationary phase
YOR074C	CDC21_____	-1.03	499335	486242	DNA replication	thymidylate synthase
YPL052W	__________	+1.76	262333	461529	unknown	unknown
YPR145W	ASN1______	+1.24	1793353	2223664	asparagine biosynthesis	asparagine synthetase
YBR122C	MRPL36____	-1.01	315780	313116	protein synthesis	ribosomal protein, mitochondrial L36
YCR060W	__________	+1.01	305830	307942	unknown	unknown; similar to stress inducible protein Sti1p, has
YDL242W	__________	-1.15	113308	98283	unknown	unknown
YDR361C	__________	-1.32	890453	674021	unknown	unknown
YER060W	FCY21_____	-1.20	253041	211287	transport	purine-cytosine permease
YGL052W	__________	+1.06	191568	202167	unknown	unknown
YHR176W	__________	+1.35	116806	158189	unknown	unknown; similar to flavin-containing monooxygenases
YJL053W	PEP8______	+1.17	371753	435274	vacuolar protein targeting	vacuolar peripheral memebrane protein
YKL050C	__________	+1.11	103152	114726	unknown	unknown
YLL052C	AQY2______	+1.16	1534743	1782411	transport, water	aquaporin (putative)
YLR357W	RSC2______	+1.04	151829	158313	chromatin structure	chromatin remodeling complex subunit
YMR092C	AIP1______	+1.75	174643	305206	cytoskeleton	actin cortical patch component
YNL144C	__________	-1.02	165144	161479	unknown	unknown
YOL052C	SPE2______	-1.39	501520	359562	polyamine metabolism	S-adenosylmethionine decarboxylase
YOR262W	__________	-1.14	430786	376955	unknown	unknown
YPL241C	CIN2______	-1.07	268937	250929	mitosis, chromosome segregation	unknown
YBL062W	__________	+1.25	303971	380232	unknown	unknown
YDL064W	UBC9______	-1.17	738233	630860	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YDR191W	HST4______	-1.05	160729	153675	silencing (telomere)	unknown; similar to nuclear lamins
YFL055W	AGP3______	-1.11	128233	115635	transport	general amino acid permease
YGL255W	ZRT1______	-1.47	326359	221757	transport	high-affinity zinc transporter
YHR006W	STP2______	+1.73	216864	374228	tRNA splicing	unknown
YIL154C	(IMP2)____	+1.09	472258	514096	stress response	transcriptional repressor
YJR031C	GEA1______	+1.09	529749	576386	secretion	GDP/GTP exchange factor for ARF
YKR028W	SAP190____	+1.02	986506	1003917	cell cycle	Sit4p-associated protein
YLR185W	RPL37A____	-1.46	9653563	6615323	protein synthesis	ribosomal protein L37A
YMR289W	__________	+1.15	233157	267553	unknown	unknown
YNR007C	AUT1______	+1.17	208617	243435	autophagy	unknown
YOR086C	__________	+1.11	775202	863660	unknown	unknown
YPL062W	__________	-1.18	138418	117566	unknown	unknown
YPR157W	__________	+1.10	174589	192789	unknown	unknown
YBR134W	__________	-1.25	129016	103181	unknown	unknown
YCR071C	IMG2______	-1.21	257823	213005	mitochondrial DNA maintenance	unknown
YDR006C	SOK1______	+1.13	285016	321428	unknown	suppressor of a cAMP-dependent protein kinase mutant
YDR371W	__________	+1.10	238945	262914	unknown	unknown; similar to chitinases
YGL064C	__________	-1.16	187129	161398	unknown	unknown
YGR171C	MSM1______	+1.03	244354	252564	protein synthesis	tRNA synthetase, mitochondrial, methionyl
YHR188C	__________	-1.24	573590	462612	unknown	unknown
YJL065C	__________	+1.11	402319	446782	unknown	unknown; similar to DNA polymerase epsilon subunit c
YKL062W	MSN4______	+1.26	187642	235869	transcription	transcriptional activator with Snf1p
YLL064C	__________	+1.61	332328	533870	unknown	unknown; similar to members of the PAU1 family
YLR369W	SSQ1______	+1.05	263127	276533	DNA replication (mitochondrial)	mitochondrial HSP70
YMR104C	YPK2______	+1.14	142892	163518	unknown	protein kinase
YNL156C	__________	-1.02	479012	469291	unknown	unknown
YOL062C	APM4______	+1.15	547119	630849	secretion	vesicle coat component
YOR274W	MOD5______	+1.31	268286	350478	tRNA processing	tRNA isopentenyltransferase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YPL252C	YAH1______	-1.40	792420	566820	unknown	unknown; similar to adrenodoxin and ferrodoxin
YMR319C	FET4______	-1.29	377570	292543	transport	iron transporter
YBL074C	AAR2______	-1.33	132124	99313	mRNA splicing, MATa1	unknown
YDL076C	__________	+1.24	288335	358023	unknown	unknown
YDR203W	__________	+1.03	159947	164761	unknown	unknown
YFL067W	__________	-1.39	512636	368672	unknown	unknown; similar to periodic clock protein
YGR004W	__________	+1.04	185464	192883	unknown	unknown
YHR018C	ARG4______	+1.23	575719	709321	arginine biosynthesis	argininosuccinate lyase
YIL165C	__________	+1.10	209148	230481	unknown	unknown; similar to nitrilases, putative pseudogene
YJR043C	POL32_____	+1.04	414776	431746	DNA replication	polymerase delta 55 kD subunit
YKR040C	__________	-1.96	479008	244451	unknown	unknown
YLR197W	SIK1______	-1.06	3799971	3569999	rRNA processing	nucleolar protein
YMR299C	__________	+1.45	221417	320398	unknown	unknown
YNR019W	ARE2______	+1.04	101890	105896	sterol metabolism	acyl-CoA sterol acyltransferase
YOR098C	NUP1______	-1.11	519379	465933	nuclear protein targeting	nuclear pore protein
YPL074W	YTA6______	+1.07	125728	134798	unknown	unknown; AAA ATPase family
YPR165W	RHO1______	+1.46	2828900	4120705	signaling	GTP-binding protein, rho family
YBR146W	MRPS9_____	-1.37	296885	216892	protein synthesis	ribosomal protein, mitochondrial S9
YCR084C	TUP1______	-1.05	645442	616941	transcription	general repressor
YDR018C	__________	-1.17	141336	121086	unknown	unknown; similar to Ybr042p
YDR383C	__________	-1.10	236166	214404	unknown	unknown
YER080W	__________	+1.22	447985	545157	unknown	unknown
YGL076C	RPL7A_____	-1.22	3555408	2902766	protein synthesis	ribosomal protein L7A
YGR183C	QCR9______	+1.06	754321	796455	oxidative phosphorylation	ubiquinol cytochrome-c reductase subunit 9
YHR200W	RPN10_____	+1.22	1519366	1857652	protein degradation	26S proteasome subunit
YJL077C	ICS3______	+1.04	362986	375748	Cu2+ ion homeostasis (putative)	unknown
YKL074C	MUD2______	+1.16	264822	307968	mRNA splicing	commitment complex component
YLR009W	__________	-1.33	2264546	1702914	protein synthesis	ribosomal protein L24B (putative)
YLR381W	__________	+1.07	250595	268256	unknown	unknown
YNL168C	__________	+1.26	327698	413678	unknown	unknown; similar to E. coli hpcE gene product which is
YOL074C	__________	-1.25	150306	120116
YOR286W	__________	-1.37	726051	530473	unknown	unknown; similar to Drosophila melanogaster heat shock
YPL262W	FUM1______	+1.54	878726	1357560	TCA cycle	fumarate hydratase
YBL086C	__________	-1.36	205545	151484	unknown	unknown
YDL088C	ASM4______	-1.02	299711	295033	unknown	unknown; suppresses ts mutations in pol3
YDR211W	GCD6______	+1.09	359212	389799	protein synthesis	translation initiation factor eIF2b subunit
YFR011C	__________	+1.11	409907	454306	unknown	unknown
YGR016W	__________	+1.03	168178	173026	unknown	unknown
YHR029C	__________	+1.07	388024	415561	unknown	unknown; similar to thymidylate synthase in the N-terminal
YIL176C	__________	+1.65	438485	724893	unknown	unknown; similar to members of the PAU1 family
YJR055W	HIT1______	+1.10	246567	271567	unknown	required for growth at high temperature
YKR052C	MRS4______	-1.01	245780	242318	transport	mitochondrial carrier
YLR209C	__________	+1.51	510523	769793	unknown	unknown; similar to human purine nucleoside phosphorylase
YML079W	__________	+1.27	670685	848749	unknown	unknown
YMR309C	NIP1______	-1.10	831922	756726	nuclear protein targeting	unknown, similar to NSR1
YNR031C	SSK2______	-1.04	313339	301462	signaling, high osmolarity pathway	MAPKKK (mitogen-activated protein kinase kinase kinase)
YOR110W	TFC7______	-1.01	431103	426950	transcription	TFIIIC subunit
YPL086C	ELP3______	-1.29	700599	543459	chromatin structure	histone acetyltransferase complex subunit
YPR177C	__________	-1.17	185329	157855	unknown	unknown
YBR158W	CST13_____	+1.05	1060015	1110275	Cu2+ ion homeostasis (putative); chromosome stability	unknown; required for optimal growth
YCR095C	__________	+1.05	312790	328332	unknown	unknown
YDR030C	RAD28_____	+1.01	128855	130473	DNA repair	unknown
YDR395W	SXM1______	-1.04	459847	443358	mRNA export; nuclear protein targeting	karyopherin
YER091C	MET6______	+1.50	286027	430188	methionine biosynthesis	homocysteine methyltransferase
YGL088W	__________	-1.13	181600	160211	unknown	unknown; similar to Cyanophora paradoxa ribosomal protein
YGR195W	SKI6______	-1.14	787857	689899	rRNA processing	exoribonuclease
YHR212C	__________	+1.13	171318	193939	unknown	unknown; identical to Yar060p/Raa19p
YJL089W	SIP4______	-1.10	135060	122483	glucose derepression	transcription factor
YKL086W	__________	-1.03	151609	147880	unknown	unknown
YLR021W	__________	-1.08	446281	413483	unknown	unknown
YLR393W	ATP10_____	-1.01	112994	111809	ATP synthesis	F1F0 ATPase complex assembly
YMR127C	SAS2______	-1.04	260864	251963	silencing	zinc-finger protein
YNL180C	RHO5______	-1.07	628011	586503	signaling	Rho family GTPase
YOL086C	ADH1______	+1.13	15806622	17856889	glycolysis	alcohol dehydrogenase I
YOR298W	__________	-1.24	474903	383818	unknown	meiosis (putative)
YPL274W	SAM3______	-1.18	192740	163078	transport, amino acid	high affinity S-adenosylmethionine permease
YAL005C	SSA1______	-1.17	2308259	1967266	ER and mitochondrial translocation	cytosolic HSP70
YBR170C	NPL4______	-1.00	219983	219287	nuclear protein targeting	nuclear pore protein
YCR107W	AAD3______	-1.00	283974	282729	unknown	hypothetical aryl-alcohol dehydrogenase
YDR041W	__________	-1.25	356193	284714	protein synthesis	ribosomal protein, mitochondrial
YDR408C	ADE8______	-1.67	830937	496987	purine biosynthesis	phosphoribosylglycinamide formyltransferase
YER103W	SSA4______	-1.53	566462	369165	ER and mitochondrial translocation	cytosolic HSP70
YGL101W	__________	-1.57	482606	307223	unknown	unknown
YGR208W	SER2______	-1.19	867298	729203	glycine, serine, and threonine metabolism	phosphoserine phosphatase
YIL005W	__________	+1.07	273666	291801	unknown	unknown; similar to protein disulfide
YJL102W	MEF2______	+1.02	143130	145327	protein synthesis	translation elongation factor, mitochondrial
YKL098W	__________	+1.21	234551	283549	unknown	unknown
YLR034C	SMF3______	+1.28	301046	386612	transport (putative)	metal transporter (putative)
YLR406C	RPL31B____	-1.17	146914	125507	protein synthesis	ribosomal protein L31B
YMR139W	RIM11_____	+1.48	302724	447547	meiosis	protein kinase
YNL193W	__________	+1.02	204901	210004	unknown	unknown
YOL099C	__________	+1.07	319356	341308	unknown	unknown
YOR309C	__________	-1.37	5863098	4283357	unknown	unknown
YPR004C	__________	+1.46	678247	992557	unknown	unknown; similar to human electron transport flavoprotein
YBL099W	ATP1______	+1.51	709330	1073781	ATP synthesis	mitochondrial F1F0-ATPase subunit
YCL004W	PGS1______	-1.03	145638	141019	phospholipid metabolism	phosphatidylglycerophosphate synthase
YDL101C	DUN1______	+1.05	227508	239040	DNA repair	DNA damage-responsive protein kinase
YDR224C	HTB1______	-1.53	5478888	3588029	chromatin structure	histone H2B
YEL005C	VAB2______	+1.13	208403	235343	vacuolar protein targeting (putative)	unknown; Vac8p binding protein
YFR024C	__________	+1.17	502510	588226	unknown	unknown
YHR041C	SRB2______	-1.09	262594	240596	transcription	RNA polymerase II mediator subunit
YIR012W	SQT1______	+1.02	815696	830120	ribosome biogenesis (putative)	unknown
YJR068W	RFC2______	-1.10	560714	508534	DNA replication	replication factor C 41 kD subunit
YKR065C	__________	+1.17	561463	655396	unknown	unknown
YLR222C	__________	-1.23	508916	413376	unknown	unknown
YML092C	PRE8______	+1.11	1181847	1306562	protein degradation	20S proteasome subunit Y7 (alpha2
YNL005C	MRP7______	+1.00	390930	391748	protein synthesis	ribosomal protein, mitochondrial large subunit
YNR044W	AGA1______	-1.84	503533	274305	mating	a-agglutinin anchor subunit
YOR123C	LEO1______	-1.00	430323	430133	unknown	unknown
YPL099C	__________	+1.01	274302	275975	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YPR190C	RPC82_____	-1.13	654771	578125	transcription	RNA polymerase III 82 kD subunit
YAL018C	__________	-1.06	95949	90609	unknown	unknown
YBR182C	SMP1______	+1.10	124128	136042	cell wall organization	MADS box transcription factor
YCRX12W	__________	+1.11	100572	111405
YDR053W	__________	-1.10	126070	114989	unknown	unknown
YDR420W	HKR1______	-1.16	293081	252936	cell wall biogenesis (putative)	unknown; cell surface protein
YER115C	SPR6______	-1.28	324688	253905	sporulation	unknown
YGL113W	__________	-1.03	166839	162142	unknown	unknown
YGR220C	MRPL9_____	-1.02	488404	477374	protein synthesis	ribosomal protein, mitochondrial L9
YIL016W	SNL1______	+1.08	667706	721257	nuclear protein targeting	nuclear pore protein (putative)
YJL114W	__________	-1.08	152956	141867	unknown	unknown
YKL110C	KTI12_____	+1.04	426322	441730	killer toxin resistance	unknown
YLR044C	PDC1______	+1.07	13370049	14310549	glycolysis	pyruvate decarboxylase
YLR416C	__________	-1.25	190637	151974	unknown	unknown
YMR151W	YIM2______	-1.00	153450	153175	unknown	unknown
YNL205C	__________	-1.14	168839	148066	unknown	unknown
YOL109W	ZEO1______	-1.07	8272421	7733082	zeocin resistance	unknown
YOR321W	PMT3______	+1.09	342934	372472	protein glycosylation	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase
YPR016C	TIF6______	-1.11	142436	128878	ribosome biogenesis (putative)	unknown; similar to human translation initiation factor 6 (eIF6)
YBL109W	__________	-1.34	299662	223357	unknown	unknown
YCL017C	NFS1______	+1.29	337116	433599	tRNA splicing	unknown
YDL113C	__________	+1.36	167110	227913	unknown	unknown
YEL017C	PMP2______	-1.43	1082625	756561	H+ homeostasis	regulates plasma membrane H+-ATPase
YFR034C	PHO4______	-1.20	187699	155783	phosphate signaling	transcription factor
YHR052W	__________	-1.22	688250	562693	unknown	unknown
YIR022W	SEC11_____	+1.03	514451	529918	secretion	signal peptidase subunit
YJR080C	__________	+1.28	190741	243467	unknown	unknown; similar to Arg8p
YKR077W	__________	+1.29	200950	260059	unknown	unknown
YLR232W	__________	-1.08	100155	92944	unknown	unknown
YNL017C	__________	-1.15	134155	116519	unknown	unknown
YNR056C	BIO5______	-1.07	134717	125755	biotin biosynthesis	transmembrane regulator of KAPA/DAPA transport
YOR135C	__________	+1.25	175639	219921	unknown	unknown
YPL111W	CAR1______	+1.99	350596	696835	arginine metabolism	arginase
YPR202W	__________	+1.73	340979	589573	unknown	unknown; similar to other subtelomerically-encoded proteins
YAL029C	MYO4______	+1.02	104164	106696	cell polarity	myosin; asymmetric HO expression
YBR194W	__________	+1.13	167053	188012	unknown	unknown
YDR065W	__________	+1.07	141406	151025	unknown	unknown
YDR432W	NPL3______	-1.19	388570	326414	mRNA export; protein import	nuclear shuttling protein
YER126C	__________	-1.42	350439	246646	unknown	unknown
YGL125W	MET13_____	-1.15	236413	205729	methionine metabolism	methylenetetrahydrofolate reductase, putative
YGR232W	NAS6______	+1.20	415423	498851	protein degradation (putative)	unknown; interacts with 26S proteasome
YIL028W	__________	-1.01	134114	132590	unknown	unknown
YJL126W	NIT2______	-1.00	185839	185779	unknown	nitrilase
YKL122C	SRP21_____	-1.13	650187	572900	secretion	signal recognition particle subunit
YLR056W	ERG3______	-1.26	2592753	2065874	sterol metabolism	C-5 sterol desaturase
YLR426W	__________	+1.17	303261	354887	unknown	unknown; similar to Fox2p, E. coli 3-oxoacyl-[acyl-carrier
YMR161W	HLJ1______	-1.10	130937	119175	unknown	unknown; similar to E. coli DnaJ
YNL217W	__________	+1.18	677165	797919	unknown	unknown
YOL121C	RPS19A____	-1.15	12278023	10631558	protein synthesis	ribosomal protein S19A
YOR333C	__________	-1.24	206779	166243	unknown	unknown
YPR028W	YIP2______	+1.25	1855209	2315641	unknown	unknown; interacts with Ypt protein(s)
YBR008C	FLR1______	+1.10	158488	174992	fluconazole resistance	transporter, major facilitator superfamily
YCL029C	BIK1______	-1.15	253702	220894	mating; mitosis	microtubule-associated protein
YDL125C	HNT1______	+1.47	1179683	1733017	unknown	unknown; similar to protein kinase C inhibitor-I
YEL028W	__________	+1.13	128064	144844	unknown	unknown
YFR045W	__________	+1.13	184823	209512	unknown	unknown; similar to mitochondrial carrier family protein Ctp1p
YGR046W	__________	+1.18	285934	337317	unknown	unknown; similar to phage 1C ANTP-139 protein PIR:S46430
YHR063C	__________	+1.29	492232	637198	unknown	unknown; similar to Cbs2p
YIR033W	MGA2______	+1.21	617666	748904	transcription	chromatin remodeling (putative)
YJR093C	FIP1______	+1.09	326865	355614	mRNA polyadenylation	interacts with poly(A) polymerase
YKR089C	__________	+1.06	999368	1057670	unknown	unknown
YLR244C	MAP1______	+1.20	715084	856829	protein processing	methionine aminopeptidase
YML113W	DAT1______	-1.09	1260314	1153376	transcription (putative)	oligo(dA)/oligo(dT)-binding protein
YNL029C	KTR5______	-1.24	223174	179741	protein glycosylation	putative mannosyltransferase
YNR068C	__________	-1.14	136574	119308	unknown	unknown
YOR145C	__________	-1.15	1343146	1164989	unknown	unknown
YPL123C	RNY1______	+1.20	182377	218387	unknown	ribonuclease, T2 family
YAL039C	CYC3______	+1.37	357751	489630	cytochrome c biosynthesis	cytochrome c heme lyase
YBR206W	__________	-1.01	552254	547691	unknown	unknown
YDR077W	SED1______	+6.98	2300581	16066134	unknown	putative cell surface glycoprotein
YDR444W	__________	+1.11	275539	307151	unknown	unknown
YGL137W	SEC27_____	+1.10	172818	190454	secretion	vesicle coat component
YGR244C	LSC2______	+2.17	626107	1359433	TCA cycle	succinyl-CoA ligase
YIL040W	__________	+1.17	404586	474720	unknown	unknown
YJL138C	TIF2______	+1.14	7609694	8664088	protein synthesis	translation initiation factor eIF4A
YKL134C	OCT1______	-1.05	194106	184238	mitochondrial protein targeting	mitochondrial intermediate peptidase
YLR068W	__________	-1.31	373615	285364	unknown	unknown
YLR438W	CAR2______	+3.85	308325	1187683	arginine metabolism	ornithine aminotransferase
YNL229C	URE2______	+1.17	437926	510225	catabolite repression	inhibitor of Gln3p regulator
YOL133W	HRT1______	+1.05	339860	356771	unknown	unknown; similar to C. elegans protein of unknown function
YPR040W	__________	+1.28	378135	485122	unknown	unknown
YBR018C	GAL7______	-1.22	136092	111840	galactose metabolism	gal-1-phosphate uridyl transferase
YCL041C	__________	-1.10	146728	132985	unknown	unknown; similar to human papilloma virus (HPV) E6 protein
YDL135C	RDI1______	+1.29	732721	947205	signaling	rho GDP dissociation inhibitor for Rho1p
YDR260C	SWM1______	-1.11	214598	192525	sporulation	unknown
YEL040W	UTR2______	-1.11	2895293	2608335	unknown	unknown
YFR057W	__________	-1.30	281982	217119	unknown	unknown
YGR058W	__________	+1.05	219310	229345	unknown	unknown
YHR073W	__________	-1.33	480661	361412	unknown	unknown; similar to human oxysterol-binding protein (OSBP)
YJR104C	SOD1______	-1.36	8766346	6454506	oxidative stress response	copper-zinc superoxide dismutase
YKR101W	SIR1______	+1.02	316193	321806	silencing	reulator of silencing at HML and HMR
YLR256W	HAP1______	-1.31	10033094	7633307	transcription	heme-dependent transcription factor
YNL039W	TFC5______	+1.04	390067	403808	transcription	TFIIIB 90 kD subunit
YOR157C	PUP1______	+1.08	1680051	1806107	protein degradation	20S proteasome subunit (beta2)
YPL135W	ISU1______	+1.72	525232	901795	iron homeostasis	unknown; similar to iron-sulfur cluster protein nifU
YAL051W	OAF1______	-1.13	114040	101285	peroxisome proliferation	transcriptional activator of POX1
YBR218C	PYC2______	-1.14	629201	549995	TCA cycle	pyruvate carboxylase 2
YDR089W	__________	+1.05	173519	182495	unknown	unknown
YDR456W	NHX1______	+1.09	390845	427070	transport	Na+/H+ antiporter
YER147C	__________	-1.00	175447	174576	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YGL149W	__________	-1.02	142575	139455	unknown	unknown
YGR256W	GND2______	+1.09	1138264	1241520	pentose phosphate cycle	6-phosphogluconate dehydrogenase
YIL052C	RPL34B____	-1.53	15760239	10283882	protein synthesis	ribosomal protein L34B
YJL150W	__________	-1.30	333158	255380	unknown	unknown
YKL146W	__________	-1.05	290336	276842	unknown	unknown; similar to members of a putative transporter family
YLR080W	__________	-1.14	158405	139546	unknown	unknown
YLR450W	HMG2______	-1.05	445659	423767	sterol metabolism	3-hydroxy-3-methylglutaryl-coenzyme A reductase
YMR183C	SSO2______	+1.10	965369	1062429	secretion	post-Golgi t-SNARE
YNL241C	ZWF1______	+2.03	403303	818228	pentose phosphate cycle	glucose-6-phosphate dehydrogenase
YOL145C	CTR9______	-1.04	738428	707888	mitosis, chromosome segregation	unknown
YOR355W	GDS1______	+1.10	611057	672198	respiration (putative)	unknown; suppresses nam9-1
YPR052C	NHP6A_____	+1.08	697957	750418	chromatin structure	non-histone protein
YBR030W	__________	-1.12	243333	216364	unknown	unknown; similar to Sin3p
YCL053C	__________	-1.03	540641	526131
YDL147W	RPN5______	+1.11	1296095	1434095	protein degradation	26S proteasome subunit
YDR268W	MSW1______	+1.10	221173	243985	protein synthesis	tRNA synthetase, mitochondrial, Trp
YEL052W	AFG1______	+1.10	440445	484083	unknown	unknown; similar to members of the AAA family
YGR070W	ROM1______	+1.17	105834	123577	signaling	GDP/GTP exchange protein for Rho1p
YHR084W	STE12_____	-1.14	273858	239969	mating and pseudohyphal growth	transcription factor
YJR116W	__________	-1.11	308940	278124	unknown	unknown
YLR264W	RPS28B____	-1.56	8252396	5275463	protein synthesis	ribosomal protein S28B
YMR003W	__________	+1.02	269380	273498	unknown	unknown
YNL051W	__________	-1.02	141283	137865	unknown	unknown
YOR169C	__________	-1.47	2165163	1476806	unknown	unknown
YPL147W	PXA1______	-1.04	158277	152100	transport	long-chain fatty acid transporter, ABC family
YBR230C	__________	+1.50	244463	365602	unknown	unknown
YDR099W	BMH2______	+1.13	2652634	3000629	unknown	suppresses clathrin deficiency
YDR468C	TLG1______	+1.20	416621	501103	endocytosis	late Golgi t-SNARE
YER158C	__________	+1.64	172452	282552	unknown	unknown; similar to Afr1p
YGL161C	__________	+1.05	446657	470351	unknown	unknown
YGR268C	__________	+1.75	248402	433604	unknown	unknown
YIL064W	__________	-1.45	1022368	704542	unknown	unknown
YJL162C	__________	-2.03	1093139	538673	unknown	unknown; similar to E. coli DnaJ and other DnaJ-like
YKL158W	__________	+1.02	118324	121088
YLR092W	SUL2______	+1.18	134741	158849	transport	sulfate permease
YLR462W	__________	+1.61	232464	373763	unknown	unknown
YNL253W	__________	+1.26	285874	360218	unknown	unknown
YOL157C	__________	-1.03	206969	200470	unknown	putative alpha-glucosidase
YOR367W	SCP1______	-1.05	547979	519668	cytoskeleton (putative)	calponin homolog
YPR064W	__________	-1.09	126518	116361	unknown	unknown
YBR042C	__________	-1.04	324745	313600	unknown	unknown
YCL065W	__________	-3.15	603323	191480	unknown	unknown
YDL159W	STE7______	-1.03	253901	246826	signaling, pheromone and pseudohyphal growth pathways	MAPKK (mitogen-activated protein kinase kinase)
YDR280W	RRP45_____	-1.17	742276	632353	rRNA processing	3'->5' exoribonuclease
YEL063C	CAN1______	+1.18	320822	377684	transport	basic amino acid permease
YGR082W	TOM20_____	-1.40	919059	657730	mitochondrial protein targeting	mito. import receptor
YHR096C	HXT5______	-2.27	953542	419946	transport	hexose permease
YJR128W	__________	-1.15	132349	115252	unknown	unknown
YLR276C	DBP9______	-1.46	812925	556815	unknown	putative RNA helicase
YMR015C	ERG5______	-1.68	1006021	598375	sterol metabolism	C-22 sterol desaturase
YNL061W	NOP2______	-1.12	1083256	969676	nuclear organization	nucleolar protein
YOR181W	LAS17_____	-1.23	339238	275155	cytoskeleton	cortical actin patch component
YPL159C	__________	+1.61	269051	433667	unknown	unknown
YAR010C	__________	-1.22	110823	90493	unknown	unknown
YBR242W	__________	-1.51	642146	426439	unknown	unknown
YDR111C	__________	+1.12	182954	204918	unknown	unknown; similar to alanine aminotransferase (GB:Z48758)
YDR480W	DIG2______	-1.27	203417	160762	invasive growth	negative regulator
YER167W	BCK2______	+1.33	263797	350957	signaling	protein kniase C pathway
YGL173C	KEM1______	+1.17	1079417	1259884	mRNBA decay	DNA and RNA exonuclease
YGR280C	__________	-1.12	1347435	1204054	unknown	unknown
YIL073C	SPO22_____	+1.19	257824	306553	sporulation	phospholipase A2, meiosis-specific
YJL174W	KRE9______	+1.59	944549	1503165	cell wall biogenesis	beta-1,6-glucan assembly
YKL170W	MRPL38____	-1.32	425168	321684	protein synthesis	ribosomal protein, mitochondrial L38
YLR104W	__________	+1.52	223989	339850	unknown	unknown
YMR206W	__________	-1.11	138665	125020	unknown	unknown
YNL265C	IST1______	+1.22	335173	410555	salt tolerance (putative)	unknown; similar to Nuf1p
YOR003W	YSP3______	+1.03	235187	243224	protein degradation	subtilisin-like protease III
YOR379C	__________	-1.44	163530	113783	unknown	unknown
YPR076W	__________	+1.20	139603	166832	unknown	unknown
YBR054W	YRO2______	+1.02	708781	726289	unknown	putative heat shock protein
YCLX04W	__________	+1.53	156725	239192
YDL171C	GLT1______	-1.04	789147	757429	glutamate biosynthesis	glutamate synthase (NAPDPH) (GOGAT)
YDR292C	SRP101____	-1.09	115449	106340	secretion	signal recognition particle receptor subunit
YEL075C	__________	+1.48	170374	251772	unknown	unknown; similar to other subtelomerically-encoded proteins
YGR094W	VAS1______	-1.03	298216	290164	protein synthesis	tRNA synthetase, valyl
YHR108W	GGA2______	+1.09	1147542	1256146	secretion (putative)	unknown; binds ARF
YJR140C	HIR3______	-1.02	538557	526686	transcription	regulator of histone transcription
YMR027W	HRT2______	+1.33	406849	541901	transposition, Ty3 (putative)	unknown
YNL073W	MSK1______	+1.09	235559	256116	protein synthesis	tRNA synthetase, mitochondrial, lysyl
YPL171C	OYE3______	+1.01	109776	111402	unknown	NAPDH dehydrogenase (old yellow enzyme)
YAR033W	__________	+1.03	204817	211397	unknown	unknown; similar to subtelomerically-encoded proteins
YBR254C	TRS20_____	+1.01	330828	332485	secretion (putative)	transport protein particle (TRAPP) subunit, 20 kD
YDR123C	INO2______	-1.09	173007	158024	phospholipid biosynthesis	transcription factor
YDR492W	__________	-1.20	500513	417841	unknown	unknown
YER178W	PDA1______	+1.49	2130305	3176188	glycolysis	pyruvate dehydrogenase
YGL185C	__________	+1.16	243967	281817	unknown	unknown; similar to D-2-hydroxyacid dehydrogenase
YGR292W	MAL12_____	-1.05	124618	118228	maltose utilization	alpha-glucosidase
YIL084C	SDS3______	-1.11	151906	136866	silencing	(putative) transcriptional regulator
YJL186W	MNN5______	-1.04	782968	751520	protein glycosylation	alpha-1,2-mannosyltransferase (putative)
YKL182W	FAS1______	-1.02	106590	104691	fatty acid metabolism	fatty-acyl-CoA synthase, beta subunit
YLR116W	MSL5______	-1.05	210663	201347	mRNA splicing	branchpoint bridging protein (commitment complex component)
YMR218C	TRS130____	-1.10	153224	139400	secretion	membrane targeting complex (TRAPP) subunit
YNL277W	MET2______	+1.13	206659	233481	methionine biosynthesis	homoserine O-acetyltransferase
YOR015W	__________	+1.17	540989	632061	unknown	unknown
YOR391C	__________	-1.07	125041	116733	unknown	unknown
YPR088C	SRP54_____	-1.17	1214193	1034023	secretion	signal recognition particle subunit
YBR066C	NRG2______	-1.05	122072	116670	unknown	unknown
YCR004C	YCP4______	+1.15	1058669	1220977	unknown	unknown; similar to S. pombe brefeldin A resistance protein
YDL183C	__________	+1.01	166001	167251	unknown	unknown
YDR304C	CYP5______	-1.11	758733	686319	protein folding	peptidyl-prolyl cis-trans isomerase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YGR106C	__________	-1.07	1979101	1854476	unknown	unknown; similar to Vibrio anguillarum chemotaxis methyl
YHR120W	MSH1______	-1.26	354992	282212	DNA repair	MutS homolog; mitochondrial DNA repair
YJR152W	DAL5______	+1.22	214967	262675	allantoin utilization	allantoate permease
YLR299W	ECM38_____	+1.25	156065	194716	glutathione biosynthesis	gamma-glutamyltransferase
YMR038C	LYS7______	-1.26	617725	490058	oxidative stress response	copper chaperone for superoxide dismutase Sod1p
YNL085W	MKT1______	-1.06	735634	691857	viral propagation	retroviral protease signature protein
YOR203W	__________	-1.26	611129	484835	unknown	unknown
YPL183C	__________	-1.13	775524	687611	unknown	unknown
YBL005W	TY1A______	-1.19	2695370	2270062	unknown	unknown
YBR266C	__________	-1.31	285247	216974	unknown	unknown
YDL005C	MED2______	-1.31	354750	270250	transcription	RNA polymerase II mediator subunit
YDR135C	YCF1______	-1.16	390079	336615	transport	vacuolar glutathione S-conjugate transporter
YDR504C	__________	-1.44	326227	225940	unknown	unknown
YFL003C	MSH4______	-1.03	147054	142200	meiosis, recombination	MutS homolog
YGL197W	MDS3______	-1.09	106445	97803	meiosis	gene expression regulator (putative)
YHL004W	MRP4______	-1.14	375144	329217	protein synthesis	ribosomal protein, mitochondrial small sunubit
YIL096C	__________	-1.27	450522	354900	unknown	unknown
YJL198W	__________	-1.10	206787	188564	unknown	unknown; similar to Pho87p, member of the phosphate
YKL194C	MST1______	-1.12	106703	94859	protein synthesis	tRNA synthetase, mitochondrial, threonyl
YLR128W	__________	+1.09	143946	156843	unknown	unknown
YML005W	__________	-1.03	186450	180855	unknown	unknown
YNL287W	SEC21_____	+1.26	971167	1223247	secretion	vesicle coat component
YOR027W	STI1______	+1.26	946269	1196862	protein folding	component of Hsp70-Hsp90 complexes
YPL005W	__________	+1.02	138634	141987	unknown	unknown
YPR100W	__________	-1.26	925072	735286	unknown	unknown
YBR078W	ECM33_____	+1.53	1470078	2256021	cell wall biogenesis	unknown
YCR016W	__________	-1.68	439582	261340	unknown	unknown
YDL195W	SEC31_____	+1.03	210267	215616	secretion	vesicle coat component
YDR316W	__________	-1.25	261256	209822	unknown	unknown
YER018C	SPC25_____	+1.13	202822	229776	cytoskeleton	spindle pole body component
YGL005C	__________	-1.06	245350	231712	unknown	unknown; similar to Xenopus kinesin-related protein Eg5
YGR116W	SPT6______	-1.10	267706	243850	transcription	elongation factor
YJL005W	CYR1______	-1.39	14650564	10555601	cell cycle	adenylate cyclase
YKL005C	__________	-1.05	270732	257461	unknown	unknown; similar to Drosophila transcription factor TFIIS,
YLL005C	__________	-1.10	200400	181550	unknown	unknown
YLR311C	__________	-1.15	145020	126103	unknown	unknown
YMR049C	__________	+1.48	362165	534416	unknown	unknown
YNL097C	PHO23_____	-1.19	285510	239879	phosphate signaling	transcriptional regulator of PHO5
YOL005C	RPB11_____	+1.18	725815	856480	transcription	RNA polymerase II subunit
YOR215C	__________	+1.24	321778	400302	unknown	unknown
YPL194W	DDC1______	-1.04	127287	121971	cell cycle, checkpoint	unknown
YAR061W	__________	-1.08	120302	111143	unknown	unknown; similar to N-terminus of Flo1p
YBL015W	ACH1______	+1.12	143585	160784	acetyl-CoA metabolism	acetyl-CoA hydrolase
YBR278W	DPB3______	+1.10	168441	186071	DNA replication	polymerase epsilon C subunit
YDL017W	CDC7______	+1.06	155353	165155	cell cycle	S phase protein kinase
YDR147W	EKI1______	+1.07	245481	262290	phospholipid metabolism	ethanolamine kinase
YDR516C	__________	+1.30	170047	221602	unknown	unknown; similar to Glk1p
YFL013C	__________	-1.04	212079	203804	unknown	unknown; similar to Ifh1p and Nab3p
YGL209W	MIG2______	-1.09	107115	98162	glucose repression	transcriptional repressor
YHL013C	__________	-1.00	392977	392748	unknown	unknown
YIL107C	PFK26_____	+1.29	156042	201602	fructose and mannose metabolism	6-Phosphofructose-2-kinase
YJL210W	PEX2______	+1.35	264238	357250	peroxisome biogenesis	integral membrane protein
YKL206C	__________	+1.23	310729	381262	unknown	unknown
YLR140W	__________	-1.00	119806	119474	unknown	unknown
YML014W	__________	-1.11	580298	523862	unknown	unknown; similar to Diptheria toxin resistance protein
YMR242C	RPL20A____	-1.40	13346689	9549951	protein synthesis	ribosomal protein L20A
YNL299W	TRF5______	-1.16	201419	173168	mitosis	related to DNA topoisomerase I
YOR039W	CKB2______	+1.05	697349	732912	salt tolerance	casein kinase II regulatory subunit
YPL017C	__________	-1.05	218247	207236	unknown	unknown; similar to Lpd1p
YPR112C	MRD1______	-1.21	140192	115961	unknown	unknown; similar to Pab1p, Pub1p, Nsr1p, Nop4p and other
YBR089W	__________	+1.01	393550	399362	unknown	unknown
YCR026C	__________	+1.04	165343	171638	unknown	unknown; similar to human plasma membrane glycoprotein PCI
YDL207W	GLE1______	-1.00	300398	299603	mRNA export	unknown
YDR326C	__________	-1.05	136189	129916	unknown	unknown
YER029C	SMB1______	-1.25	359591	287796	mRNA splicing	U1 snRNP protein
YGL017W	ATE1______	+1.14	196903	224206	protein synthesis	tRNA transferase, arginyl
YGR128C	__________	-1.16	336199	290923	unknown	unknown; similar to Haemophilus glutamate-ammonia-ligase
YHR142W	CHS7______	+1.63	475680	776598	cell wall biogenesis	ER membrane protein; chitin synthase export
YJL017W	__________	+1.15	151318	174553	unknown	unknown
YKL016C	ATP7______	+1.80	1090028	1963332	ATP synthesis	F1F0-ATPase complex, FO D subunit
YLL017W	__________	+1.14	145869	166516	unknown	unknown
YLR322W	__________	-1.10	121084	109643	unknown	unknown
YMR059W	SEN15_____	+1.18	225650	265805	tRNA splicing	splicing endonuclease subunit
YNL109W	__________	-1.17	445796	379696	unknown	unknown
YOL017W	__________	-1.12	156623	139466	unknown	unknown
YOR227W	__________	+1.26	478472	603732	unknown	unknown
YPL206C	__________	+1.45	466247	677189	unknown	unknown; similar to Mycoplasma genitalium glycerophosphoryl
YBL027W	RPL19B____	-1.01	15760938	15554602	protein synthesis	ribosomal protein L19B
YBR290W	BSD2______	+1.07	312137	335207	transport	Cu(2+) transporter
YDL029W	ARP2______	+1.19	619252	737749	cytoskeleton	actin-related protein
YDR159W	SAC3______	-1.13	393452	349616	leucine transport	nuclear protein
YDR528W	HLR1______	-1.01	314085	311080	trehalose metabolism (putative)	unknown; pKA antagonist
YFL022C	FRS2______	+1.02	1139239	1167436	protein synthesis	tRNA synthetase, phenylalanyl
YGL221C	NIF3______	+1.16	612871	711448	unknown	unknown
YHL025W	SNF6______	+1.11	430961	480214	transcription	component of SWI/SNF global activator complex
YIL119C	RPI1______	-1.36	183855	134795	signaling, Ras pathway	negative regulator of ras-cAMP pathway
YJL222W	VTH2______	-1.03	105845	102763	vacuolar protein targeting	unknown; similar to Vps10p
YKL218C	SRY1______	+2.03	169637	344722	serine metabolism	serine racemase
YLR152C	__________	+1.28	122049	156024	unknown	unknown; similar to Ecm3p
YNL311C	__________	+1.25	192565	240653	unknown	unknown
YOR051C	__________	-1.06	1138738	1070865	unknown	unknown
YPL029W	SUV3______	-1.15	229371	199550	RNA processing, mitochondrial	RNA helicase
YPR124W	CTR1______	-1.75	1086282	619523	transport	copper transporter
YBR100W	__________	+1.15	159101	182946	unknown	unknown
YCR037C	PHO87_____	+1.04	139460	145243	transport	inorganic phosphate permease
YDL219W	__________	-1.02	406324	396931	unknown	unknown
YDR338C	__________	+1.01	134945	136065	unknown	unknown
YER040W	GLN3______	-1.01	237367	235151	nitrogen catabolite repression	transcription factor
YGL029W	CGR1______	-1.19	781006	657700	unknown	unknown; similar to human chromatin assembly factor I p150
YGR140W	CBF2______	+1.02	97885	99666	mitosis	kinetochore protein complex CBF3, 110 KD subunit

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YHR153C	SPO16_____	-1.03	128523	125281	meiosis, spore formation	unknown
YJL029C	VPS53_____	+1.20	238464	285393	vacuolar protein targeting (putative)	unknown
YKL028W	TFA1______	+1.09	407400	442656	transcription	TFIIE 66 kD subunit
YLL029W	__________	+1.14	302125	344478	unknown	unknown
YLR334C	__________	-2.26	2866385	1268350	unknown	unknown
YMR071C	__________	+2.45	689764	1690730	unknown	unknown
YNL121C	TOM70_____	+1.06	472070	498537	mitochondrial protein targeting	outer membrane translocase component
YOL029C	__________	-1.23	464847	378952	unknown	unknown
YOR239W	ABP140____	-1.05	436758	414058	cytoskeleton	F-actin binding protein
YPL218W	SAR1______	+1.43	2646231	3772108	secretion	GTP-binding protein of the ARF family
YER189W	__________	+1.01	163905	165767	unknown	unknown; similar to subtelomerically-encoded proteins
YBL039C	URA7______	+1.14	600805	684658	pyrimidine biosynthesis	CTP synthase 1
YBR302C	COS2______	+2.58	613160	1583254	unknown	unknown; similar to subtelomerically-encoded proteins
YDL041W	__________	-1.08	113938	105930	unknown	unknown
YDR540C	__________	+1.04	134372	139553	unknown	unknown
YGL232W	__________	-1.26	454445	361994	unknown	unknown; similar to dihydropteroate synthase
YHL036W	MUP3______	+1.31	167998	219393	transport	methionine permease
YIL131C	FKH1______	+1.07	93436	99857	unknown	unknown; similar to Drosophila fork head protein
YJR010W	MET3______	-1.05	240935	230195	methionine biosynthesis	sulfate adenylyltransferase
YKR005C	__________	-1.04	117524	112733	unknown	unknown
YLR162W	__________	+1.16	585574	681775	unknown	unknown
YMR266W	__________	-1.10	118114	107008	unknown	unknown
YNL323W	BRE3______	+1.10	252792	277552	secretion (putative)	unknown; brefeldin A sensitive
YOR063W	RPL3______	-1.05	13420053	12809270	protein synthesis	ribosomal protein L3
YPL041C	__________	-1.05	268294	255797	unknown	unknown
YPR136C	__________	-1.12	207000	184988	unknown	unknown
YBR111C	YSA1______	+1.20	718970	863212	unknown	unknown; similar to Drosophila serendipity protein
YCR049C	__________	-1.16	123169	106412	unknown	unknown
YDL231C	BRE4______	-1.00	188503	188085	secretion (putative)	unknown; major facilitator superfamily; brefeldin A sensitive
YDR350C	TCM10_____	+1.49	200775	298203	unknown	unknown
YER050C	__________	-1.12	362204	323063	unknown	unknown
YGL041C	__________	-1.06	274447	259248	unknown	unknown
YGR152C	RSR1______	+1.15	382739	440844	bud site selection	GTP-binding protein, ras superfamily
YHR165C	PRP8______	+1.07	105445	113251	mRNA splicing	U4/U6, U5 snRNP protein
YJL042W	MHP1______	+1.06	119103	125655	cytoskeleton	microtubule-associated protein
YKL039W	PTM1______	+1.61	536736	864122	unknown	unknown; similar to Yhl017p, member of the major facilitator superfamily
YLL041C	SDH2______	+1.55	303011	468527	TCA cycle, oxidative phosphorylation	succinate dehydrogenase
YLR346C	__________	+1.19	117596	139546	unknown	unknown
YMR082C	__________	-1.05	102010	96957	unknown	unknown
YNL133C	__________	+1.20	172116	206734	unknown	unknown
YOL041C	NOP12_____	+1.02	124833	127533	unknown	unknown; nucleolar protein
YOR251C	__________	+1.26	561461	705372	unknown	unknown; similar to thiosulfate sulfurtransferases
YPL230W	USV1______	-1.52	328211	215319	unknown	unknown; expression increases upon starvation
YBL051C	__________	+1.10	446202	492601	unknown	unknown; similar to RNA-binding proteins, contains 1 RRM domain
YDL053C	__________	-1.07	470699	439342	unknown	unknown
YDR180W	SCC2______	-1.09	278409	254406	mitosis, sister chromatid cohesion	unknown; binds chromosomes
YFL044C	__________	+1.12	137351	153392	unknown	unknown
YGL244W	RTF1______	+1.01	384826	387306	transcription	regulator of Spt15 DNA binding properties
YHL047C	TAF1______	+1.08	184983	199110	transport	triacetylfusarinine C transporter
YIL143C	SSL2______	+1.16	215189	249628	transcription; DNA repair	TFIIH helicase
YJR021C	REC107____	+1.12	197734	220682	meiosis, recombination	ds break formation complex subunit
YKR017C	__________	+1.14	149291	170448	unknown	unknown
YLR174W	IDP2______	+1.27	117464	149662	TCA cycle	isocitrate dehydrogenase
YML046W	PRP39_____	-1.06	161232	152240	mRNA splicing	U1 snRNP protein
YMR278W	__________	+1.29	199378	258067	unknown	unknown; similar to phosphomannomutase
YNL335W	__________	+1.23	127069	156449	unknown	unknown; similar to Myrothecium verrucaria cyanamide hydratase
YOR075W	UFE1______	+1.24	289336	359391	secretion	ER membrane t-SNARE
YPL053C	KTR6______	+1.23	348072	429567	protein glycosylation	mannosylphosphate transferase
YPR146C	__________	+1.27	247310	314439	unknown	unknown
YBR123C	TFC1______	-1.08	282440	262274	transcription	TFIIIC 95 kD subunit
YCR061W	__________	-1.19	185808	156672	unknown	unknown
YDL243C	AAD4______	+1.15	241830	277698	unknown	hypothetical aryl-alcohol dehydrogenase
YDR362C	TFC6______	+1.01	224488	226237	transcription	TFIIIC 91 kD subunit
YGL053W	__________	+1.24	323949	402399	unknown	unknown
YHR177W	__________	+1.23	141957	174551	unknown	unknown
YJL054W	TIM54_____	+1.01	117990	118593	mitochondrial protein targeting	inner membrane translocase component
YKL051W	__________	+1.20	265536	317555	unknown	unknown
YLL053C	__________	-1.33	307828	231095	unknown	unknown; similar to putative aquaporin Ypr192p, member of
YLR358C	__________	+1.02	289188	294825	unknown	unknown
YMR093W	__________	+1.44	649933	937148	unknown	unknown
YNL145W	MFA2______	+5.69	113605	646075	mating	a-factor precursor
YOR263C	__________	+1.10	182106	199801	unknown	unknown; similar to adenosine A1 receptors
YPL242C	IQG1______	-1.01	119159	117917	cytoskeleton	IQGAP homolog
YBL063W	KIP1______	-1.01	109786	109024	mitosis, spindle assembly	kinesin related protein
YDL065C	PEX19_____	+1.11	371847	411152	peroxisome biogenesis	unknown
YDR192C	NUP42_____	+1.05	170722	179614	nuclear protein targeting	nuclear pore protein
YFL056C	AAD6______	+1.25	198656	248521	unknown	hypothetical aryl-alcohol dehydrogenase
YGL256W	ADH4______	+1.03	364000	374401	glycolysis	alcohol dehydrogenase IV
YHR007C	ERG11_____	+1.06	2034021	2159965	sterol metabolism	cytochrome P450 lanosterol 14a-demethylase
YIL155C	GUT2______	+1.29	172545	222372	glycerol metabolism	glycerol-3-phosphate dehydrogenase, mitochondrial
YJR032W	CPR7______	+1.19	443684	527616	protein folding	peptidyl-prolyl cis/trans isomerase
YKR029C	__________	+1.17	197517	231404	unknown	unknown; similar to E(z) Enhancer of zeste in the C-terminal
YLR186W	__________	-1.07	941576	880208	unknown	unknown
YMR290C	HAS1______	-1.20	1269644	1057625	unknown	RNA helicase
YNR008W	LRO1______	+1.01	160015	161117	sterol metabolism (putative)	lecithin cholesterol acyl transferase (putative)
YOR087W	__________	-1.04	165098	158909	unknown	unknown
YPL063W	__________	-1.13	1166841	1028239	unknown	phosphatase
YPR158W	__________	+1.21	287542	349190	unknown	unknown
YBR135W	CKS1______	+1.06	1085060	1151138	cell cycle	portein kinase regulator
YCR072C	__________	-1.12	318650	285266	unknown	unknown; similar to nuclear mRNA processing protein Prp4p
YDR007W	TRP1______	+1.21	539056	651277	tryptophan biosynthesis	phosphoribosylanthranilate isomerase
YDR372C	__________	+1.06	421891	448424	unknown	unknown
YER069W	ARG5,6____	-1.12	212406	189015	arginine biosynthesis	acetylglutamate kinase and acetylglutamyl-phosphate reductase
YGL065C	ALG2______	-1.10	290525	265199	protein glycosylation	glycosyltransferase
YGR172C	YIP1______	+1.02	661448	677977	unknown	unknown; interacts with Ypt protein(s)
YHR189W	__________	+1.08	111301	120571	protein synthesis	tRNA hydrolase, peptidyl, putative
YJL066C	__________	+1.55	224983	348829	unknown	unknown
YKL063C	__________	+1.06	456708	482407	unknown	unknown
YLL065W	GIN11_____	-1.09	160810	147623	unknown	growth inhibitor
YLR370C	ARC18_____	+1.11	777217	860578	cytoskeleton	cortical actin patch integrity; Arp2/3 complex subunit

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YMR105C	PGM2______	+1.60	170569	272362	glycolysis	phosphoglucomutase
YNL157W	__________	+1.97	650411	1282092	unknown	unknown
YOL063C	__________	+1.08	128323	139119	unknown	unknown
YOR275C	__________	+1.16	209208	243491	unknown	unknown
YPL253C	VIK1______	+1.13	200254	226086	nuclear fusion (putative)	Kar3p interactor
YMR320W	__________	+1.04	152076	157995	unknown	unknown
YBL075C	SSA3______	+1.11	263601	292471	ER and mitochondrial translocation	cytosolic HSP70
YDL077C	VAM6______	+1.03	232990	239042	protein degradation	vacuolar carboxypeptidase Y
YDR204W	COQ4______	+1.43	262792	376742	ubiquinone biosynthesis	unknown
YFL068W	__________	+2.09	969244	2030281	unknown	unknown; similar to other subtelomerically-encoded proteins
YGR005C	TFG2______	+1.09	465092	505526	transcription	TFIIF 54 kD subunit
YHR019C	DED81_____	+1.10	4346234	4786957	protein synthesis	tRNA synthetase, arparaginyl
YIL166C	__________	-1.12	228763	205014	unknown	unknown; major facilitator superfamily
YJR044C	__________	+1.69	500693	848082	unknown	unknown; similar to Drosophila yakuba NADH dehydrogenase
YKR041W	__________	-1.08	159651	148012	unknown	unknown
YLR198C	__________	-1.23	3848740	3132374	unknown	unknown
YML068W	__________	+1.10	235575	258479	unknown	unknown
YMR300C	ADE4______	-1.07	964955	898850	purine biosynthesis	amidophosphoribosyltransferase
YNR020C	__________	+1.03	273801	281409	unknown	unknown
YOR099W	KTR1______	+1.69	1149570	1938061	protein glycosylation	mannosyltransferase
YPL075W	GCR1______	-1.14	201930	177734	glycolysis	transcriptional activator
YPR166C	MRP2______	-1.02	348074	341887	protein synthesis	ribosomal protein, mitochondrial S14
YBR147W	__________	-1.15	110522	96147	unknown	unknown
YCR085W	__________	-1.16	123143	106328	unknown	unknown
YDR019C	GCV1______	+1.24	185983	230345	amino acid metabolism	glycine decarboxylase T subunit
YDR384C	__________	-1.98	513735	260101	unknown	unknown; similar to Y. lipolytica Gpr1p
YER081W	SER3______	+1.17	560908	657228	serine biosynthesis	3-phosphoglycerate dehydrogenase
YGL077C	HNM1______	-1.04	616192	593124	transport	choline permease
YGR184C	UBR1______	+1.00	109384	109740	protein degradation, ubiquitin-mediated	ubiquitin-protein ligase
YHR201C	PPX1______	+1.08	1050913	1130565	unknown	vacuolar exopolyphosphatase
YJL078C	PRY3______	+1.01	110805	111957	unknown	unknown; similar to plant PR-pathogen related proteins
YKL075C	__________	+1.10	240052	264745	unknown	unknown
YLR010C	__________	+1.04	157464	163097	unknown	unknown
YLR382C	NAM2______	+1.08	173313	186637	protein synthesis	tRNA synthetase, mitochondrial, leucyl
YNL169C	PSD1______	-1.22	251485	205971	phospholipid metabolism	phosphatidylserine decarboxylase
YOL075C	__________	+1.02	246363	252196	unknown	putative ATP-dependent transporter
YOR287C	__________	-1.38	577368	419191	unknown	unknown; similar to PITSLRE protein kinase isoforms
YPL263C	KEL3______	-1.10	308561	281260	unknown	unknown; similar to Kel1p and Kel2p
YBL087C	RPL23A____	-1.45	13024230	8995806	protein synthesis	ribosomal protein L23A
YDL089W	__________	-1.19	205108	173054	unknown	unknown
YDR212W	TCP1______	-1.16	1295573	1112655	protein folding	cytoplasmic chaperonin complex
YFR012W	__________	-1.68	226765	135139	unknown	unknown
YGR017W	__________	+1.02	125173	127957	unknown	unknown; similar to Nmd2p
YHR030C	SLT2______	+2.86	1575325	4501543	signaling, PKC1 pathway	MAP kinase (mitogen-activated protein kinase)
YIL177C	__________	+1.98	795764	1575911	unknown	unknown; similar to subtelomerically-encoded proteins
YJR056C	__________	+1.02	341186	347780	unknown	unknown
YKR053C	YSR3______	+1.73	281088	486462	sphingolipid metabolism	dihydrosphingosine-1-phosphate phosphatase
YLR210W	CLB4______	+1.06	207922	219720	cell cycle	G2/M cyclin
YML080W	__________	-1.16	514519	444616	unknown	unknown; similar to Azospirillum brasilense nifR3
YMR310C	__________	-1.27	705453	553499	unknown	unknown
YNR032W	PPG1______	+1.27	296063	376952	glycogen metabolism	protein phosphatase
YOR111W	__________	-1.16	236114	203541	unknown	unknown
YPL087W	YDC1______	+1.41	506083	711336	sphingolipid metabolism	dihyroceramidase
YPR178W	PRP4______	+1.03	337524	348910	mRNA splicing	U4/U6 snRNP protein
YBR159W	__________	+1.05	958348	1002605	unknown	unknown; similar to human estradiol
YCR096C	HMRA2_____	-1.83	725407	395689	unknown	mating type a specific
YDR031W	__________	+1.09	203761	222210	unknown	unknown
YDR396W	__________	-1.03	646424	626297	unknown	unknown
YER092W	__________	+1.45	403131	582531	unknown	unknown
YGL089C	MF(ALPHA)2	-18.75	4160616	221927	mating	alpha factor
YGR196C	__________	-1.16	307532	265016	unknown	unknown
YHR213W	__________	-1.18	185235	156411	unknown	unknown; similar to the N-terminus of Flo1p
YJL090C	DPB11_____	-1.02	242183	238064	DNA replication	DNA polymerase II complex
YKL087C	CYT2______	+1.05	335511	353957	cytochrome c1 biosynthesis	cytochrome c1 heme lyase
YLR022C	__________	-1.22	784040	642760	unknown	unknown
YLR394W	CST9______	+1.23	210106	258035	meiosis, synapsis	unknown
YMR128W	ECM16_____	-1.53	732663	479256	cell wall biogenesis	unknown
YNL181W	__________	+1.04	416504	433857	unknown	unknown
YOL087C	__________	+1.11	268033	296908	unknown	unknown
YPL275W	__________	-1.21	129864	107349	unknown	unknown; similar to formate dehydrogenases
YAL007C	ERP2______	+1.02	539803	551489	membrane trafficking; secretion (putative)	unknown
YBR171W	SEC66_____	+1.01	370616	373350	secretion	ER protein translocation subcomplex subunit
YCRX01W	__________	+1.03	98285	101703
YDR042C	__________	-1.08	113594	105380	unknown	unknown
YDR409W	__________	-1.13	893058	792597	unknown	unknown; similar to Nfi1p
YER104W	RTT105____	-1.09	177988	163107	transposition (putative)	unknown
YGL102C	__________	+1.01	15690378	15892214	unknown	unknown
YGR209C	TRX2______	-1.12	2917944	2610534	DNA replication	thioredoxin II
YIL006W	__________	-1.31	273018	208327	unknown	unknown; similar to Flx1p, Yel006p, and other members of
YJL103C	__________	+1.07	174560	186371	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YKL099C	__________	-1.60	845241	526733	unknown	unknown; similar to human kinesin heavy chain
YLR035C	MLH2______	-1.03	179677	174525	DNA repair	MutL homolog; mismatch repair; non-Mendelian segregation
YLR407W	__________	+1.42	214903	305300	unknown	unknown
YMR140W	__________	+1.24	145151	179962	unknown	unknown
YNL194C	__________	-1.03	129883	126539	unknown	unknown; similar to Sur7p
YOL100W	PKH2______	+1.09	279715	303678	unknown	protein kinase (ser/thr)
YOR310C	NOP58_____	-1.08	3046801	2832584	ribosome biogenesis	nucleolar protein
YPR005C	HAL1______	+1.14	166976	190106	salt tolerance	unknown
YBL100C	__________	-1.52	193088	127402	unknown	unknown
YCL005W	__________	-1.26	305478	242655	unknown	unknown
YDL102W	CDC2______	-1.15	179136	156055	DNA replication	DNA polymerase delta catalytic 125 KD subunit
YDR225W	HTA1______	-1.94	6696164	3457140	chromatin structure	histone H2A
YEL006W	__________	-1.22	276340	226403	unknown	unknown; similar to Aac1p, Pet9p, Aac3p, Yil006p and other
YFR025C	HIS2______	-1.06	197901	186458	histidine biosynthesis	histidinol phosphatase
YGR028W	MSP1______	+1.78	196583	349180	mitochondrial protein targeting	AAA-ATPase
YHR042W	NCP1______	+1.17	203075	236589	microsomal electron transfer	NADP-cytochrome P450 reductase
YIR013C	GAT4______	+1.03	116058	119222	transcription (putative)	DNA binding protein, GATA family
YJR069C	HAM1______	+1.03	661149	684025	6-N-hydroxylaminopurine resistance	unknown
YKR066C	CCP1______	+1.81	675000	1218384	oxidative stress response	cytochrome-c peroxidase
YLR223C	IFH1______	+1.01	467208	471078	rRNA processing	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YML093W	__________	-1.06	377825	357183	unknown	unknown
YNL006W	LST8______	+1.29	363767	468189	secretion	unknown; post-Golgi
YNR045W	PET494____	+1.07	251529	269191	protein synthesis	translation activator of COX3
YOR124C	UBP2______	+1.27	627180	798273	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YPL100W	__________	+1.13	228359	257653	unknown	unknown; similar to Yfr021p
YPR191W	QCR2______	+1.54	716595	1106800	oxidative phosphorylation	ubiquinol--cytochrome-c reductase 40 kD subunit
YAL019W	FUN30_____	-1.13	235846	208902	unknown	unknown; similar to SNF2 transcriptional regulator
YBR183W	YPC1______	-1.25	183344	146758	sphingolipid metabolism	alkaline ceramidase
YCRX13W	__________	+1.16	302966	351257
YDR054C	CDC34_____	+1.22	298954	366217	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YDR421W	__________	+1.07	196781	210575	unknown	unknown
YER116C	__________	+1.03	168605	172866	unknown	unknown
YGL114W	__________	+1.11	239587	264793	unknown	unknown; major facilitator superfamily
YGR221C	__________	+1.07	149016	158844	unknown	unknown
YIL017C	VID28_____	+1.30	140040	181580	vacuolar protein targeting (putative)	unknown
YJL115W	ASF1______	+1.03	465524	477440	transcription	anti-silencing protein
YKL111C	__________	-1.11	278756	251547	unknown	unknown
YLR045C	STU2______	+1.22	155690	190222	cytoskeleton	spindle pole body component
YLR417W	VPS36_____	+1.17	237913	278241	vacuolar protein targeting	unknown?
YMR152W	YIM1______	+1.01	372644	375581	protein processing	mitochondrial inner membrane protease
YNL206C	RTT106____	-1.05	289378	274327	transposition	unknown; similar to SSRP proteins (DNA structure-specific
YOL110W	SHR5______	+1.13	227056	257042	protein processing	localization and palmitoylation of Ras proteins
YOR322C	__________	-1.07	228998	213681	unknown	unknown
YPR017C	DSS4______	-1.01	314240	310368	secretion	GDP/GTP exchange factor for Sec4p
YBL110C	__________	+1.53	187737	286489
YCL018W	LEU2______	+1.03	267093	275737	leucine biosynthesis	beta-isopropyl-malate dehydrogenase
YDL114W	__________	-1.02	105813	103531	unknown	unknown
YEL017W	__________	-1.02	305413	300847	unknown	unknown
YFR035C	__________	-1.44	434744	301034	unknown	unknown
YHR053C	CUP1-1____	-1.01	3562856	3533740	Cu2+ ion homeostasis	metallothionein
YIR023W	DAL81_____	+1.04	118012	123282	transcription	activator of allantoin and urea catabolic genes
YJR082C	__________	+1.24	224590	279573	unknown	unknown
YKR078W	__________	-1.02	169848	166775	unknown	unknown; similar to Uso1p
YLR233C	EST1______	+1.06	114445	121295	telomere length regulation	putative end-binding protein
YML102W	CAC2______	-1.01	331005	328080	chromatin structure	chromatin assembly factor I subunit
YNL018C	__________	-1.43	153787	107625	unknown	unknown; similar to Drosophila melanogaster
YNR057C	BIO4______	-1.13	229966	203157	biotin biosynthesis	dethiobiotin synthetase
YOR136W	IDH2______	+1.80	558936	1006814	TCA cycle	isocitrate dehydrogenase
YPL112C	__________	-1.16	485094	419804	unknown	unknown
YPR203W	__________	+1.43	190636	272648	unknown	unknown; similar to other subtelomerically-encoded proteins
YAL030W	SNC1______	+1.10	356946	391775	secretion	Golgi v-SNARE
YBR195C	MSI1______	-1.20	224681	186823	chromatin structure	chromatin assembly factor I subunit
YDR066C	__________	+1.11	172932	192090	unknown	unknown; similar to Yer139p
YDR433W	__________	-1.08	108399	100097	unknown	unknown
YER127W	LCP5______	-1.56	652081	418176	rRNA processing, putative	unknown
YGL126W	SCS3______	+1.01	97106	97889	phospholipid metabolism	inositol phospholipid biosynthesis
YGR233C	PHO81_____	-1.17	172775	147462	cell cycle	Pho85p kinase inhibitor
YIL029C	__________	+1.38	130633	179960	unknown	unknown
YJL127C	SPT10_____	+1.00	145327	145926	transcription	transcriptional regulator
YKL123W	__________	+1.23	121532	149657	unknown	unknown
YLR057W	__________	+1.24	181073	224401	unknown	unknown
YLR427W	__________	+1.04	200661	207695	unknown	unknown
YMR162C	__________	-1.15	115088	100221	unknown	unknown; similar to members of the Drs2p family of P-type
YNL218W	__________	-1.06	121885	115103	unknown	unknown; similar to E. coli DNA polymerase III gamma and tau
YOL122C	SMF1______	+1.78	284290	505354	transport	high affinity manganese transporter
YOR334W	MRS2______	+1.11	165407	182942	mRNA splicing, mitochondrial	unknown
YPR029C	APL4______	+1.15	923281	1059380	secretion	AP complex subunit
YBR009C	HHF1______	-1.54	7594745	4943931	chromatin structure	histone H4
YCL030C	HIS4______	-1.09	847346	777270	histidine biosynthesis	histidinol dehydrogenase
YDL126C	CDC48_____	+1.45	806264	1169074	ubiquitin mediated degredation	microsomal AAA ATPase family
YDR249C	__________	+1.11	139861	155685	unknown	unknown; similar to cytochromes
YEL029C	__________	+1.23	214013	264001	unknown	unknown; similar to putative Salmonella phosphotransferase
YFR046C	__________	+1.13	252736	286771	unknown	unknown
YGR047C	TFC4______	+1.11	144292	160420	transcription	TFIIIC 131 kD subunit
YIR034C	LYS1______	-1.11	297593	269063	lysine biosynthesis	saccharopine dehydrogenase
YJR094C	IME1______	+1.04	159484	166350	meiosis	transcription factor
YKR090W	__________	+1.23	154964	191366	unknown	unknown
YLR245C	CDD1______	+1.16	98712	114527	pyrimidine metabolism	cytidine deaminase
YML114C	TAF65_____	+1.18	351764	416627	transcription	TFIID subunit
YNL030W	HHF2______	-1.46	10119596	6925883	chromatin structure	histone H4
YNR069C	__________	-1.28	218400	170678	unknown	unknown
YOR146W	__________	+1.00	537329	537814	unknown	unknown
YPL124W	NIP29_____	-1.08	235157	217324	nuclear protein targeting	spindle pole body associated protein
YAL040C	CLN3______	+1.49	395403	589738	cell cycle	G1/S cyclin
YBR207W	FTH1______	+1.27	267800	339447	unknown	unknown; similar to Ftr1p
YDR078C	__________	-1.08	174144	160902	unknown	unknown
YDR445C	__________	-1.02	264973	258856	unknown	unknown
YGL138C	__________	+1.09	94307	102834	unknown	unknown
YGR245C	SDA1______	-1.39	889411	642145	cytoskeleton (putative)	unknown
YIL041W	__________	+1.66	1491077	2473614	unknown	unknown
YJL139C	YUR1______	+1.20	149363	179540	protein glycosylation	mannosyltransferase
YKL135C	APL2______	+1.31	137554	180471	secretion	AP-1 complex subunit
YLR069C	MEF1______	+1.07	212909	227347	protein synthesis	translation elongation factor G, mitochondrial
YLR439W	MRPL4_____	-1.08	400089	370910	protein synthesis	ribosomal protein, mitochondrial L4
YMR173W	DDR48_____	+2.66	1328330	3533866	unknown	induced by DNA damage, heat shock, or osmotic stress
YNL230C	ELA1______	+1.19	204286	243868	transcription (putative)	elongin A homolog
YOL134C	__________	+1.09	296807	323692	unknown	unknown
YOR344C	TYE7______	+1.57	549630	861603	glycolysis	basic h-l-h transcription factor
YPR041W	TIF5______	-1.15	1913551	1661647	protein synthesis	translation initiation factor eIF5
YBR019C	GAL10_____	-1.09	123000	112859	galactose metabolism	UDP-glucose 4-epimerase
YCL042W	__________	-1.15	120313	105039	unknown	unknown
YDL136W	RPL35B____	-1.45	3146978	2169980	protein synthesis	ribosomal protein L35B
YDR261C	EXG2______	+1.43	416411	593599	cell wall biogenesis	exo-beta-1,3-glucanase
YEL041W	__________	-1.01	134072	132689	unknown	unknown; similar to Fre2p
YGR059W	SPR3______	+1.23	102590	125780	sporulation	septin
YHR074W	__________	+1.32	459092	606449	unknown	unknown; similar to Rhodobacter protein adgA and Bacillus subtilis NH3-dependent NAD synthetase (spore outgrowth factor)
YJR105W	__________	+1.06	2093415	2213385	unknown	unknown; similar to ribokinase
YKR102W	FLO10_____	-1.04	140355	134631	unknown	unknown; similar to flocculation protein Flo1p
YML125C	__________	+1.17	1284667	1507621	unknown	unknown; similar to NADH-cytochrome b5 reductase
YNL040W	__________	-1.63	324373	198591	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOR158W	PET123____	-1.06	456123	431894	protein synthesis	ribosomal protein, mitochondrial small subunit
YPL136W	__________	-1.04	131848	126401	unknown	unknown
YAL053W	__________	+3.11	274214	851618	unknown	unknown
YBR219C	__________	-1.09	326985	301211	unknown	unknown
YDR090C	__________	+1.01	222602	225323	unknown	unknown; similar to Yro2p
YDR457W	TOM1______	+1.07	112804	120666	cell cycle, G2/M	unknown
YER148W	SPT15_____	-1.19	1401580	1180869	transcription	TFIID and TFIIIB subunit
YGL150C	INO80_____	-1.01	148955	148166	unknown	unknown; similar to the Snf2p family of DNA-dependent ATPases
YGR257C	__________	+1.23	351750	431172	unknown	unknown; similar to members of the mitochondrial carrier
YIL053W	RHR2______	-1.53	6800112	4447358	glycerol metabolism	DL-glycerol-3-phosphatase
YJL151C	__________	+1.99	868260	1730120	unknown	unknown
YKL147C	__________	+1.04	130164	135907	unknown	unknown
YLR081W	GAL2______	+1.04	121266	126012	transport	glucose and galactose permease
YLR451W	LEU3______	-1.11	172114	155109	leucine biosynthesis	transcription factor
YMR184W	__________	+2.85	260931	742680	unknown	unknown
YNL242W	SPO72_____	+1.04	120008	124434	sporulation	unknown
YOL146W	__________	+1.06	395444	421126	unknown	unknown
YOR356W	__________	-1.04	123834	119627	unknown	unknown; similar to human electron transfer flavoprotein-ubiquinone oxidoreductase
YPR053C	__________	-1.03	941284	915237	unknown	unknown
YBR031W	RPL4A_____	-1.19	12310330	10348883	protein synthesis	ribosomal protein L4A
YCL054W	SPB1______	-1.27	275134	216560	ribosome biogenesis	rRna methyltransferase (putative)
YDL148C	__________	-1.33	382783	288637	unknown	unknown
YDR269C	__________	-1.02	130637	128393	unknown	unknown
YEL053C	MAK10_____	+1.09	302027	328573	dsRNA virus propagation	unknown
YGR071C	__________	+1.16	144190	167070	unknown	unknown
YHR085W	__________	+1.20	93792	112224	unknown	unknown
YJR117W	STE24_____	+1.27	667725	851159	protein processing	zinc metalloprotease; a-factor precursor processing
YLR265C	__________	+1.54	206299	318083	unknown	unknown
YMR004W	MVP1______	+1.26	291431	368275	vacuolar protein targeting	peripheral Golgi membrane protein
YNL052W	COX5A_____	-1.25	1458578	1165612	oxidative phosphorylation	cytochrome-c oxidase subunit Va
YOR170W	__________	-1.04	369152	354577	unknown	unknown
YPL148C	PPT2______	+1.26	178095	223624	lipid transport	phosphopantetheine
YAL064W	__________	+1.16	91238	106106	unknown	unknown
YBR231C	AOR1______	+1.08	186902	201678	osmotic stress response (putative)	unknown
YDR100W	__________	+1.26	298339	374763	unknown	unknown
YDR469W	__________	+1.10	329181	360642	unknown	unknown; similar to C. elegans dpy-30 gene product,
YER159C	BUR6______	+1.97	624339	1229668	transcription	general pol II repressor
YGL162W	SUT1______	+1.23	143574	176406	transport	hypoxic gene family (sterol uptake)
YGR269W	__________	+1.17	94625	110741	unknown	unknown
YIL065C	MDV2______	+1.34	231223	309563	unknown	unknown
YJL163C	__________	+1.26	133843	168090	unknown	unknown; similar to bovine prefoldin subunit 1
YKL159C	RCN1______	+1.57	182232	286626	signaling	unknown; calcineurin regulator
YLR093C	NYV1______	+1.80	509267	918539	vacuolar protein targeting	vacuolar v-SNARE
YLR463C	__________	+1.72	201195	346483	unknown	unknown; similar to other subtelomerically-coded proteins
YMR195W	ICY1______	-1.11	249810	224807	cytoskeleton (putative)	unknown
YNL254C	__________	+1.08	175626	188815	unknown	unknown
YOL158C	ENB1______	-1.15	317230	276231	transport	enterobactin transporter
YOR368W	RAD17_____	+1.08	298914	323988	cell cycle, checkpoint	3'->5' exonuclease (putative)
YPR065W	ROX1______	-1.03	108618	105116	transcription, oxygen-dependent	transcriptional repressor
YBR043C	__________	-1.01	128640	126926	unknown	major facilitator superfamily
YCL066W	HMLALPHA1_	-4.70	468885	99786	transcription	silenced copy at HML; see YCR040W
YDL160C	DHH1______	-1.02	253292	247973	transcription	RNA helicase
YDR281C	PHM6______	-1.33	136759	103202	phosphate metabolism (putative)	unknown
YEL064C	__________	-1.06	143100	135201	unknown	unknown; similar to members of the major facilitator
YGR083C	GCD2______	+1.04	758986	791395	protein synthesis	translation initiation factor eIF2B subunit
YHR097C	__________	+3.17	286102	906363	unknown	unknown
YJR129C	__________	+1.15	278173	320472	unknown	unknown
YLR277C	YSH1______	+1.11	218630	243150	mRNA 3'-end processing	cleavage/polyadenylation factor CF II component
YMR016C	SOK2______	+1.00	291662	292475	unknown	unknown; similar to several transcription factors
YNL062C	GCD10_____	-1.09	443884	407817	protein synthesis	translation initiation factor eIF3 RNA-binding subunit
YOR182C	RPS30B____	-1.35	5813350	4304369	protein synthesis	ribosomal protein S30B
YPL160W	CDC60_____	-1.05	140798	134542	protein synthesis	tRNA synthetase, leucyl
YAR014C	__________	+1.20	286806	344250	unknown	unknown
YBR243C	ALG7______	+1.18	278798	328202	protein glycosylation	UDP-N-acetyl-glucosamine-1-P transferase (GPT)
YDR112W	__________	+1.05	101719	107291	unknown	unknown
YDR481C	PHO8______	+1.49	218293	324960	phosphate metabolism	vacuolar alkaline phosphatase
YER168C	CCA1______	-1.12	444584	397282	tRNA processing	tRNA nucleotidyltransferase
YGL174W	__________	+1.08	208670	224740	unknown	unknown
YGR281W	YOR1______	+1.50	313333	471207	transport	ATP-binding cassette (ABC) family
YIL074C	SER33_____	+1.48	847553	1258022	serine biosynthesis	3-phosphoglycerate dehydrogenase
YJL175W	__________	-1.14	172321	150823	unknown	unknown
YKL171W	__________	+1.22	126034	153647	unknown	putative protein kinase
YLR105C	SEN2______	+1.29	256702	330301	tRNA splicing	splicing endonuclease subunit
YMR207C	HFA1______	-1.11	316215	283945	unknown	unknown; similar to acetyl-coenzyme A carboxylase
YNL266W	__________	+1.19	272476	325428	unknown	unknown; similar to NADH dehydrogenases
YOR004W	__________	-1.47	1147861	778755	unknown	unknown
YOR380W	__________	+1.08	169091	183356	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YPR077C	__________	+1.19	129082	153015	unknown	unknown
YBR055C	PRP6______	+1.06	231166	244005	mRNA splicing	U4/U6 snRNP protein
YCLX05C	__________	+1.14	227580	259575
YDL172C	__________	+1.94	460237	892225	unknown	unknown
YDR293C	SSD1______	+1.52	187949	284799	drug resistance	putative protein phosphatase
YGR095C	RRP46_____	-1.39	589943	425833	rRNA processing	3'->5' exoribonuclease
YHR109W	CTM1______	-1.02	213669	209288	proteim modification	cytochrome c trimethylase
YJR141W	__________	+1.17	256664	300241	unknown	unknown
YLR288C	MEC3______	+1.26	164308	206692	DNA repair; DNA damage checkpoint	activates exonuclease
YMR028W	TAP42_____	+1.15	427255	490117	signaling	associated with protein phosphatases
YNL074C	MLF3______	+1.51	370600	558846	unknown	unknown
YPL172C	COX10_____	-1.05	184820	175925	respiration	cytochrome-c oxidase assembly
YAR035W	YAT1______	-1.11	111885	100689	fatty acid transport	carnitine O-acetyltransferase
YBR255W	__________	+1.02	157163	160537	unknown	unknown
YDR124W	__________	+1.02	165060	169048	unknown	unknown
YDR493W	__________	-1.11	179467	162297	unknown	unknown
YER179W	DMC1______	+1.11	144862	160822	meiosis, chromsome pairing	unknown
YGL186C	__________	-1.24	311770	250762	unknown	unknown; similar to Fcy21p, Fcy2p, Fcy22p
YGR293C	__________	+1.17	174062	203090	unknown	unknown
YIL085C	KTR7______	+1.07	581917	622910	protein glycosylation	putative mannosyltransferase
YJL187C	SWE1______	+1.35	225587	303641	cell cycle	negative regulator of Cdc28p
YKL183W	__________	+1.13	161130	181452	unknown	unknown
YLR117C	CLF1______	+1.19	167624	198924	mRNA splicing; cell cycle (putative)	unknown; synthetic lethal with cdc40

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YMR219W	ESC1______	+1.06	444617	469857	silencing	unknown
YNL278W	__________	+1.11	251619	278712	unknown	unknown
YOR016C	ERP4______	+1.01	118420	119064	membrane trafficking; secretion (putative)	unknown
YOR392W	__________	-1.16	117570	101739	unknown	unknown
YPR089W	__________	-1.20	145888	121559	unknown	unknown
YBR067C	TIP1______	-1.32	892051	675071	stress response (putative)	cell wall mannoprotein
YCR005C	CIT2______	+1.06	192354	202987	glyoxylate cycle	peroxisomal citrate synthase
YDL184C	RPL41A____	-2.03	11516947	5677379	protein synthesis	ribosomal protein L41A
YDR305C	HNT2______	-1.08	299505	278599	unknown	histidine triad family
YER008C	SEC3______	-1.13	1215829	1074001	secretion	exocyst complex subunit
YGR107W	__________	+1.23	282218	347006	unknown	unknown
YHR121W	__________	-1.11	901695	815960	unknown	unknown
YJR153W	PGU1______	-1.14	204916	179188	unknown	endo-polygalacturonase
YLR300W	EXG1______	+2.70	2378933	6417744	cell wall biogenesis	exo-beta-1,3-glucanase
YMR039C	SUB1______	+1.13	489331	554966	transcription	transcriptional coactivator
YNL086W	__________	+1.12	180630	203098	unknown	unknown
YOR204W	DED1______	-1.12	806803	722157	RNA processing	ATP-dependent RNA helicase
YBL005W	TY1B______	-1.05	97642	93092	unknown	unknown
YBR267W	__________	-1.44	373829	259340	unknown	unknown
YDL006W	PTC1______	-1.40	342492	244967	tRNA splicing	protein phosphatase
YDR136C	__________	-1.06	94863	89825	unknown	unknown
YDR505C	PSP1______	+1.08	108617	116852	unknown	unknown; overexpression suppresses mutation in pol3
YFL004W	PHM1______	-1.34	419126	311819	phosphate metabolism (putative)	polyphosphate synthetase (putative)
YGL198W	__________	+1.15	286123	329831	unknown	unknown; similar to NADH-ubiquinone oxidoreductase chain 2
YHL005C	__________	-1.07	112627	105432	unknown	unknown
YIL097W	__________	+1.12	153400	171626	unknown	unknown
YJL199C	__________	+1.21	122118	147936	unknown	unknown
YKL195W	__________	+1.02	88338	89822	unknown	unknown
YLR129W	DIP2______	-1.14	368916	323995	unknown	interacts with Dom3p
YML006C	GIS4______	+1.09	290701	315685	unknown	unknown
YMR231W	PEP5______	+1.02	218140	222819	vacuole biogenesis	unknown; vacuolar peripheral membrane protein
YNL288W	__________	+1.02	389817	396606	unknown	unknown
YOR028C	CIN5______	-1.40	198518	142214	salt tolerance	basic leu zipper transcription factor
YPL006W	NCR1______	-1.02	110452	108159	sterol metabolism (putative)	unknown
YPR101W	SNT309____	+1.11	390460	431870	mRNA splicing	spliceosome-associated protein
YBR079C	RPG1______	-1.32	1007430	765640	protein synthesis	translation initiation factor eIF3
YCR017C	__________	-1.09	108552	99463	unknown	unknown
YDL196W	__________	-1.26	121990	96896	unknown	unknown
YER019W	__________	-1.65	1234920	750328	unknown	unknown; similar to mammalian neutral
YGL006W	PMC1______	+1.42	324575	461318	transport	vacuolar Ca(2+)-ATPase
YGR117C	__________	+1.15	292139	335563	unknown	unknown
YHR132C	ECM14_____	-1.01	506296	503692	cell wall biogenesis	unknown
YJL006C	CTK2______	+1.03	200565	206677	transcription	cyclin-like
YKL006C	SFT1______	-1.00	316726	315969	secretion	intra-Golgi v-SNARE
YLL006W	MMM1______	-1.04	190680	183120	mitochondrial biogenesis	(putative) component of actin binding protein complex
YLR312C	__________	-1.04	93687	90084	unknown	unknown
YNL098C	RAS2______	+1.14	715148	817319	signaling, Ras pathway	GTP-binding protein, ras homolog
YOL006C	TOP1______	+1.12	192569	216625	DNA replication	topoisomerase I
YOR216C	RUD3______	+1.07	404038	433040	secretion (putative)	unknown; suppresses uso1-1
YPL195W	APL5______	-1.00	158640	158370	vacuolar protein targeting	AP-3 complex subunit
YAR062W	__________	-1.11	164045	147522	unknown	unknown; similar to the N-terminus of Flo1p, identical to Yhr213p
YBL016W	FUS3______	-1.00	297140	295903	mating (cell cycle arrest)	protein kinase
YBR279W	PAF1______	+1.01	364009	368594	transcription	RNA polymerase II-associated protein
YDL018C	ERP3______	-1.04	227997	218881	membrane trafficking; secretion (putative)	unknown
YDR148C	KGD2______	+1.16	352592	408154	TCA cycle	2-oxoglutarate dehydrogenase
YDR517W	GRH1______	+1.17	323802	379650	unknown	unknown; homolog of mammalian Golgi protein GRASP65
YGL210W	YPT32_____	-1.19	635536	535267	secretion	ras-like GTPase
YHL014C	YLF2______	+1.01	270304	272512	unknown	unknown; similar to B. subtilis GTP-binding protein and human glycogen phosphorylases
YIL108W	__________	+2.23	240555	536056	unknown	unknown
YJL211C	__________	+1.13	131591	149162	unknown	unknown
YKL207W	__________	+1.27	617364	782007	unknown	unknown
YLR141W	RRN5______	+1.00	160808	160957	transcription	component of upstream activation factor complex (UAF)
YML015C	TAF40_____	+1.01	277141	280731	transcription	TFIID 40 kD subunit
YMR243C	ZRC1______	-1.45	1518219	1049387	zinc and cadmium ion homeostasis	unknown
YNL300W	__________	+2.09	361053	755941	unknown	unknown; similar to Mid2p
YOR040W	GLO4______	+1.08	223495	240609	methylglyoxal resistance	glyoxalase II
YPL018W	CTF19_____	-1.16	158680	137080	mitosis, chromosome segregation	kinetochore protein
YPR113W	PIS1______	+1.10	1340204	1471217	phospholipid metabolism	phosphatidylinositol synthase
YBR090C	NHP6B_____	+1.02	586649	599764
YCR027C	RSG1______	-1.01	152561	150543	unknown	GTP-binding protein, ras family
YDL208W	NHP2______	-1.53	1950746	1273361	unknown	unknown; similar to high mobility group proteins
YDR327W	__________	-1.09	668811	611865	unknown	unknown
YER030W	__________	-1.12	551727	493316	unknown	unknown
YGL018C	JAC1______	-1.09	223411	204197	protein folding	chaperonin; E. coli Hsc20 homolog
YGR129W	SYF2______	-1.12	201449	179618	cell cycle (putative)	unknown; synthetic lethal with cdc40
YHR143W	RPC10_____	+1.20	684204	822573	transcription	shared subunit of RNA polymerase I,II, and III
YJL018W	__________	-1.03	136800	132946	unknown	unknown
YKL017C	HCS1______	+1.21	174981	211351	DNA replication	DNA helicase A
YLL018C	DPS1______	+1.15	2004550	2305105	protein synthesis	tRNA synthetase, aspartyl
YLR323C	__________	+1.00	154266	154702	unknown	unknown
YNL110C	__________	-1.90	947117	499154	unknown	unknown
YOL018C	TLG2______	+1.31	261584	342648	endocytosis	trans-Golgi network t-SNARE
YOR228C	__________	-1.11	143784	129712	unknown	unknown
YPL207W	__________	-1.11	449896	406586	unknown	unknown
YBL028C	__________	-1.83	662343	360994	unknown	unknown
YBR291C	CTP1______	-1.57	330866	211008	transport	mitochondrial citrate transporter
YDL030W	PRP9______	-1.09	237396	217506	mRNA splicing	U2 snRNP activation
YDR160W	SSY1______	+1.10	156955	171891	transport	regulator of transporters
YDR529C	QCR7______	-1.14	910195	798197	respiration	cytochrome-c reductase subunit
YFL023W	__________	-1.05	155546	147726	unknown	unknown
YGL222C	EDC1______	-1.01	113439	112116	mRNA processing	unknown; genetic interactiosn with dcp1-2
YHL026C	__________	-1.12	250231	222860	unknown	unknown
YIL120W	QDR1______	+1.02	148304	151170	drug resistance (putative)	unknown; major facilitator superfamily
YJL223C	PAU1______	+1.48	253328	375448	unknown	unknown; similar to members of the Srp1p/Tip1p family
YKL219W	COS9______	+1.68	204547	343439	unknown	unknown; similar to subtelomerically-encoded proteins
YLR153C	ACS2______	-1.29	1024417	796256	acetyl-CoA biosynthesis	acetyl-coenzyme A synthetase
YML027W	YOX1______	+1.53	185721	284311	unknown	binds leu-tRNA gene
YMR255W	GFD1______	+1.06	218405	230896	RNA processing (putative)	unknown; affects DEAD box protein activity
YNL312W	RFA2______	-1.16	458094	394059	DNA replication	replication factor A 36 kD subunit
YOR052C	__________	+1.68	184458	309274	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YPL030W	__________	-1.05	381878	362279	unknown	unknown
YPR125W	__________	+1.11	1034860	1151627	unknown	suppresses mrs2-1
YBR101C	__________	-1.05	957265	910973	unknown	unknown; similar to Ypt/Rab interacting protein
YCR038C	BUD5______	-1.02	152517	149374	bud site selection	GDP/GTP exchange factor for Rsr1p/Bud1p
YDL220C	CDC13_____	-1.08	113227	104515	cell cycle, G2/M	telomere binding protein
YDR339C	__________	-1.20	589735	492078	unknown	unknown
YER041W	__________	+1.09	140422	152574	unknown	unknown; similar to DNA repair protein Rad2p
YGL030W	RPL30_____	-1.33	3118889	2344197	protein synthesis	ribosomal protein L30
YGR141W	__________	+1.38	165898	229750	unknown	unknown
YHR154W	ESC4______	-1.02	152284	149067	silencing	unknown
YJL030W	MAD2______	+1.35	228904	308954	mitosis	unknown; spindle-assembly checkpoint
YKL029C	MAE1______	-1.20	255028	213059	pyruvate metabolism	mitochondrial malic enzyme
YLL030C	__________	+1.01	92089	93110	unknown	unknown; similar to Ca++-transporting ATPase
YLR335W	NUP2______	+1.06	440257	468777	nuclear protein targeting	nuclear pore protein
YMR072W	ABF2______	+2.61	742198	1938641	mitochondrial genome maintenance	(putative) HMG transcription factors
YNL122C	__________	-1.11	291337	261580	unknown	unknown
YOL030W	__________	+1.83	983557	1799886	unknown	unknown; similar to Gas1p
YOR240W	__________	+1.14	612382	699005
YPL219W	PCL8______	+1.08	199517	214553	cell cycle	cyclin (Pho85p)
YER190W	YRF1-2____	-1.10	119099	108096	unknown	Y' helicase (subtelomerically-encoded)
YBL040C	ERD2______	+1.45	288692	418846	ER protein retention	HDEL receptor
YDL042C	SIR2______	-1.04	102289	98598	silencing	reulator of silencing at HML, HMR, telomeres
YDR541C	__________	+1.06	173061	183672	unknown	unknown; similar to dihydroflavonol-4-reductases
YGL233W	SEC15_____	+1.29	212461	273236	secretion	exocyst complex subunit
YHL037C	__________	-1.11	111684	100344	unknown	unknown
YIL132C	__________	-1.06	126786	119156	unknown	unknown
YJR010C	SPC1______	+1.03	258974	267878	secretion	signal peptidase subunit
YKR006C	MRPL13____	-1.25	491216	393645	protein synthesis	ribosomal protein, mitochondrial L13
YLR163C	MAS1______	+1.04	319191	333269	protein processing	mitochondrial processing protease subunit
YML037C	__________	-1.06	128572	121091	unknown	unknown
YMR267W	PPA2______	-1.08	153663	142556	oxidative phosphorylation	inorganic pyrophosphatase, mitochondrial
YNL324W	__________	-1.18	114749	97643	unknown	unknown
YOR064C	YNG1______	-1.05	380108	362902	chromatin structure	histone acetyltransferase complex subunit
YPL042C	SSN3______	+1.01	161058	163238	transcription	RNA polymerase II mediator subunit
YPR137W	RRP9______	-1.07	557004	521335	rRNA processing	U3 snRNP protein
YBR112C	CYC8______	-1.09	143229	131441	transcription	general repressor
YCR050C	__________	+1.03	173488	178128	mitochondrial function (putative)	unknown
YDL232W	OST4______	+1.11	140548	155594	protein glycosylation	oligosaccharyltransferase complex assembly
YDR351W	SBE2______	+1.35	229983	311055	bud growth	unknown
YER051W	__________	+1.08	162415	174700	unknown	unknown
YGL042C	__________	-1.10	535228	486591	unknown	unknown; similar to rat Na+/Ca++ exchanger NCX2 PIR:A54139
YGR153W	__________	+1.54	146586	225166	unknown	unknown
YHR166C	CDC23_____	+1.08	218101	234607	mitosis	anaphase promoting complex subunit
YJL043W	__________	-1.16	128360	110864	unknown	unknown
YKL040C	NFU1______	+1.15	525877	604768	iron homeostasis	unknown; similar to Anabaena nitrogen fixing protein nifU
YLL042C	APG10_____	+1.01	130715	131518	autophagy	unknown; protein conjugating enzyme (putative)
YLR347C	KAP95_____	+1.06	237884	251360	nuclear protein targeting	beta-karyopherin
YMR083W	ADH3______	+1.21	5816183	7013053	glycolysis	alcohol dehydrogenase III, mitochondrial
YNL134C	__________	+3.54	609224	2157547	unknown	unknown; similar to C. carbonum toxD gene
YOL042W	__________	+1.24	271486	335863	unknown	unknown; similar to Ccr4p
YOR252W	__________	-1.25	711229	568859	unknown	unknown
YPL231W	FAS2______	-1.10	173279	158020	fatty acid metabolism	fatty-acyl-CoA synthase, alpha subunit
YBL052C	SAS3______	-1.16	180985	156656	silencing	unknown
YDL054C	__________	+1.10	171359	187658	unknown	unknown
YDR181C	SAS4______	+1.05	212705	222919	silencing	unknown
YFL045C	SEC53_____	+1.12	3170987	3565201	protein glycosylation	phosphomannomutase
YGL245W	__________	+1.11	2349721	2615857	protein synthesis	tRNA synthetase, glutamyl
YHL048W	COS8______	+2.45	537607	1317287	unknown	unknown; similar to subtelomerically-encoded proteins
YIL144W	TID3______	+1.22	243102	295973	cytoskeleton	spindle pole body component
YJR022W	LSM8______	+1.23	167958	207373	mRNA splicing	snRNP protein (putative)
YKR018C	__________	+1.17	281180	329699	unknown	unknown
YLR175W	CBF5______	-1.13	2903532	2572141	mitosis	centromeric microtubule binding protein
YML047C	__________	-1.08	124158	115402	unknown	unknown
YMR279C	__________	+1.14	176726	201636	unknown	major facilitator superfamily
YNL336W	COS1______	+1.20	123213	147664	unknown	unknown; similar to subtelomerically-encoded proteins
YOR076C	__________	+1.04	273215	284407	unknown	unknown
YPL054W	LEE1______	+1.17	142122	166754	unknown	unknown
YPR147C	__________	+1.02	133408	135515	unknown	unknown
YBR124W	__________	+1.03	96877	99428	unknown	unknown
YCR062W	__________	-1.09	179230	164264	unknown	unknown
YDL244W	THI13_____	+1.73	135103	234178	unknown	unknown; similar to Thi5p, Thi11p, and Thi12p
YDR363W	ESC2______	+1.10	149903	164757	silencing	unknown
YER061C	CEM1______	+1.04	179682	186525	fatty acid metabolism	beta-keto-acyl-ACP synthase, mitochondrial
YGL054C	ERV14_____	+1.02	981805	997786	polarized growth (putative)	unknown; ER-derived vesicle protein
YHR178W	STB5______	+1.06	139749	147619	transcription	unknown; binds Sin3p
YJL055W	__________	+1.50	626988	939131	unknown	unknown
YKL052C	__________	+1.17	387201	452524	unknown	unknown
YLL054C	__________	+1.18	92695	109723	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YLR359W	ADE13_____	-1.30	3104167	2381972	purine biosynthesis	adenylosuccinate lyase
YMR094W	CTF13_____	+1.03	154509	159219	mitosis	kinetochore protein complex subunit
YNL146W	__________	-1.09	131377	120417	unknown	unknown
YOL053C	__________	+1.55	126852	196583
YOR264W	__________	+1.22	393562	479565	unknown	unknown
YPL243W	SRP68_____	+1.09	994210	1079891	secretion	signal recognition particle subunit
YBL064C	__________	+1.62	240026	389622	unknown	unknown; similar to Tsa1p
YDL066W	IDP1______	+1.44	178184	255845	TCA cycle	isocitrate dehydrogenase (NADP+)
YDR193W	__________	+1.01	106055	107157	unknown	unknown
YFL057C	__________	+1.00	101947	101954	unknown	putative aryl-alcohol reductase
YGL257C	MNT2______	+1.36	286531	389048	protein glycosylation	mannosyltransferase
YHR008C	SOD2______	+1.16	95358	111059	oxidative stress response	Manganese superoxide dismutase
YIL156W	UBP7______	+1.19	201326	239090	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YJR033C	RAV1______	+1.08	440123	477034	vacuolar acidification (putative)	unknown; regulates V-ATPase
YKR030W	__________	-1.03	480688	466955	unknown	unknown
YLR187W	__________	+1.14	129307	147224	unknown	unknown
YML057W	CMP2______	+1.49	347295	517510	signaling	calcineurin catalytic A subunit
YNR009W	__________	+1.09	299863	328260	unknown	unknown
YOR088W	__________	+1.32	423385	556827	unknown	unknown
YPL064C	__________	+1.05	404384	422982	unknown	unknown
YBR136W	MEC1______	+1.02	90842	92553	DNA repair and recombination	PI kinase homolog
YCR073C	SSK22_____	+1.22	145195	177366	signaling, high osmolarity pathway	MAPKKK (mitogen-activated protein kinase kinase kinase)

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YDR008C	__________	+1.12	416092	467208	unknown	unknown
YDR373W	FRQ1______	-1.08	554932	511977	unknown	unknown; similar to human BDR-1 protein and other calcium
YER070W	RNR1______	+1.26	505254	637699	DNA replication	ribonucleotide reductase
YGL066W	__________	-1.03	110770	107596	unknown	unknown; similar to Dictyostelium discoideum G-box-binding
YGR173W	__________	+1.01	1038113	1047977	unknown	unknown; similar to human GTP-binding protein PIR:A55014
YHR190W	ERG9______	+1.05	1430969	1499324	sterol metabloism	squalene synthetase
YJL067W	__________	+1.41	233394	330006	unknown	unknown
YKL064W	MNR2______	+1.22	168737	205239	manganese resistance	unknown
YLL066C	__________	+1.17	102707	120159	unknown	unknown; similar to other subtelomerically-encoded proteins
YLR371W	ROM2______	+1.20	627631	754319	signaling	GDP/GTP exchange factor for Rho1p
YMR106C	YKU80_____	+1.27	150185	191374	DNA repair	DNA binding; Ku80 homolog
YNL158W	__________	+1.33	251299	333939	unknown	unknown
YOL064C	MET22_____	+1.01	502168	508318	methionine biosynthesis	3'(2')5'-bisphosphate nucleotidase
YOR276W	CAF20_____	-1.05	2396504	2273460	protein synthesis	mRNA cap-binding protein (eIF4F) 20K subunit
YPL254W	HFI1______	-1.10	288318	261194	transcription	Ada/Gcn5 protein complex
YMR321C	__________	-1.16	1319875	1138587	unknown	unknown
YBL076C	ILS1______	-1.10	475737	432776	protein synthesis	tRNA synthetase, isoleucyl
YDL078C	MDH3______	+1.36	575632	784819	TCA cycle	malate dehydrogenase
YDR205W	__________	+1.06	180688	191167	unknown	unknown; similar to Cot1p
YFR001W	LOC1______	-1.26	846614	674240	mRNA localization	dsRNA binding protein
YGR006W	PRP18_____	-1.12	182877	163653	mRNA splicing	U5 snRNP protein
YHR020W	__________	+1.07	1638200	1756704	unknown	unknown; similar to prolyl-tRNA synthetases, putative class
YIL167W	__________	+1.16	249860	289082	gluconeogenesis	serine dehydratase
YJR045C	SSC1______	+1.20	2422722	2905389	mitochondrial protein targeting	HSP70 family, chaperonin and import motor
YKR042W	UTH1______	+1.27	5294042	6744884	aging	unknown
YLR199C	__________	+1.18	386757	454583	unknown	unknown
YML069W	POB3______	-1.02	612918	598777	DNA replication (putative)	binds DNA polymerase delta
YMR301C	ATM1______	+1.09	388485	422954	transport	regulator of mit. iron transporter
YNR021W	__________	-1.24	1737234	1403158	unknown	unknown
YOR100C	CRC1______	-1.06	138882	131339	transport	mitochondrial carnitine carrier
YPL076W	GPI2______	+1.02	204598	208322	protein processing	N-acetylglucosaminylphosphatidylinositol synthesis
YPR167C	MET16_____	+1.64	181579	297328	sulfate assimilation	3'-phosphoadenylylsulfate reductase
YBR148W	YSW1______	-1.17	161605	138687	unknown	spore specific
YCR086W	__________	+1.12	243067	273112	unknown	unknown
YDR020C	__________	-1.02	145313	142486	unknown	unknown; similar to uridine kinases and phosphoribulokinases
YDR385W	EFT2______	+1.07	5311326	5665320	protein synthesis	translation elongation factor eEF2
YER082C	__________	-1.06	655629	619360	unknown	unknown
YGL078C	DBP3______	-1.23	1160291	943132	rRNA processing	RNA helicase
YGR185C	TYS1______	+1.01	2308584	2330091	protein synthesis	tRNA synthetase, tyrosyl
YHR202W	__________	-1.02	238554	234024	unknown	unknown
YJL079C	PRY1______	+1.01	851683	860014	unknown	unknown; similar to plant PR-pathogen related proteins
YKL076C	__________	-1.02	287863	282036	unknown	unknown
YLR011W	__________	+1.34	243662	326008	unknown	unknown; similar to E. coli 20.4 KD protein of unknown function
YLR383W	RHC18_____	+1.04	116350	120683	DNA repair, recombination	unknown
YMR118C	__________	+1.39	175472	244539	unknown	unknown; similar to Sdh3p
YNL170W	__________	-1.21	525937	435730	unknown	unknown
YOL076W	MDM20_____	-1.06	288026	270944	mitochondrial inheritance; actin assembly	transmembrane protein
YOR288C	MPD1______	+1.70	258184	437903	protein folding (putative)	related to protein disulfide isomerases
YPL264C	__________	-1.11	181110	162862	unknown	major facilitator superfamily
YBL088C	TEL1______	-1.09	104182	95154	telomere length regulation	putative phosphatidylinositol kinase
YDL090C	RAM1______	-1.31	232680	178040	protein processing	farnesyltransferase
YDR213W	UPC2______	-1.00	142711	142002	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YFR013W	IOC3______	-1.08	326503	303705	unknown	unknown
YGR018C	__________	-1.02	423768	415056	unknown	unknown
YHR031C	RRM3______	-1.02	225231	221330	transposition; rDNA replication	DNA helicase
YIR001C	SGN1______	+1.26	351504	444259	unknown; growth on ethanol and glycerol	unknown
YJR057W	CDC8______	+1.18	302876	358334	DNA replication	thymidylate kinase
YKR054C	DYN1______	+1.04	96558	100220	cytoskeleton	dynein heavy chain
YLR211C	__________	+1.17	126356	148417	unknown	unknown
YML081W	__________	+1.04	681778	709993	unknown	unknown
YMR311C	GLC8______	+1.29	641724	827941	mitosis, chromosome segregation	unknown; regulates Glc7p
YNR033W	ABZ1______	-1.02	399630	393454	PABA biosynthesis	para-aminobenzoate synthase
YOR112W	__________	+1.12	223596	250530	unknown	unknown
YPL088W	__________	+5.16	232633	1200711	unknown	unknown; similar to Agrobacterium tumefaciens MocA protein
YPR179C	PLO1______	+1.13	168429	191074	unknown; ploidy-related	unknown; similar to C-terminal region of Nip80p
YBR160W	CDC28_____	+2.19	456369	1000096	cell cycle	cyclin dependent protein kinase
YCR097W	HMRA1_____	+1.84	134533	247790
YDR032C	PST2______	+1.31	986902	1290220	unknown	unknown; similar to Ycp4p and S. pombe OBR1 brefeldin A; secreted by regenerating protoplasts
YDR397C	NCB2______	+1.05	657589	693443	transcription	negative regulator of RNA polymerase II
YER093C	__________	-1.03	1378372	1343633	unknown	unknown
YGL090W	LIF1______	-1.80	376521	209669	DNA replication (putative)	interacts with DNA ligase
YGR197C	SNG1______	+1.31	213579	279325	nitrosoguanidine resistance	unknown
YHR214W	__________	-1.08	302123	278998	unknown	unknown
YJL091C	__________	+1.25	278406	348029	unknown	unknown; similar to Can1p
YKL088W	__________	+1.03	245547	253218	unknown	unknown; similar to Sis2p
YLR023C	__________	+1.08	213100	229139	unknown	unknown
YLR395C	COX8______	+1.09	621829	675456	oxidative phosphorylation	cytochrome-c oxidase chain VIII
YMR129W	POM152____	-1.17	702949	599081	nuclear protein targeting	nuclear pore protein
YNL182C	__________	-1.40	634983	453116	unknown	unknown
YOL088C	MPD2______	+1.01	710366	718124	unknown	putative protein disulfide isomerase
YOR299W	BUD7______	+1.43	365148	523330	bud site selection, bipolar	unknown
YPL276W	__________	+1.00	147895	148056	unknown	unknown; similar to formate dehydrogenases
YAL008W	FUN14_____	-1.04	169495	163227	unknown	unknown
YBR172C	SMY2______	-1.31	422726	322933	unknown	kinesin related
YCRX02C	__________	+1.03	90114	92746
YDR043C	NRG1______	-1.21	159847	132629	unknown	unknown; suppresses snf mutation(s)
YDR410C	STE14_____	-1.32	284063	214978	mating	a-factor farnesyltransferase
YER105C	NUP157____	-1.34	769881	573190	nuclear protein targeting	nuclear pore protein
YGL103W	RPL28_____	-1.15	14313837	12409819	protein synthesis	ribosomal protein L28
YGR210C	__________	-1.19	880663	740611	unknown	unknown
YIL007C	__________	-1.09	772397	707077	unknown	unknown
YJL104W	__________	-1.55	559461	362064	unknown	unknown
YKL100C	__________	+1.09	272972	297947	unknown	unknown
YLR408C	__________	+1.18	167636	197957	unknown	unknown
YMR141C	__________	+1.35	200333	270697	unknown	unknown
YNL195C	__________	-1.26	148418	117698	unknown	unknown
YOL101C	__________	+1.01	345519	349349	unknown	unknown
YOR311C	__________	+1.22	573320	701129	unknown	unknown
YPR006C	ICL2______	+1.27	190005	240422	unknown	isocitrate lyase, nonfunctional
YBL101C	ECM21_____	+1.10	101981	111713	cell wall biogenesis	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YCL006C	__________	-1.52	216932	143054
YDL103C	QRI1______	-1.10	455738	414873	UDP-N-acetylglucosamine biosynthesis	UDP-N-acetylglucosamine pyrophosphorylase
YDR226W	ADK1______	+1.04	3132113	3249822	metabolism	cytosolic adenylate kinase
YEL007W	__________	+1.01	140290	141040	unknown	unknown; similar to Yhr177p
YFR026C	__________	+1.05	142224	149810	unknown	unknown
YGR029W	ERV1______	+1.08	297899	320248	mitochondrial biogenesis	unknown; similar to human ALR protein
YHR043C	DOG2______	+2.36	378629	894430	2-deoxyglucose resistance	2-deoxyglucose-6-phosphate phosphatase
YIR014W	__________	-1.00	130872	130625	unknown	unknown
YJR070C	__________	-1.14	1863643	1632880	unknown	unknown
YKR067W	__________	-1.04	167939	161719	unknown	unknown; similar to Sct1p
YLR224W	__________	+1.06	316275	336261	unknown	unknown
YNL007C	SIS1______	+1.41	1099273	1545751	translation	heat shock protein, homolog of E. coli DnaJ
YNR046W	__________	-1.36	1430051	1050130	unknown	unknown
YOR125C	CAT5______	-1.02	377061	368991	ubiquinone biosynthesis	unknown
YPL101W	__________	+1.13	457948	518619	unknown	unknown
YPR192W	AQY1______	-1.42	226930	159527	transport, water	aquaporin
YAL020C	ATS1______	+1.05	145574	152226	cytoskeleton (putative)	unknown; similar to human RCC1
YBR184W	__________	-1.54	340724	221560	unknown	unknown
YCRX14W	__________	+1.03	243310	249799
YDR055W	PST1______	+5.59	332322	1856972	unknown	unknown; secreted by regenerating protoplasts
YDR422C	SIP1______	-1.29	278509	216064	transcription	negative regulator of GAL genes
YER117W	RPL23B____	-1.35	10428376	7700385	protein synthesis	ribosomal protein L23B
YGL115W	SNF4______	-1.25	722280	579658	glucose derepression	component of Snf1 complex
YGR222W	PET54_____	+1.26	239754	303287	protein synthesis	translation activator of COX3
YIL018W	RPL2B_____	+1.10	15698524	17228917	protein synthesis	ribosomal protein L2B
YJL116C	NCA3______	-1.10	314140	285782	ATP synthesis	regulates expression of F0F1 ATPase subunits
YKL112W	ABF1______	-1.02	285540	280439	transcription	ARS-binding factor
YLR046C	__________	-1.05	279241	266119	unknown	unknown
YLR418C	CDC73_____	+1.06	430707	457609	transcription	RNA polymerase II accessory protein
YMR153W	NUP53_____	+1.27	418102	529022	nuclear protein targeting	nuclear pore protein
YNL207W	__________	-1.12	196905	175770	unknown	unknown
YOL111C	__________	-1.04	825833	795299	unknown	unknown; similar to human ubiquitin-like protein GDX
YOR323C	PRO2______	+1.03	1800455	1862118	proline biosynthesis	gamma-glutamyl phosphate reductase
YPR018W	RLF2______	-1.14	162268	142375	chromatin structure	chromatin assembly factor I subunit
YBL111C	__________	-1.08	339105	312730	unknown	unknown
YCL019W	__________	-1.05	14105985	13435974	unknown	unknown
YDL115C	__________	+1.01	300359	304817	unknown	unknown
YEL018W	__________	-1.09	349090	321691	unknown	unknown
YFR036W	CDC26_____	-1.28	328033	256118	cell cycle	anaphase-promoting complex subunit
YHR054C	__________	-1.47	1006796	683543	unknown	unknown
YJR083C	__________	+1.06	231970	246705	unknown	unknown
YKR079C	__________	-1.26	1111837	881351	unknown	unknown
YLR234W	TOP3______	-1.17	115438	98455	DNA replication	DNA topoisomerase III
YML103C	NUP188____	+1.01	575425	580987	nuclear protein targeting	nuclear pore protein
YNL019C	__________	-1.09	153522	140547	unknown	unknown
YNR058W	BIO3______	+1.08	165031	178300	biotin biosynthesis	DAPA aminotransferase
YOR137C	__________	+1.20	187249	225523	unknown	unknown
YPL113C	__________	-1.14	171277	149719	unknown	unknown; similar to E. coli 2-hydroxyacid dehydrogenase
YPR204W	__________	+1.92	1764909	3393739	unknown	unknown; similar to other subtelomerically-encoded proteins
YAL031C	FUN21_____	-1.03	169010	164802	unknown	unknown
YBR196C	PGI1______	+1.19	2725787	3237932	glycolysis	glucose-6-phosphate isomerase
YDR067C	__________	+1.03	277924	285489	unknown	unknown
YDR434W	__________	+1.39	266225	370120	unknown	unknown
YER128W	__________	+1.03	163294	167593	unknown	unknown
YGL127C	SOH1______	+1.44	306482	442666	unknown	unknown; similar to RNA polymerases
YGR234W	YHB1______	-12.11	9660964	797739	oxidative stress response (putative)	flavohemoglobin
YIL030C	SSM4______	-1.20	970018	807198	mRNA decay	unknown
YJL128C	PBS2______	-1.07	383639	358940	signaling	two-component pathway
YKL124W	SSH4______	-1.01	402455	396925	unknown	suppresses shr3 mutation
YLR058C	SHM2______	+1.11	946731	1046139	one-carbon interconversion	serine hydroxymethyltransferase
YLR428C	__________	-1.15	147426	128170	unknown	unknown
YMR163C	__________	+1.03	174832	179711	unknown	unknown
YNL219C	ALG9______	+1.07	336871	361790	protein glycosylation	mannosyltransferase
YOL123W	HRP1______	-1.17	1017953	872291	mRNA processing	poly(A)+ RNA-binding protein, putative
YOR335C	ALA1______	-1.15	492778	429196	protein synthesis	tRNA synthetase, alanyl
YPR030W	CSR2______	-1.13	133528	117906	unknown	unknown; multicopy suppressor of chs5 spa2 double mutant
YBR010W	HHT1______	-1.22	7566888	6179072	chromatin structure	histone H3
YCL031C	RRP7______	-1.02	1066633	1044120	rRNA processing	unknown
YDL127W	PCL2______	+1.24	234514	290649	cell cycle	G1/S cyclin
YDR250C	__________	-1.06	145305	136475	unknown	unknown
YEL030W	ECM10_____	-1.24	205143	165721	cell wall biogenesis	heat shock protein (HSP70)
YFR047C	__________	+1.38	622469	861281	unknown	unknown; similar to Rhodospirillum rubrum and S. typhimurium nicotinate-nucleotide pyrophosphorylase
YGR048W	UFD1______	+1.50	201705	302858	protein degradation, ubiquitin-mediated	unknown; ubiquitin fusion degradation
YHR064C	PDR13_____	+1.07	1584474	1700219	drug resistance	HSP70 homolog
YIR035C	__________	+1.36	351384	478325	unknown	unknown; similar to proteins of the human corticosteroid
YKR091W	SRL3______	+4.55	165153	752102	unknown	unknown; suppressor of Rad53 lethality
YLR246W	ERF2______	+1.12	177801	198406	signaling (putative)	unknown; synthetic lethal with Ras CaaX mutant
YML115C	VAN1______	+1.29	436834	564278	protein glycosylation and vanadate resistance	mannosyltransferase
YNL031C	HHT2______	-1.19	7961497	6697256	chromatin structure	histone H3
YNR070W	__________	-1.18	267526	226587	unknown	unknown; ATP-binding cassette (ABC) family
YOR147W	__________	+1.11	206738	229206	unknown	unknown
YPL125W	KAP120____	-1.09	122362	112205	nuclear protein targeting	karyopherin
YAL041W	CDC24_____	+1.16	444724	516691	cell polarity	GDP/GTP exchange factor for Cdc42p
YBR208C	DUR1,2____	+1.25	417365	522872	nitrogen, amino acid, nucleotide metabolism	urea amidolyase
YDR079W	PET100____	-1.05	409734	391833	respiration	cytochrome-c oxidase assembly
YDR446W	ECM11_____	-1.26	306226	243750	cell wall biogenesis	unknown
YER138C	__________	+1.17	15958128	18592972	unknown	unknown
YGL139W	__________	-1.42	1908616	1341060	unknown	unknown
YGR246C	BRF1______	-1.21	691148	571475	transcription	TFIIIB 70 kD subunit
YIL042C	__________	+1.24	207744	258384	unknown	unknown; similar to mitochondrial branched chain
YJL140W	RPB4______	-1.03	899556	873762	transcription	RNA polymerase II 32 kDa subunit
YKL136W	__________	+1.06	139557	147713	unknown	unknown
YLR070C	__________	+1.16	132526	154325	unknown	unknown; similar to sugar dehydrogenases
YLR440C	__________	-1.06	275805	260067	unknown	unknown
YNL231C	PDR16_____	-1.21	1047990	864623	drug resistance	unknown
YOL135C	MED7______	-1.07	332613	311282	transcription	RNA polymerase II mediator subunit
YOR345C	__________	-1.06	117622	111183	unknown	unknown
YPR042C	PUF2______	-1.10	110349	99966	unknown	mRNA binding protein
YBR020W	GAL1______	+1.07	302649	324389	galactose metabolism	galactokinase
YCL043C	PDI1______	+2.55	1303085	3321624	protein folding	protein disulfide isomerase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YDL137W	ARF2______	+1.33	3449278	4582687	secretion	ADP-ribosylation factor
YEL042W	GDA1______	+1.18	538545	638015	Golgi organization	Golgi membrane guanosine diphosphatase
YGR060W	ERG25_____	-1.33	238199	178772	sterol metabolism	C-4 sterol methyl oxidase
YHR075C	PPE1______	+1.05	257152	270793	protein synthesis	ribosomal protein, mitochondrial small subunit; carboxymethyl esterase
YJR106W	ECM27_____	+1.35	135240	182712	cell wall biogenesis	unknown
YKR103W	__________	+1.04	99819	103759	unknown	ATP-binding cassette (ABC) superfamily
YML126C	ERG13_____	-1.42	2686789	1887975	sterol metabolism	3-hydroxy-3-methylglutaryl coenzyme A synthase
YNL041C	__________	+1.06	177097	188174	unknown	unknown
YOR159C	SME1______	-1.09	426345	389369	mRNA splicing	U1, U2 snRNP protein
YPL137C	__________	-1.05	146658	139298	unknown	unknown; similar to Mhp1p
YAL054C	ACS1______	-1.01	109733	109096	acetyl-CoA biosynthesis	acetyl-CoA synthetase
YBR220C	__________	-1.07	245878	230355	unknown	unknown; similar to E. coli ampG protein
YDR091C	RLI1______	+1.19	622344	740759	unknown	unknown; similar to members of the ATP-binding cassette
YDR458C	__________	+1.17	246754	289512	unknown	unknown
YGL151W	NUT1______	+1.04	105978	109966	mating type switching	negative regulator of HO endonuclease
YGR258C	RAD2______	+1.12	133192	148819	DNA repair, nucleotide excision	single-stranded DNA endonuclease
YIL054W	__________	-1.05	111774	106936	unknown	unknown
YJL152W	__________	+1.77	631820	1118614	unknown	unknown
YKL148C	SDH1______	+1.49	231620	344768	TCA cycle, oxidative phosphorylation	succinate dehydrogenase flavoprotein subunit
YLR082C	SRL2______	+1.04	118990	123921	unknown	unknown; suppressor of Rad53 lethality
YLR452C	SST2______	-1.92	783112	408405	mating	negative regulator of Gpa1
YMR185W	__________	+1.10	240673	264301	unknown	unknown
YNL243W	SLA2______	+1.19	849437	1010331	cytoskeleton	talin-like protein
YOL147C	PEX11_____	+1.08	464860	503459	peroxisome biogenesis	peripheral membrane protein
YOR357C	GRD19_____	+1.09	460278	502936	secretion	Golgi protein retention
YPR054W	SMK1______	-1.13	146855	129502	sporulation	MAP kinase
YBR032W	__________	-1.00	160480	160069	unknown	unknown
YCL055W	KAR4______	+1.08	234397	252287	karyogamy	transcription factor
YDL149W	APG9______	-1.05	173783	165530	autophagy	unknown; integral membrane protein
YDR270W	CCC2______	-1.10	182093	165576	oxidative phosphorylation	Cu(2+)-transporting ATPase
YEL054C	RPL12A____	-1.30	14308887	11046428	protein synthesis	ribosomal protein L12A
YGR072W	UPF3______	+1.03	321311	330223	mRNA decay, nonsense-mediated	unknown
YHR086W	NAM8______	+1.17	188089	220257	RNA splicing, mitochondrial	RNA binding protein
YJR118C	ILM1______	-1.05	544091	516385	mitochondrial genome maintenance (putative)	unknown
YLR266C	__________	+1.05	165527	174171	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YMR005W	MPT1______	-1.01	505198	501223	protein synthesis	unknown
YNL053W	MSG5______	+1.63	268489	436327	signaling, pheromone pathway	dual-specificity protein phosphatase
YOR171C	LCB4______	+1.19	377707	449026	sphingolipid metabolism	long chain base kinase
YPL149W	APG5______	+2.02	351926	710844	autophagy	unknown
YAL065C	__________	+1.31	178323	233539	unknown	unknown; similar to Flo1p
YBR232C	__________	-1.02	123689	121304	unknown	unknown
YDR101C	__________	-1.16	1328188	1142449	unknown	unknown
YDR470C	__________	+1.09	203339	220645	unknown	unknown; mitochondrial carrier (MCF) family
YGL163C	RAD54_____	+1.00	118616	119180	DNA repair	DNA-dependent ATPase
YGR270W	YTA7______	+1.10	127981	140479	protein degradation	26S proteasome subunit; ATPase
YIL066C	RNR3______	-1.09	210582	192483	DNA repair	repair-induced ribonucleotide reductase
YJL164C	SRA3______	+1.62	193277	312304	signaling	cAMP-dependent protein kinase subunit
YKL160W	__________	+1.16	1152063	1335932	unknown	unknown
YLR094C	GIS3______	+1.43	245822	351941	unknown	unknown
YLR464W	__________	+1.15	309305	356043	unknown	unknown; similar to other subtelomerically-coded proteins
YMR196W	__________	-1.03	809607	789529	unknown	unknown
YNL255C	GIS2______	+1.02	3268592	3338741	unknown	unknown; gig3 suppressor
YOL159C	__________	+1.82	315055	573690	unknown	unknown; similar to Ovis aries melatonin receptor
YOR369C	RPS12_____	+1.12	15958128	17817665	protein synthesis	ribosomal protein S12
YPR066W	UBA3______	-1.05	474747	450603	protein degradation, Rub1p-mediated	Rub1p activating protein
YBR044C	TCM62_____	+1.02	163397	167101	protein folding	chaperone, mitochondrial (putative)
YCL067C	HMLALPHA2_	-1.49	685687	460297	transcription	silenced copy at HML; see YCR039C
YDL161W	ENT1______	-1.04	587636	567717	endocytosis (putative)	unknown; epsin homolog
YDR282C	__________	+1.05	183774	193790	unknown	unknown
YEL065W	SIT1______	-1.21	223361	185034	transport	Ferrioxamine B permease
YGR084C	MRP13_____	+1.06	343621	363357	protein synthesis	ribosomal protein, mitochondrial small subunit
YHR098C	SFB3______	+1.35	559541	758146	unknown	unknown; binds Sed3p and Sec23p
YJR130C	STR2______	+1.32	256912	337948	methionine biosynthesis	O-succinylhomoserine (thiol)-lyase
YLR278C	__________	+1.09	105999	115204	unknown	unknown; similar to transcription factors, has Zn[2]-Cys]
YMR017W	SPO20_____	-1.19	153717	129487	sporulation	SNAP 25 homolog; prospore membrane formation
YNL063W	__________	+1.06	327875	346165	unknown	unknown; similar to Mycoplasma protophorphyrinogen oxidase
YOR183W	__________	-1.07	136687	127912	unknown	unknown
YPL161C	BEM4______	-1.03	115375	111804	bud emergence	interacts with Rho-type GTPases
YAR015W	ADE1______	-1.45	2101024	1446386	purine biosynthesis	phosphoribosylaminoimidazole-succinocarboxamide synthase
YBR244W	GPX2______	-1.17	936326	803621	mitochondrial morphology; glutathione metabolism (putative)	glutathione peroxidase (putative)
YDR113C	PDS1______	-1.06	270485	254462	cell cycle	anaphase inhibitor (putative)
YDR482C	__________	+1.23	414005	509773	unknown	unknown
YER169W	RPH1______	-1.01	183218	181580	DNA repair	transcriptional repressor of PHR1
YGL175C	SAE2______	+1.22	126390	154374	meiosis, recombination	unknown
YGR282C	BGL2______	+3.37	2738055	9229222	cell wall biogenesis	endo-beta-1,3-glucanase
YIL075C	RPN2______	+1.36	717788	975840	tRNA processing	26S proteasome subunit)
YJL176C	SWI3______	+1.46	358029	522133	transcription	component of SWI/SNF global activator complex
YKL172W	EBP2______	-1.19	1566582	1320235	unknown	unknown; EBNA1-binding protein homolog
YLR106C	__________	+1.11	115529	128272	unknown	unknown; similar to Rnh70p
YMR208W	ERG12_____	-1.31	572747	436145	sterol metabolism	mevalonate kinase
YNL267W	PIK1______	-1.02	117848	115838	cytokinesis	phosphatidylinositol 4-kinase
YOR005C	DNL4______	-1.07	316183	294707	DNA repair	DNA ligase IV homologue
YOR381W	FRE3______	-1.01	127520	125811	unknown	unknown; similar to Fre2p
YPR078C	__________	+1.93	145721	281583	unknown	unknown
YBR056W	__________	+2.63	305441	801918	unknown	unknown; similar to glucan-1,3-beta-glucosidase
YCLX06C	__________	-1.03	531013	516893
YDL173W	__________	+1.69	456196	771659	unknown	unknown
YDR294C	DPL1______	+1.19	397717	475207	phospholipid metabolism	dihydrosphingosine phosphate lyase
YEL076C	__________	+1.18	190137	225012	unknown	unknown; similar to other subtelomerically-encoded proteins
YGR096W	__________	+1.02	185693	189445	unknown	unknown
YHR110W	ERP5______	+1.01	625476	633559	membrane trafficking; secretion (putative)	unknown
YJR142W	__________	+1.44	342698	494988	unknown	unknown; similar to thiamine pyrophosphokinase
YLR289W	GUF1______	-1.04	129595	124397	unknown	GTPase; similar to E. coli LepA
YMR029C	__________	+1.03	388594	399364	unknown	unknown
YNL075W	IMP4______	-1.31	706462	537691	rRNA processing	U3 snoRNP protein
YOR193W	__________	+1.38	295233	407618	unknown	unknown
YPL173W	MRPL40____	-1.10	393775	358072	protein synthesis	ribosomal protein, mitochondrial L40
YAR037W	__________	-1.59	164038	103437
YBR256C	RIB5______	+1.04	631682	657405	flavin biosynthesis	riboflavin synthase, alpha chain
YDR125C	ECM18_____	-1.19	145906	122250	cell wall biogenesis	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YDR494W	__________	-1.25	324892	259486	unknown	unknown
YER180C	ISC10_____	+1.05	258820	270701	meiosis, spore formation	unknown
YGL187C	COX4______	+1.24	1078607	1335591	oxidative phosphorylation	cytochrome-c oxidase subunit IV
YGR294W	__________	+1.27	525687	668815	unknown	PAU1 unknown; family
YIL086C	__________	-1.44	278423	193436	unknown	unknown
YJL188C	__________	-1.42	14142690	9976089	unknown	unknown
YKL184W	SPE1______	+1.08	925128	1003362	polyamine biosynthesis	ornithine decarboxylase
YLR118C	__________	+1.19	380829	452371	unknown	unknown
YMR220W	ERG8______	-1.06	822864	778549	sterol metabolism	phosphomevalonate kinase
YNL279W	PRM1______	-1.13	153300	135587	mating (putative)	unknown; pheromone-regulated membrane protein
YOR017W	PET127____	-1.04	354494	341695	protein synthesis	mitochondrial translation
YOR393W	ERR1______	-1.65	275504	166683	unknown	enolase homolog
YPR090W	__________	+1.03	203683	210072	unknown	unknown
YBR068C	BAP2______	-1.15	114319	99366	transport	branched-chain amino acid permease
YCR006C	__________	-1.18	141296	119956	unknown	unknown
YDL185W	TFP1______	+1.32	999501	1319811	vacuolar acidification	vacuolar H+-ATPase subunit
YDR306C	__________	+1.15	161897	186563	unknown	unknown
YER009W	NTF2______	+1.07	2426013	2591114	nuclear protein targeting	nuclear transport factor
YGR108W	CLB1______	+1.34	597540	799466	cell cycle	G2/M cyclin
YHR122W	__________	-1.10	760769	692960	unknown	unknown
YJR154W	__________	-1.26	164548	130908	unknown	unknown
YLR301W	__________	+1.22	1162617	1417130	unknown	unknown
YMR040W	__________	+1.90	167494	318783	unknown	unknown; similar to Ykl065p
YNL087W	__________	-1.22	960026	786975	unknown	unknown
YOR205C	__________	-1.08	213033	197341	unknown	unknown
YPL184C	__________	-1.16	122512	105190	unknown	unknown
YBL005W	PDR3______	-1.21	165229	137048	transport	transcription factor
YBR268W	MRPL37____	-2.03	440206	216688	protein synthesis	ribosomal protein, mitochondrial L37
YDL007W	RPT2______	-1.23	584285	476722	protein degradation	26S proteasome subunit
YDR137W	RGP1______	-1.37	260749	189650	unknown	unknown
YDR506C	__________	-1.07	137304	127967	unknown	unknown; similar to Fet5p
YFL005W	SEC4______	-1.23	354420	289253	secretion	ras-like GTPase; post-Golgi
YGL199C	__________	+1.13	268493	303740	unknown	unknown
YHL006C	__________	-1.02	159584	155845	unknown	unknown
YIL098C	FMC1______	-1.26	268677	212571	respiration (putative)	production or assembly of mitochondrial cytochromes
YJL200C	__________	-1.78	726802	408114	unknown	unknown; similar to aconitase, has potential mitochondrial
YKL196C	YKT6______	+1.13	897814	1012691	secretion	ER-to-Golgi v-SNARE
YLR130C	ZRT2______	-1.49	446548	300244	transport	zinc transporter
YML007W	YAP1______	+1.15	452557	519268	oxidative stress	transcriptional activator
YMR232W	FUS2______	-1.20	233508	195310	mating; cell fusion	fus1 suppressor
YNL289W	PCL1______	+1.28	742299	947219	cell cycle	G1/S cyclin
YOR029W	__________	-1.13	149257	132016	unknown	unknown
YPL007C	TFC8______	+1.09	220862	239949	transcription	TFIIIC subunit
YPR102C	RPL11A____	+1.29	13914930	17954800	protein synthesis	ribosomal protein L11A
YBR080C	SEC18_____	+1.33	294605	392756	secretion	NSF; vesicle fusion
YCR018C	SRD1______	+1.01	89931	91266	rRNA processing	nucleolar protein
YDL197C	ASF2______	-1.23	178261	145112	transcription	anti-silencing protein
YER019C	SBH2______	+1.12	218491	244820	secretion	ER protein translocation complex subunit
YGL007W	__________	-1.13	105479	93509	unknown	unknown
YGR118W	RPS23A____	-1.01	15731037	15566727	protein synthesis	ribosomal protein S23A
YHR133C	__________	-1.01	1075426	1068625	unknown	unknown
YJL007C	__________	-1.26	208532	166138	unknown	unknown
YKL006W	RPL14A____	-1.35	12060412	8915233	protein synthesis	ribosomal protein L14A
YLL007C	__________	-1.24	311395	250439	unknown	unknown
YNL099C	__________	+1.02	552883	565701	unknown	unknown
YOL007C	CSI2______	+3.02	297657	899852	cell wall biogenesis	chitin synthase 3 subunit
YOR217W	RFC1______	-1.09	504282	462434	DNA replication	DNA replication factor C 95 KD subunit
YPL196W	__________	+1.23	319401	393313	unknown	unknown
YAR064W	__________	+1.06	120157	126940	unknown	unknown
YBL017C	PEP1______	+1.02	171734	175844	vacuolar protein targeting	CPY sorting receptor
YBR280C	__________	+1.09	125025	136224	unknown	unknown; similar to Srm1p/Prp20p
YDL019C	__________	-1.33	380436	287045	unknown	unknown; similar to Swh1p
YDR149C	__________	-1.15	124806	108749	unknown	unknown
YDR518W	EUG1______	+1.59	249352	396923	protein folding	protein disulfide isomerase
YFL014W	HSP12_____	+1.72	159498	274095	glucose and lipid utilization	heat shock protein
YGL211W	__________	-1.19	230485	193362	unknown	unknown
YHL015W	RPS20_____	-1.18	7810021	6614551	protein synthesis	ribosomal protein S20
YIL109C	SEC24_____	+1.37	619529	849373	secretion	vesicle coat component
YJL212C	OPT1______	-1.58	365105	231296	transport	oligopeptide transporter
YKL208W	CBT1______	+1.13	180480	204656	mRNA processing, COB mRNA	unknown
YLR142W	PUT1______	+1.67	112150	187209	proline utilization	proline oxidase
YML016C	PPZ1______	+1.53	232781	357206	stress response	ser/thr phosphatase
YMR244W	__________	-1.66	245908	148074	unknown	unknown; similar to Nca3p
YNL301C	RPL18B____	-1.24	12585476	10174381	protein synthesis	ribosomal protein L18B
YOR041C	__________	-1.09	301634	277003	unknown	unknown
YPL019C	PHM2______	-1.58	293907	185462	phosphate metabolism (putative)	polyphosphate synthetase (putative)
YPR114W	__________	-1.07	473503	444211	unknown	unknown
YBR090C	__________	+1.03	325117	334001	unknown	unknown
YCR028C	FEN2______	-1.03	110672	107884	unknown	unknown; similar to Dal5p and members of the allantoate
YDL209C	__________	-1.26	248515	197224	unknown	unknown
YDR328C	SKP1______	+1.04	753238	785069	mitosis	kinetochore protein
YER031C	YPT31_____	-1.01	1151684	1139427	secretion	rab GTPase; intra-Golgi
YGL019W	CKB1______	-1.06	546241	516129	salt tolerance	casein kinase II subunit
YGR130C	__________	-1.01	409453	406038	unknown	unknown; similar to Entamoeba histolytica myosin heavy chain
YHR143W	__________	-1.11	421015	378944	unknown	unknown
YJL019W	__________	-1.12	155137	138058	unknown	unknown
YKL018W	__________	+1.04	324840	336644	unknown	unknown
YLL019C	KNS1______	+1.15	166464	191066	unknown	protein kinase
YLR324W	__________	-1.02	187385	183509	unknown	unknown
YMR061W	RNA14_____	+1.54	361417	558054	mRNA 3'-end processing	cleavage/polyadenylation factor CF I component
YNL111C	CYB5______	-2.08	851085	409437	lipid metabolism	cytochrome b5
YOL019W	__________	+1.93	280638	541258	unknown	unknown
YOR229W	WTM2______	+1.02	543566	553839	transcription	shared subunit of RNA polymerases I, II, and III
YPL208W	__________	-1.00	340407	340314	unknown	unknown
YBL029W	__________	-1.02	345623	338818	unknown	unknown
YBR292C	__________	-1.17	146461	125575	unknown	unknown
YDL031W	DBP10_____	-1.03	355299	343474	unknown	unknown; similar to RNA helicases
YDR161W	TCI1______	-1.41	587466	416166	unknown	interacts with PP2C
YDR530C	APA2______	-1.19	203789	170728	purine metabolism	ATP adenylyltransferase II
YFL024C	EPL1______	-1.08	110191	101842	unknown	putative chromatin protein

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YGL223C	__________	+1.06	174536	185063	unknown	unknown
YHL027W	RIM101____	+1.52	303536	460041	meiosis	transcription factor
YIL121W	__________	+1.75	158266	277052	unknown	unknown; major facilitator superfamily
YJL225C	__________	+1.94	795903	1540533	unknown	unknown; similar to other subtelomerically-encoded proteins
YKL220C	FRE2______	-1.09	124108	113777	iron homeostasis	ferric (and cupric) reductase
YLR154C	__________	+1.30	239277	311211	unknown	unknown
YML028W	TSA1______	+1.14	12284231	13978704	oxidative stress response	thiol-specific
YNL313C	__________	-1.29	216148	167404	unknown	unknown
YOR053W	__________	+1.04	1648889	1710774	unknown	unknown; similar to protamines
YPL031C	PHO85_____	+1.06	576275	610643	phosphate metabolism; cell cycle; glycogen metabolism	protein kinase
YPR126C	__________	+1.11	326109	360740	unknown	unknown
YBR102C	EXO84_____	-1.15	247039	214618	secretion	exocyst complex subunit
YCR039C	MATALPHA2_	-1.68	467962	278877	transcription	a-specific gene repressor
YDL221W	__________	-1.07	230159	215372	unknown	unknown
YDR340W	__________	-1.79	3345421	1864700	unknown	unknown; similar to Cyc1/Cyp3 transcription activator
YER042W	MXR1______	-1.13	671600	596603	oxidative stress response	peptide-methionine sulfoxide reductase
YGL031C	RPL24A____	-1.01	15674621	15500183	protein synthesis	ribosomal protein L24A
YGR142W	BTN2______	-1.25	449259	358337	unknown	unknown
YHR155W	__________	-1.03	131448	127971	unknown	unknown; similar to Sip3p
YJL031C	BET4______	+1.24	357812	444261	protein processing	geranylgeranyl transferase subunit
YKL030W	__________	-1.64	749983	457636	unknown	unknown
YLL031C	GPI13_____	-1.07	186256	174609	protein processing	phosphoryltransferase (GPI anchor synthesis)
YLR336C	SGD1______	-1.18	212598	180806	signaling (putative)	high osmolarity pathway
YMR073C	__________	+1.63	447172	727774	unknown	unknown; similar to rat cytochrome b5
YNL123W	__________	+1.01	371262	376044	unknown	unknown
YOL031C	__________	+1.55	619847	959395	unknown	unknown; similar to Yarrowia lipolytica Sls1 protein
YOR241W	MET7______	-1.10	749672	679150	methionine biosynthesis	folylpolyglutamate synthase
YPL220W	RPL1A_____	+1.16	15958128	18536540	protein synthesis	ribosomal protein L1A
YBL041W	PRE7______	+1.29	730688	941342	protein degradation	20S proteasome subunit
YDL043C	PRP11_____	-1.28	204206	159566	mRNA splicing	U2, U5, U4/U6 snRNP protein
YDR171W	HSP42_____	+1.13	336152	381285	cytoskeleton assembly	heat shock protein, similar to HSP26
YDR542W	__________	+1.56	274100	426748	unknown	unknown
YFL034W	__________	-1.15	161654	140822	unknown	unknown
YGL234W	ADE5,7____	-1.34	1690775	1264917	purine biosynthesis	phosphoribosylamine-glycine ligase and phosphoribosylformylglycinamidine cyclo-ligase
YHL038C	CBP2______	-1.04	252364	243414	mRNA splicing, COB mRNA	pre-mRNA binding protein
YIL133C	RPL16A____	-1.44	11310870	7871533	protein synthesis	ribosomal protein L16A
YJR011C	__________	-1.06	281250	266025	unknown	unknown
YKR007W	__________	-1.09	514147	472568	unknown	unknown
YLR164W	__________	-1.19	171943	144704	unknown	unknown; similar to Sdh4p
YML038C	YMD8______	+1.29	468565	603355	unknown	unknown; similar to vanadate resistance protein Gog5p
YMR268C	PRP24_____	-1.10	327358	297915	mRNA splicing	U4/U6 snRNP protein
YNL325C	FIG4______	+1.07	234491	249778	mating (putative)	unknown; induced by mating factor
YOR065W	CYT1______	-1.01	1085475	1075119	oxidative phosphorylation	cytochrome c1
YPL043W	NOP4______	-1.13	569923	504035	rRNA processing	RNA binding protein
YBR113W	__________	-1.61	963369	598355	unknown	unknown
YCR051W	__________	-1.29	850344	659779	unknown	unknown; similar to ankyrin and coiled-coil protein
YDL233W	__________	+1.38	209961	289200	unknown	unknown
YDR352W	__________	-1.02	328381	320388	unknown	unknown
YER052C	HOM3______	+1.23	514715	633772	Met. and Thr. biosynthesis	aspartate kinase
YGL043W	DST1______	-1.08	109999	101525	transcription	elongation factor TFIIS
YGR154C	__________	+1.11	151495	168280	unknown	unknown
YHR167W	__________	-1.04	221284	213340	unknown	unknown
YJL044C	GYP6______	+1.04	507504	525955	secretion	GTPase-activating protein for Ypt6
YKL041W	VPS24_____	+1.11	409739	453364	vacuolar protein targeting	component of class E protein complex
YLL043W	FPS1______	-1.02	470469	463076	transport	glycerol channel protein
YLR348C	DIC1______	+1.14	205252	234763	transport	mitochondrial dicarboxylate carrier
YNL135C	FPR1______	+1.51	1157305	1746454	protein folding	peptidyl-prolyl cis-trans isomerase
YOL043C	NTG2______	+1.05	274384	287434	DNA repair	endonuclease III-like glycosylase
YOR253W	__________	-1.43	1078746	753446	unknown	unknown
YPL232W	SSO1______	+1.33	1316424	1746372	secretion	post-Golgi t-SNARE
YBL053W	__________	-1.22	322699	263451	unknown	unknown
YDL055C	PSA1______	+1.01	3285800	3304618	mannose metabolism	mannose-1-phosphate guanyltransferase
YDR182W	CDC1______	+1.16	413051	479426	Mn2+ ion homeostasis	unknown
YFL046W	__________	+1.24	339413	420301	unknown	unknown; similar to myosin heavy chain A
YGL246C	RAI1______	-1.08	524775	484221	unknown	unknown; similar to C. elegans DOM-3 (GB:1004375)
YHL049C	__________	+1.38	258751	358223	unknown	unknown; similar to other subtelomerically-encoded proteins
YIL145C	__________	+1.22	596565	727174	unknown	unknown; similar to E. coli pantoate beta-alanine ligase
YJR023C	__________	+1.14	185706	211828	unknown	unknown; similar to sodium channel proteins
YKR019C	IRS4______	+1.06	160465	169478	silencing (rDNA)	unknown
YLR176C	RFX1______	-1.03	158384	153399	unknown	unknown; DNA binding protein
YMR280C	CAT8______	+1.04	390049	403940	gluconeogenesis	transcription factor
YNL337W	__________	+1.12	136820	153863	unknown	unknown
YOR077W	RTS2______	-1.06	171587	161147	unknown	unknown; similar to mouse KIN7 protein
YPL055C	__________	+1.32	354947	467174	unknown	unknown
YPR148C	__________	+1.60	644697	1030795	unknown	unknown
YBR125C	PTC4______	+1.17	310435	362412	unknown	protein phosphatase type 2C
YCR063W	__________	-1.09	131078	120563	unknown	unknown; similar to Xenopus G10, a developmentally-regulated
YDL245C	HXT15_____	+1.11	146320	162635	transport	hexose permease
YDR364C	CDC40_____	+1.06	245830	260817	cell cycle and mRNA splicing	unknown
YER062C	HOR2______	-1.25	2190572	1745515	glycerol metabolism	DL-glycerol-3-phosphatase
YGL055W	OLE1______	-1.07	2152951	2019969	fatty acid metabolism	delta-9-fatty acid desaturase
YGR162W	TIF4631___	-1.13	526963	467467	protein synthesis	mRNA cap-binding protein (eIF4F) 150K subunit
YHR179W	OYE2______	+1.94	3267831	6340254	unknown	NAPDH dehydrogenase (old yellow enzyme)
YJL056C	ZAP1______	+1.10	157296	172905	transport (Zn)	transcription factor
YKL053W	__________	+1.06	407603	433703	unknown	unknown
YLL055W	__________	-1.01	113972	112923	unknown	unknown; similar to Dal5p and members of the allantoate
YLR360W	VPS38_____	+1.15	369459	423938	vacuolar protein targeting	unknown
YMR095C	SNO1______	+1.03	141020	144893	unknown	unknown; induced in stationary phase
YNL147W	LSM7______	+1.10	666895	733671	mRNA splicing (putative)	similar to snRNA-associated protein
YOL053W	__________	+1.17	232197	270573	unknown	unknown
YOR265W	RBL2______	+1.03	566660	586220	cytoskeleton	beta-tubulin binding protein
YPL244C	HUT1______	+1.13	300454	338951	unknown	unknown
YBL065W	__________	+1.04	90774	94827	unknown	unknown
YDL067C	COX9______	+1.48	636365	942712	oxidative phosphorylation	cytochrome c oxidase assembly
YDR194C	MSS116____	-1.10	418766	382142	mRNA splicing, mitochondrial	RNA helicase
YFL058W	THI5______	+1.73	141541	244502	pyrimidine biosynthesis	unknown
YGL258W	__________	+1.03	150068	155238	unknown	unknown
YHR009C	__________	+1.16	327326	380822	unknown	unknown
YJR034W	PET191____	-1.04	268088	257208	respiration	cytochrome c oxidase assembly
YKR031C	SPO14_____	-1.05	113083	108183	meiosis	phospholipase D

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YLR188W	MDL1______	+1.23	199171	244225	transport	ATP-binding cassette (ABC) family
YML058W	SML1______	+2.41	1439577	3469671	DNA replication (putative)	regulator of ribonucleotide reductase (putative)
YMR291W	__________	+1.58	203269	321365	unknown	unknown
YNR010W	CSE2______	+1.36	202426	274591	mitosis, chromosome segregation	kinetochore protein (putative)
YOR089C	VPS21_____	+1.17	846399	990651	endocytosis	rab5-like GTPase
YPL065W	VPS28_____	+1.12	277677	311285	vacuolar protein targeting	cytoplasmic protein
YBR137W	__________	+1.09	97990	106445	unknown	unknown
YCR073W	SOL2______	-1.06	90004	84900	tRNA splicing, putative	unknown
YDR009W	GAL3______	+1.04	109996	114017	galactose metabolism	galactokinase
YDR374C	__________	-1.06	102416	96297	unknown	unknown
YER071C	__________	+1.02	181895	185561	unknown	unknown
YGL067W	NPY1______	-1.01	97087	95876	NAD metabolism	NAD+ pyrophosphatase
YGR174C	CBP4______	+1.07	418990	450081	respiration	ubiquinol--cytochrome-c reductase assembly factor
YHR191C	CTF8______	-1.10	502737	456204	mitosis (putative)	kinetochore protein (putative)
YJL068C	__________	+1.63	329481	536261	unknown	unknown; similar to human esterase D
YKL065C	YET1______	+2.81	758128	2130392	unknown	ER 25 kDa transmembrane protein
YLL067C	__________	+1.09	119288	130319	unknown	unknown; similar to other subtelomerically-encoded proteins
YLR372W	SUR4______	+1.00	1228994	1231999	fatty acid metabolism	conversion of 24-carbon to 26-carbon fatty acids
YMR107W	__________	+1.04	132117	137991	unknown	unknown
YNL159C	__________	+1.44	281021	404398	unknown	unknown
YOL065C	INP54_____	+1.11	287570	319946	unknown	putative inositol polyphosphate 5-phosphatase
YOR277C	__________	-1.16	2258923	1954331	unknown	unknown
YPL255W	BBP1______	+1.05	297642	313605	cell cycle and meiosis	unknown
YMR322C	__________	-1.08	130731	120547	unknown	unknown
YBL077W	__________	-1.27	2253815	1772390	unknown	unknown
YDL079C	MRK1______	-1.27	213687	168261	unknown	protein kinase
YDR206W	EBS1______	-1.13	185593	164837	unknown	unknown; similar to Est1p; bcy1 suppressor
YFR002W	NIC96_____	+1.04	306481	320023	nuclear protein targeting	nuclear pore protein
YGR007W	MUQ1______	-1.03	453500	440966	phospholipid metabolism	choline phosphate cytidylyltransferase
YHR021C	RPS27B____	-1.38	6484790	4693708	protein synthesis	ribosomal protein S27B
YIL168W	SDL1______	-1.40	242074	173349	gluconeogenesis	serine dehydratase
YJR046W	TAH11_____	+1.04	408004	426002	unknown	unknown
YKR043C	__________	+1.37	786212	1078474	unknown	unknown
YLR200W	YKE2______	-1.26	590290	470017	cytoskeleton	microtubule nucleation
YML070W	DAK1______	+1.50	464555	698514	carbohydrate metabolism; stress response	dihydroxyacetone kinase
YMR302C	PRP12_____	+1.19	244728	292204	rRNA processing	mitochondrial inner membrane protein
YNR022C	__________	-1.27	489141	384009	unknown	unknown
YOR101W	RAS1______	-1.71	718587	419521	signaling, Ras pathway	GTP-binding protein, ras homolog
YPL077C	__________	+1.20	194613	233562	unknown	unknown; similar to Ybr197p
YPR168W	NUT2______	-1.03	117569	113639	mating type switching	negative regulator of HO expression
YBR149W	ARA1______	+2.09	616000	1287237	arabinose metabolism	arabinose dehydrogenase
YCR087W	__________	-1.80	2890502	1603515	unknown	unknown
YDR021W	FAL1______	-1.39	460595	331087	rRNA processing	RNA helicase
YDR386W	MUS81_____	-1.09	165364	152195	DNA repair (putative)	unknown
YER083C	__________	-1.00	731763	728145	unknown	unknown
YGL079W	__________	-1.05	306209	290807	unknown	unknown
YGR186W	TFG1______	+1.05	774185	812501	transcription	TFIIF 105 kD subunit
YHR203C	RPS4B_____	+1.16	15826584	18419248	protein synthesis	ribosomal protein S4B
YJL080C	SCP160____	-1.10	1218193	1105995	mitosis, chromosome transmission	unknown
YKL077W	__________	+1.07	712088	761722	unknown	unknown
YLR012C	__________	-1.27	268596	211691	unknown	unknown
YLR384C	IKI3______	-1.17	1314668	1127311	killer toxin sensitivity	unknown
YMR119W	__________	-1.03	228114	221513	unknown	unknown
YNL171C	__________	+1.15	177171	203939	unknown	unknown
YOL077C	__________	-1.45	2155469	1484005	unknown	unknown; similar to C. elegans Kq2H4.3 protein
YOR289W	__________	+2.11	198792	419019	unknown	unknown
YPL265W	DIP5______	-1.97	428641	217412	transport	dicarboxylic amino acid permease
YBL089W	__________	-1.24	103919	83630	unknown	major facilitator superfamily
YDL091C	__________	+1.12	201649	226274	unknown	unknown
YDR214W	__________	+1.41	652824	922961	unknown	unknown
YFR014C	CMK1______	+1.02	229687	233224	signaling	calmodulin-dependent protein kinase
YGR019W	UGA1______	+1.79	228415	407921	GABA metabolism	4-aminobutyrate aminotransferase (GABA transaminase)
YHR032W	__________	-1.14	290579	254032	unknown	major facilitator superfamily
YIR002C	MPH1______	+1.11	270519	300739	unknown; mutator null phenotype	unknown; similar to ATP-dependent RNA helicases
YJR058C	APS2______	+1.06	486740	513879	secretion	AP-1 complex subunit
YKR055W	RHO4______	-1.01	222246	219929	signaling	GTP-binding protein, rho family
YLR212C	TUB4______	-1.05	335268	320775	cytoskeleton	gamma-tubulin
YML082W	__________	-1.30	263585	203166	unknown	unknown; similar to O-succinylhomoserine (thiol)-lyase
YMR312W	__________	-1.04	370614	356167	unknown	unknown
YNR034W	SOL1______	-1.25	289871	232403	tRNA splicing, putative	unknown
YOR113W	AZF1______	-1.07	144493	134548	transcription (putative)	similar to Zn-finger transcription factors
YPL089C	RLM1______	+1.06	972294	1034230	cell wall organization	MADS box transcription factor
YPR180W	AOS1______	+1.13	394046	446042	protein degradation, Smt3p-mediated	Smt3p activating protein
YBR161W	__________	+1.11	226681	251663	unknown	unknown; similar to Sur1p, Hoc1p, and Och1p
YCR097W	HMRA1_____	+3.59	121334	435021
YDR033W	MRH1______	+1.02	2236757	2287328	unknown	similar to Yro2p and Hsp30p
YDR398W	__________	-1.14	235346	206209	unknown	unknown
YGL091C	NBP35_____	+1.13	369248	417704	unknown	unknown; essential; similar to bacterial partitioning ATPases
YGR198W	__________	+1.20	706431	844743	unknown	unknown
YJL092W	HPR5______	+1.11	195414	216211	meiosis	DNA helicase
YKL089W	MIF2______	-1.01	220720	219134	mitosis	centromere protein
YLR024C	UBR2______	-1.08	535614	497523	protein degradation, ubiquitin-mediated	ubiquitin-protein ligase
YLR396C	VPS33_____	-1.12	659356	587583	vacuolar protein targeting	Sec1 protein family
YMR130W	__________	-1.06	525591	496586	unknown	unknown
YNL183C	NPR1______	-1.08	190249	175657	transport	protein kinase; regulates activity of nitrogen source transporters
YOL089C	HAL9______	+1.08	228719	246494	salt tolerance	transcription factor (putative)
YOR300W	__________	+1.34	235280	314540	unknown	unknown
YPL277C	__________	+1.22	198177	242192	unknown	unknown
YAL009W	SPO7______	-1.05	87987	84099	meiosis	unknown
YBR173C	UMP1______	-1.14	343402	302521	protein degradation, ubiquitin-mediated	20S proteasome maturation factor
YCRX03C	__________	-1.02	94886	92822
YDR044W	HEM13_____	+1.02	270732	275349	heme biosynthesis	coproporphyrinogen III oxidase
YDR411C	__________	+1.12	317735	355925	unknown	unknown
YER106W	__________	-1.03	104709	101726	unknown	unknown
YGL104C	__________	+1.05	139269	146653	unknown	unknown; similar to glucose transport proteins
YGR211W	ZPR1______	-1.21	604777	501230	unknown	unknown; zinc finger protein
YIL008W	URM1______	-1.07	505119	471352	protein modification	ubiquitin-like protein
YJL105W	__________	-1.14	150033	131453	unknown	unknown; similar to Ykr029p
YKL101W	HSL1______	+1.74	370499	643122	cell cycle	negative regulator of swe1 kinase
YLR409C	__________	-1.11	179659	161444	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YNL196C	SLZ1______	-1.46	233963	160383	meiosis	unknown
YOL102C	TPT1______	-1.21	387580	320381	tRNA splicing	2'-phosphotransferase
YOR312C	RPL20B____	-1.19	14784365	12396420	protein synthesis	ribosomal protein L20B
YPR007C	SPO69_____	-1.08	193799	180067	sporulation	unknown
YBL101W	TY2A______	+1.07	1222267	1302241	unknown	unknown
YCL007C	CWH36_____	-1.08	665469	614403	cell wall biogenesis	unknown
YDL104C	QRI7______	+1.10	146099	161005	unknown	unknown; similar to E. coli orfx gene
YDR227W	SIR4______	-1.03	114710	111131	silencing	nuclear coiled-coil protein, regulator of silencing
YEL008W	__________	-1.10	121628	110202	unknown	unknown
YFR027W	ECO1______	-1.17	142082	121607	mitosis, sister chromatid cohesion (putative)	unknown
YGR030C	POP6______	-1.05	250421	239446	tRNA processing	RNase P and RNase MRP subunit
YHR044C	DOG1______	+2.04	353751	720044	2-deoxyglucose resistance	2-deoxyglucose-6-phosphate phosphatase
YIR015W	RPR2______	-1.23	133273	108619	tRNA processing	RNase P subunit
YJR071W	__________	+1.01	287150	288875	unknown	unknown
YKR068C	BET3______	+1.45	561477	813099	secretion	SNARE docking complex assembly
YLR225C	__________	+1.61	328667	529775	unknown	unknown
YNL008C	__________	+1.13	686708	775020	unknown	unknown; similar to Mdj2p, E. coli DnaJ, and other DnaJ-like
YNR047W	__________	+1.02	1001894	1017484	unknown	unknown
YOR126C	IAH1______	+1.49	356888	530563	unknown	isoamyl acetate hydrolytic enzyme
YPL102C	__________	-1.03	140313	136105	unknown	unknown
YPR193C	HPA2______	-1.10	131010	119140	chromatin structure	histone acetyltransferase complex subunit
YAL021C	CCR4______	-1.04	90270	87000	catabolite repression	component of CCR4 transcriptional complex
YBR185C	MBA1______	-1.08	208448	193029	respiration	mitochondrial respiratory complex assembly
YCRX15W	__________	-1.13	110083	97647
YDR056C	__________	-1.08	632209	585725	unknown	unknown
YDR423C	CAD1______	-1.08	250606	232606	transcription	basic leu zipper transcription factor
YER118C	SHO1______	-1.01	416568	413114	signaling, high osmolarity pathway	transmembrane osmosensor
YGL116W	CDC20_____	-1.11	256344	231958	mitosis	activator of the anaphase promoting complex
YGR223C	__________	+1.21	246600	298147	unknown	unknown
YIL019W	__________	-2.05	525018	255597	unknown	unknown
YJL117W	PHO86_____	-1.03	862202	837908	transport	inorganic phosphate permease
YKL113C	RAD27_____	-1.12	357130	317537	DNA repair	ssDNA endonuclease
YLR047C	__________	-1.20	117023	97562	unknown	unknown
YLR419W	__________	-1.07	399566	374905	unknown	unknown; similar to pre-mRNA splicing factors
YNL208W	__________	+4.33	1045700	4527209	unknown	unknown
YOL112W	MSB4______	+1.88	371135	697457	unknown	unknown; suppresses bud emergence defect
YOR324C	__________	-1.02	134755	131558	unknown	unknown
YPR019W	CDC54_____	+1.01	288108	291896	DNA replication	MCM initiator complex
YBL112C	__________	-1.06	160285	151276	unknown	unknown
YCL020W	__________	+1.16	1370872	1589363	unknown	unknown
YDL116W	NUP84_____	+1.04	268906	278596	nuclear protein targeting	nuclear pore protein
YEL019C	MMS21_____	-1.04	114214	110074	DNA repair	unknown
YHR055C	CUP1-2____	-1.24	4355957	3501458	Cu2+ ion homeostasis	metallothionein
YIR024C	GIF1______	-1.01	271022	267226	cell cycle, G1	unknown
YJR084W	__________	-1.06	281051	264728	unknown	unknown; similar to human sodium channel protein HI
YKR080W	MTD1______	-1.09	900098	823143	nucleotide metabolism	NAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase
YLR235C	__________	-1.14	117806	103225	unknown	unknown
YML104C	MDM1______	-1.10	143358	130179	cytoskeletal organization	intermediate filament protein
YNL020C	ARK1______	+1.17	368475	431046	unknown	protein kinase
YNR059W	MNT4______	+1.31	154938	203133	protein glycosylation	mannosyltransferase
YOR138C	__________	+1.15	228316	263520	unknown	unknown
YPL114W	__________	-1.09	174151	159296	unknown	unknown
YAL032C	PRP45_____	+1.01	175109	177587	mRNA splicing	U2, U5, U6 snRNP protein
YBR197C	__________	-1.00	168480	168241	unknown	unknown
YDR068W	DOS2______	-1.01	326045	322648	unknown	unknown
YDR435C	PPM1______	+1.13	210578	238467	protein modification	carboxymethyltransferase
YER129W	PAK1______	-1.01	134932	133075	DNA replication	protein kinase; suppresses pol. alpha mutations
YGL128C	__________	-1.05	544295	519145	unknown	unknown; similar to E. coli DnaJ and other DnaJ-like
YGR235C	__________	+1.09	645064	704503	unknown	unknown
YIL031W	ULP2______	+1.00	143511	143919	unknown	unknown; suppresses mif2 mutation
YJL129C	TRK1______	-1.03	420784	408279	transport	potassium permease
YKL125W	RRN3______	+1.07	306018	325944	transcription	RNA polymerase I transcription factor
YLR059C	REX2______	+1.07	364081	390018	RNA processing	RNA exonuclease
YLR429W	CRN1______	+1.35	522488	705050	cytoskeleton	coronin
YMR164C	MSS11_____	+1.14	2153140	2449177	starch metabolism	(putative) transcriptional repressor
YNL220W	ADE12_____	-1.25	2904068	2318753	purine biosynthesis	adenylosuccinate synthetase
YOL124C	__________	-1.18	854071	722871	unknown	unknown
YOR336W	KRE5______	+1.05	520157	547750	cell wall biogenesis	unknown; ER resident glycoprotein
YPR031W	__________	-1.03	491503	476269	unknown	unknown; similar to human zinc finger protein PIR:JC2069
YBR011C	IPP1______	+1.24	4087425	5052396	phosphate metabolism	inorganic pyrophosphatase, cytoplasmic
YCL032W	STE50_____	+1.03	236447	243889	signaling	pheromone response
YDL128W	VCX1______	+1.14	489288	558248	transport	vacuolar H+/Ca(2+) exchanger
YDR251W	PAM1______	+1.42	215994	307078	unknown	unknown; overexpression suppresses PP2A depletion
YEL031W	SPF1______	-1.02	110534	108061	transport	(putative) Ca(2+) ATPase
YFR048W	__________	+1.10	196959	216491	unknown	unknown
YGR049W	SCM4______	-1.56	491356	315244	cell cycle	suppresses cdc4 mutation
YHR065C	RRP3______	-1.13	589815	523420	rRNA processing	RNA helicase
YIR036C	__________	+1.37	244821	336621	unknown	unknown; similar to proteins of the short-chain alcohol
YJR095W	SFC1______	-1.16	128020	110147	transport	mitochondrial succinate-fumarate carrier
YKR092C	SRP40_____	-1.01	893709	887370	transcription (putative)	Suppressor of mutant AC40 subunit of RNA polymerase I and III
YLR247C	__________	+1.31	346618	453149	unknown	unknown; similar to Rad16p
YML116W	ATR1______	-1.34	373234	277718	aminotriazole resistance	transporter (putative)
YNL032W	SIW14_____	+1.22	455559	557295	cell cycle	tyrosine phosphatase
YNR071C	__________	-1.03	144873	140414	unknown	unknown; similar to UDPglucose 4-epimerase
YOR148C	SPP2______	+1.11	319417	353370	mRNA splicing	spliceosome-associated protein
YPL126W	NAN1______	-1.19	1091709	915124	unknown	unknown; nucleolar protein
YAL042W	ERV46_____	+1.06	674739	718565	unknown	unknown; ER vesicle protein
YBR209W	__________	-1.23	120895	97964	unknown	unknown
YDR080W	VPS41_____	+1.09	282351	308566	vacuolar protein targeting	component of vacuolar membrane protein complex
YDR447C	RPS17B____	-1.42	10575736	7436523	protein synthesis	ribosomal protein S17B
YER139C	__________	+1.03	213401	218943	unknown	unknown
YGL140C	__________	-1.38	420479	305204	unknown	major facilitator superfamily
YGR247W	__________	-1.10	190921	173327	unknown	unknown
YIL043C	CBR1______	+1.30	1677133	2179855	aminosugars metabolism	cytochrome b reductase
YJL141C	YAK1______	+1.03	303079	311090	signaling	serine-threonine protein kinase
YKL137W	__________	-1.19	273279	229175	unknown	unknown
YLR071C	RGR1______	-1.01	143447	142257	transcription	RNA polymerase II mediator subunit
YLR441C	RPS1A_____	+1.18	15713716	18501546	protein synthesis	ribosomal protein S1A
YNL232W	CSL4______	-1.17	567892	487050	mitosis, chromosome segregation	unknown
YOL136C	PFK27_____	-1.25	454784	364189	fructose metabolism	6-phosphofructo-2-kinase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOR346W	REV1______	-1.22	249986	204271	DNA repair	deoxycytidyl transferase
YPR043W	RPL43A____	-1.46	15599936	10710236	protein synthesis	ribosomal protein L34A
YBR021W	FUR4______	+1.07	89979	95977	transport	uracil permease
YCL044C	__________	+1.66	186985	310403	unknown	unknown
YDL138W	RGT2______	+1.07	210401	224472	transport	glucose permease
YEL043W	__________	-1.14	211028	185857	unknown	unknown
YGR061C	ADE6______	-1.24	154198	124825	purine biosynthesis	5'-phosphoribosylformyl glycinamidine synthetase
YHR076W	__________	+1.29	475522	612736	unknown	unknown
YJR107W	__________	+1.57	299231	470716	unknown	unknown; similar to acylglycerol lipase
YKR104W	__________	+1.01	123161	124160	unknown	ATP-binding cassette (ABC) superfamily
YML127W	__________	+1.19	402411	479561	unknown	unknown
YNL042W	BOP3______	-1.24	288324	232187	unknown	unknown; bypass of PAM1
YOR160W	MTR10_____	-1.19	544491	457658	mRNA export	Npl3p import factor
YPL138C	__________	+1.10	316559	346666	unknown	unknown
YAL055W	PEX22_____	+1.16	202457	235295	peroxisome biogenesis (putative)	peroxisomal membrane anchoring protein (puttaive)
YBR221C	PDB1______	+1.10	1156161	1267644	glycolysis	pyruvate dehydrogenase
YDR092W	UBC13_____	+1.01	377399	382100	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YDR459C	__________	+1.09	204161	222978	unknown	unknown; similar to protein PIR:S51289
YER149C	PEA2______	+1.06	190893	202145	mating	unknown
YGL152C	__________	-1.03	169931	164762	unknown	unknown; similar to rat G protein-coupled glutamate
YGR259C	__________	-1.15	125620	108895	unknown	unknown
YIL055C	__________	+1.11	213986	238254	unknown	unknown
YJL153C	INO1______	+1.04	117507	122789	inositol biosynthesis	L-myo-inositol-1-phosphate synthase
YKL149C	DBR1______	+1.03	257995	265763	mRNA splicing	debranching enzyme
YLR083C	EMP70_____	-1.04	144848	138828	secretion (putative)	endosomal membrane protein
YLR453C	RIF2______	-1.03	160496	155748	silencing	RAP1-interacting protein
YMR186W	HSC82_____	+1.15	4866872	5613510	protein folding	chaperonin
YNL244C	SUI1______	-1.22	3757827	3088665	protein synthesis	translation initiation factor 3 (eIF3)
YOL148C	SPT20_____	+1.07	384297	412551	chromatin structure	histone acetyltransferase complex subunit
YOR358W	HAP5______	-1.12	295094	262984	respiration	transcription factor
YPR055W	SEC8______	+1.07	159250	170740	secretion	exocyst complex subunit
YBR033W	__________	+1.04	88246	91435	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6] cluster domain
YCL056C	__________	+1.04	288595	299368	unknown	unknown
YDL150W	RPC53_____	-1.30	703041	540674	transcription	RNA polymerase III 47 kD subunit
YDR271C	__________	+1.02	175243	179566	unknown	unknown
YEL055C	POL5______	-1.05	194782	185576	DNA replication	DNA polymerase V
YGR073C	__________	-1.09	183762	168265	unknown	unknown
YHR087W	__________	+1.12	154126	172171	unknown	unknown
YJR119C	__________	+1.08	157057	169072	unknown	unknown; similar to human retinoblastoma binding protein 2
YLR267W	BOP2______	-1.10	150254	137140	unknown	unknown; bypass of PAM1
YNL054W	VAC7______	+1.01	610321	618064	vacuole biogenesis	unknown; vacuolar integral membrane protein
YOR172W	__________	-1.01	128580	127852	unknown	unknown; similar to transcription factors
YPL150W	__________	+1.00	117850	118193	unknown	unknown
YAL066W	__________	-1.05	108754	103225	unknown	unknown
YBR233W	PBP2______	+1.07	207059	221477	unknown	interacts with Pab1p
YDR102C	__________	-1.07	104358	97721	unknown	unknown
YDR471W	RPL27B____	-1.39	13077445	9383306	protein synthesis	ribosomal protein L27B
YGL164C	__________	-1.13	138396	122137	unknown	unknown
YGR271W	__________	+1.14	340247	389279	unknown	unknown; similar to Ski2p
YJL165C	HAL5______	+1.18	357920	424064	salt tolerance	putative protein kinase
YKL161C	__________	+3.43	165271	567685	unknown	putative protein kinase
YLR095C	IOC2______	+1.07	273874	294150	unknown	unknown
YLR465C	__________	+1.00	136434	136981	unknown	unknown
YMR197C	VTI1______	+1.38	370297	512762	secretion	cis-Golgi v-SNARE
YNL256W	FOL1______	-1.42	631770	445966	folate biosynthesis	dihydroneopterin aldolase, dihydro-6-hydroxymethylpterin pyrophosphokinase, dihydropteroate synthetase
YOL160W	__________	+1.03	128731	132365	unknown	unknown
YOR370C	MRS6______	-1.01	761176	750531	protein processing	Rab geranylgeranyltransferase regulatory subunit
YPR067W	ISA2______	+1.20	285259	343495	unknown	unknown; Iron Sulfur Assembly -- IscA/NifA homolog
YBR045C	GIP1______	-1.05	88298	83822	glucose repression	(putative) Glc7p regulatory subunit
YCL068C	__________	+1.02	100173	102268	unknown	unknown
YDL162C	__________	-1.09	100510	92057	unknown	unknown
YDR283C	GCN2______	-1.04	313986	301778	protein synthesis	eIF2alpha kinase
YEL066W	HPA3______	+1.67	260647	436286	chromatin structure	histone acetyltransferase complex subunit
YGR085C	RPL11B____	+1.02	15711867	16084541	protein synthesis	ribosomal protein L11B
YHR099W	TRA1______	-1.26	548972	434416	unknown	unknown; similar to human TR-AP
YJR131W	MNS1______	-1.01	279227	275300	protein glycosylation	specific alpha-mannosidase
YLR279W	__________	-1.49	202821	136092	unknown	unknown
YMR018W	__________	+1.00	159830	160303	unknown	unknown; similar to Pex5p/Pas10p (GB:Z49211)
YNL064C	YDJ1______	+1.14	3688568	4208550	mitochondrial and ER protein targeting	HSP70 associated chaperone
YOR184W	SER1______	-1.08	2119673	1969198	serine biosynthesis	phosphoserine
YPL162C	__________	+1.45	210175	303876	unknown	unknown
YAR018C	KIN3______	-1.25	305470	244032	unknown	protein kinase
YBR245C	ISW1______	-1.24	149054	120599	unknown	unknown; similar to Drosophila nucleosome remodeling
YDR114C	__________	-1.07	149614	140027	unknown	unknown
YDR483W	KRE2______	+1.55	1383593	2143357	protein glycosylation	alpha-1,2-mannosyltransferase
YER170W	ADK2______	+1.04	205393	213541	purine metabolism	adenylate kinase,
YGL176C	__________	+1.13	165124	186057	unknown	unknown; similar to Discopyge ommata Ca++ channel alpha1
YGR283C	__________	-1.12	709532	633476	unknown	unknown
YIL076W	SEC28_____	+1.73	1186193	2054252	secretion	vesicle coat component
YJL177W	RPL17B____	-1.00	15868556	15831723	protein synthesis	ribosomal protein L17B
YKL173W	SNU114____	-1.13	505245	446598	mRNA splicing	U5 snRNP protein
YLR107W	REX3______	+1.60	274879	438627	RNA processing	RNA exonuclease
YMR209C	__________	-1.25	351650	281131	unknown	unknown
YNL268W	LYP1______	-1.05	312241	297439	transport	lysine permease
YOR006C	__________	-1.33	758265	572229	unknown	unknown
YOR382W	__________	-1.43	338521	236434	unknown	unknown
YPR079W	__________	+1.29	291903	376611	unknown	unknown
YBR057C	MUM2______	-1.22	382960	313854	meiosis	unknown; similar to ubiquitin C-terminal hydrolase
YCLX07W	__________	-1.17	137379	117718
YDL174C	DLD1______	+1.01	638543	643920	pyruvate metabolism	D-lactate dehydrogenase
YDR295C	PLO2______	-1.10	118469	107466	unknown; ploidy-related	unknown
YEL077C	__________	+1.57	814763	1281775	unknown	unknown
YGR097W	ASK10_____	+1.29	196894	253932	stress response	enhancer of SKN7-dependent transcription
YHR111W	__________	+1.20	752545	904509	unknown	unknown; similar to Uba1p and molybdopterin biosynthesis
YJR143C	PMT4______	+1.10	776167	854735	protein glycosylation	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase
YLR290C	__________	+1.22	259537	316980	unknown	unknown
YMR030W	__________	+1.16	177646	206647	unknown	unknown
YNL076W	MKS1______	+1.06	288061	304501	signaling, Ras pathway	negative regulator of cAMP-dependent genes
YOR194C	TOA1______	-1.10	629503	571408	transcription	TFIIA 32 kD subunit
YPL174C	NIP100____	-1.18	132241	111697	nuclear protein targeting	(putative) large subunit of dynactin complex

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YAR040C	__________	-1.26	116508	92130
YBR257W	POP4______	+1.02	279018	283355	rRNA and tRNA processing	RNase P and RNase MRP subunit
YDR126W	__________	-1.15	164850	142822	unknown	unknown
YDR495C	VPS3______	-1.02	322393	315434	vacuolar protein targeting	unknown
YER181C	__________	-1.45	313103	216678	unknown	unknown
YGL188C	__________	-1.08	380372	351716	unknown	unknown
YGR295C	COS6______	+2.77	1853933	5144518	unknown	unknown; similar to other subtelomerically-encoded proteins
YIL087C	__________	+1.21	294132	356132	unknown	unknown
YJL189W	RPL39_____	-1.34	6787170	5067638	protein synthesis	ribosomal protein L39
YKL185W	ASH1______	+1.56	720258	1121950	mating type switching	transcription factor
YLR119W	SRN2______	+1.03	116668	120591	RNA export, putative	unknown
YMR221C	__________	+1.10	548117	603395	unknown	major facilitator superfamily
YNL280C	ERG24_____	-1.21	163817	135032	sterol metabolism	C-14 sterol reductase
YOR018W	ROD1______	+1.17	337271	392953	drug resistance	unknown
YOR394W	__________	+1.40	264142	369619	unknown	unknown; similar to PAU1 family
YPR091C	__________	-1.03	137033	133330	unknown	unknown
YBR069C	TAT1______	-1.24	360819	290791	transport	amino acid permease
YCR007C	__________	+1.11	167527	186101	unknown	unknown; similar to subtelomerically-encoded proteins
YDL186W	__________	+1.10	166406	182243	unknown	unknown
YDR307W	__________	+1.01	221399	223783	unknown	unknown; similar to Pmt1p
YER010C	__________	+1.10	303418	333081	unknown	unknown
YGR109C	CLB6______	+1.05	177582	186120	cell cycle	B-type cyclin; S phase
YHR123W	EPT1______	+1.05	2028688	2132701	phospholipid metabolism	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferase
YJR155W	AAD10_____	+1.16	417609	484085	unknown	hypothetical aryl-alcohol dehydrogenase
YLR302C	__________	+1.21	125707	151663	unknown	unknown
YMR041C	__________	+1.41	220369	309894	unknown	unknown
YNL088W	TOP2______	-1.03	1029133	995754	DNA replication	DNA topoisomerase II
YOR206W	__________	-1.25	706011	566380	unknown	unknown
YPL185W	__________	-1.04	140595	134661	unknown	unknown
YBL006C	__________	-1.51	377399	249632	unknown	unknown
YBR269C	__________	+1.32	208394	275088	unknown	unknown
YDL008W	APC11_____	+1.03	113211	116763	mitosis	anaphase promoting complex subunit
YDR138W	HPR1______	+1.01	99971	100894	mitosis, recombination	related to topoisomerase
YDR507C	GIN4______	-1.25	460126	368140	cell cycle (growth inhibitor)	protein kinase
YFL006W	__________	-1.29	511470	395428	unknown	unknown
YGL200C	EMP24_____	+1.37	1951985	2666392	secretion	vesicle coat component
YIL099W	SGA1______	-1.12	126570	113323	sporulation	glucan 1,4-alpha-glucosidase
YJL201W	ECM25_____	-1.05	240539	228947	cell wall biogenesis	unknown
YKL197C	PEX1______	-1.00	161844	161775	peroxisome biogenesis	ATPase (putative)
YLR131C	ACE2______	-1.00	87243	87067	transcription	CUP1 regulator
YML008C	ERG6______	-1.39	4653459	3356818	sterol metabolism	S-adenosyl-methionine delta-24-sterol-c-methyltransferase
YMR233W	__________	-1.16	275058	237233	unknown	unknown; similar to Bud7p
YNL290W	RFC3______	+1.14	617839	706940	DNA replication	replication factor C 40 kD subunit
YOR030W	DFG16_____	+1.09	129414	141101	invasive growth	unknown
YPL008W	CHL1______	-1.16	171545	147662	mitosis	kinetochore protein, DEAH box family
YPR103W	PRE2______	+1.25	1319626	1647757	protein degradation	20S proteasome subunit (beta5)
YBR081C	SPT7______	+1.00	134517	134852	chromatin structure	histone acetyltransferase complex subunit
YCR019W	MAK32_____	-1.16	188658	161980	dsRNA virus propagation	unknown
YDL198C	YHM1______	-1.45	452188	312652	transport	mitochondrial carrier family
YDR317W	__________	-1.02	187340	183730	unknown	unknown
YER020W	GPA2______	-1.02	227251	222834	signaling	G protein alpha subunit
YGL008C	PMA1______	+1.14	4522491	5137388	H+ homeostasis	plasma membrane H+-ATPase
YGR119C	NUP57_____	+1.05	514209	539272	nuclear protein targeting	nuclear pore protein
YHR134W	__________	+1.19	259031	308698	unknown	unknown
YJL008C	CCT8______	-1.10	1211403	1096855	protein folding	cytoplasmic chaperonin complex
YKL007W	CAP1______	+1.34	685260	920223	cytoskeleton	actin capping protein subunit
YLL008W	DRS1______	-1.41	838793	595690	rRNA processing	RNA helicase
YLR313C	SPH1______	-1.08	106818	99178	bud site selection, bipolar	unknown; interacts with MAPKKs
YMR051C	__________	+1.24	3693100	4575480	unknown	unknown
YNL100W	__________	+1.06	506625	535751	unknown	unknown
YOL008W	__________	+1.04	285723	297289	unknown	unknown
YOR218C	__________	-1.13	536408	475576	unknown	unknown
YPL197C	__________	-1.01	991018	984440	unknown	unknown
YBL018C	POP8______	-1.46	300666	206559	tRNA processing	RNase P and RNase MRP subunit
YBR281C	__________	+1.04	134790	140737	unknown	unknown
YDL020C	RPN4______	+1.44	376328	543304	protein degradation, ubiquitin-mediated	26S proteasome subunit
YDR150W	NUM1______	+1.07	91674	98046	mitosis, nuclear migration	unknown
YDR519W	FKB2______	+1.86	422675	788246	protein folding	peptidyl-prolyl cis-trans isomerase
YFL015C	__________	-1.05	132992	127173	unknown	unknown
YGL212W	VAM7______	-1.31	154902	118531	vacuole biogenesis	unknown; regulator
YHL016C	DUR3______	-1.03	134199	130433	transport	urea permease
YIL110W	__________	-1.22	560291	457485	unknown	unknown
YJL213W	__________	-1.35	216083	160495	unknown	unknown; similar to Nocardia aryldialkylphosphatase
YKL209C	STE6______	+1.08	98949	106617	mating	a-factor exporter (ABC superfamily)
YLR143W	__________	-1.09	193009	177196	unknown	unknown; similar to Mmd1p
YNL302C	RPS19B____	-1.26	15578227	12378803	protein synthesis	ribosomal protein S19B
YOR042W	__________	+1.41	608865	858052	unknown	unknown
YPL020C	ULP1______	+1.23	255093	313921	protein degradation	Ubl (ubiquitin-like protein) - specific protease
YPR115W	__________	+1.13	174759	196934	unknown	unknown
YBR091C	MRS5______	+1.03	99336	102235	mitochondrial protein targeting	inner membrane carrier protein
YCR029C	RIM1______	+1.13	119177	134811
YDL210W	UGA4______	-1.03	117535	114664	transport	GABA-specific permease
YDR329C	PEX3______	+1.03	204598	210815	peroxisomal protein targeting	integral membrane protein
YER032W	FIR1______	+1.02	184902	188067	mRNA 3'-end processing	unknown
YGL020C	__________	-1.10	436187	396232	unknown	unknown
YGR131W	__________	-1.07	149236	138920	unknown	unknown
YHR144C	DCD1______	-1.01	344941	340167	pyrimidine metabolism	deoxycytidylate deaminase
YJL020C	__________	-1.20	295345	245537	unknown	unknown
YKL019W	RAM2______	+1.14	436330	495400	protein processing	protein farnesyltransferase, alpha subunit
YLL020C	__________	-1.20	175636	146081	unknown	unknown
YLR325C	RPL38_____	-1.60	10339518	6459290	protein synthesis	ribosomal protein L38
YNL112W	DBP2______	-1.41	6712890	4750566	mRNA decay	RNA helicase
YOL020W	TAT2______	-1.06	835423	787736	transport	tryptophan permease
YOR230W	WTM1______	+3.27	909775	2972529	meiosis	transcription factor
YPL209C	IPL1______	-1.04	214573	205439	mitosis, chromosome segregation	protein kinase
YBL030C	PET9______	+1.32	1607531	2115886	transport	mitochondrial ADP/ATP translocator
YBR293W	__________	+1.06	172589	183399	unknown	major facilitator superfamily
YDL032W	__________	-1.11	115379	103578	unknown	unknown
YDR162C	NBP2______	+1.24	226362	280083	unknown	interacts with Nap1p
YDR531W	__________	-1.17	428562	365856	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YFL025C	BST1______	+1.10	165166	181507	secretion	negative regulator of COPII vesicle formation
YGL224C	__________	+1.03	350202	359621	unknown	unknown
YHL028W	WSC4______	-1.70	280138	165248	cell wall integrity and stress response	unknown
YIL122W	__________	+1.30	176054	229003	unknown	unknown
YJR001W	__________	+1.44	500440	720560	unknown	major facilitator superfamily
YKL221W	__________	-1.04	125382	120877	unknown	unknown; similar to mammalian monocarboxylate
YLR155C	ASP3-1____	+17.50	148822	2604880	asparagine utilization	L-asparaginase II
YML029W	__________	+1.17	167432	196415	unknown	unknown
YMR257C	PET111____	-1.01	167760	166163	protein synthesis	translation activator of COX2
YNL314W	DAL82_____	-1.11	248214	222698	transcription	activator of allantoin catabolic genes
YOR054C	__________	-1.10	623102	565313	unknown	unknown
YPL032C	SVL3______	-1.08	196703	181830	unknown	unknown; styryl dye vacuolar localization
YPR127W	__________	+1.50	249344	372827	unknown	unknown; similar to auxin-induced protein PIR:S16390
YBR103W	SIF2______	-1.00	216338	215755	silencing (telomere)(putative)	unknown
YCR040W	MATALPHA1_	+1.01	108349	109747	transcription	alpha-specific gene activator
YDL222C	__________	-1.31	170061	130308	unknown	unknown; similar to Sur7p
YDR341C	__________	-1.01	1250164	1234128	protein synthesis	tRNA synthetase, arginine
YER043C	SAH1______	-1.08	3040369	2804960	methionine biosynthesis	S-adenosyl-L-homocysteine hydrolase
YGL032C	AGA2______	+2.42	143242	346138	mating	a-agglutinin binding subunit
YGR143W	SKN1______	-1.01	145263	143273	cell wall biogenesis	(1->6)-beta-glucan synthase subunit
YHR156C	__________	+1.03	179091	184137	unknown	unknown
YJL032W	__________	+1.25	243660	303822	unknown	unknown
YKL031W	__________	-1.30	137471	105731	unknown	unknown
YLL032C	__________	+1.14	273134	311404	unknown	unknown
YLR337C	VRP1______	+1.01	1032573	1038537	cytoskeleton	verprolin
YMR074C	__________	+2.21	934433	2065975	unknown	unknown
YNL124W	__________	-1.41	1398990	994810	unknown	unknown
YOL032W	__________	+1.18	242771	286231	unknown	unknown
YOR242C	SSP2______	-1.14	237424	208992	sporulation	unknown; similar to class II family of aminoacyl-tRNA synthetases
YPL221W	BOP1______	+3.02	324904	981046	unknown	unknown; bypass of PAM1
YBL042C	FUI1______	-1.08	306754	282777	transport	uridine permease
YDL044C	MTF2______	+1.08	93264	101131	mRNA splicing, mitochondrial	unknown
YDR172W	SUP35_____	+1.08	1034726	1115004	protein synthesis	translation release factor
YDR543C	__________	+1.02	124484	126922	unknown	unknown; similar to other subtelomerically-encoded proteins
YFL035C	__________	+1.13	402364	454341
YGL235W	__________	-1.16	121508	104331	unknown	unknown
YHL039W	__________	-1.08	559370	518543	unknown	unknown
YIL134W	FLX1______	-1.20	240190	200831	transport	FAD mitochondrial carrier
YJR012C	__________	+1.10	211866	233287	unknown	unknown
YKR008W	RSC4______	-1.03	299025	290607	chromatin structure	chromatin remodeling complex subunit
YLR165C	__________	+1.16	170366	196885	unknown	unknown
YMR269W	__________	-1.61	461333	286251	unknown	unknown
YNL326C	__________	+1.23	257418	317006	unknown	unknown; similar to Akr1p and Ydr126p
YOR066W	__________	-1.07	246761	230443	unknown	unknown
YPL044C	__________	-1.70	296679	175031	unknown	unknown
YBR114W	RAD16_____	+1.18	165230	194518	DNA repair, nucleotide excision	NEF4 component
YCR052W	RSC6______	-1.13	374332	331797	chromatin structure	chromatin remodeling complex subunit
YDL234C	GYP7______	+2.11	169321	356756	vacuole inheritance	GTPase-activating protein for Ypt7p
YDR353W	TRR1______	+1.26	1368972	1724249	pyrimidine metabolism	thioredoxin reductase
YER053C	__________	+1.27	262602	334464	unknown	unknown; similar to C. elegans mitochondrial phosphate
YGL044C	RNA15_____	-1.06	382448	359529	mRNA 3'-end processing	cleavage/polyadenylation factor CF I component
YGR155W	CYS4______	+1.12	2000104	2230121	methionine biosynthesis	cystathionine beta-synthase
YHR168W	__________	-1.35	221606	164057	unknown	unknown
YJL045W	__________	-1.33	233999	175539	unknown	unknown; similar to succinate dehydrogenase flavoprotein
YKL042W	SPC42_____	-1.06	103205	97648	cytoskeleton	spindle pole body component
YLL044W	__________	-1.13	6095167	5410135	unknown	unknown
YLR349W	__________	-1.14	196043	172530	unknown	unknown
YNL136W	__________	+1.05	364757	384019	unknown	unknown; similar to mature-parasite-infected
YOL044W	PEX15_____	+1.08	193717	209215	peroxisome biogenesis	integral membrane protein
YOR254C	SEC63_____	+1.20	1500546	1808112	secretion	ER protein translocation subcomplex subunit
YPL233W	__________	+1.20	249536	299578	unknown	unknown
YBL054W	__________	+1.02	145159	147366	unknown	unknown
YDL056W	MBP1______	+1.03	246867	254549	cell cycle	transcription factor
YDR183W	PLP1______	-1.05	223486	212976	unknown	unknown; similar to phosducin
YFL047W	__________	+1.01	207456	209077	unknown	unknown; similar to Rga2p
YGL247W	__________	+1.14	193385	221316	unknown	unknown
YHL050C	__________	+1.79	1454585	2600816	unknown	unknown; similar to other subtelomerically-encoded proteins
YIL146C	ECM37_____	+1.07	188155	201050	cell wall biogenesis	unknown
YJR024C	__________	+1.24	544535	673767	unknown	unknown
YKR020W	__________	-1.02	243303	239039	unknown	unknown
YLR177W	__________	+1.28	702080	901730	unknown	unknown
YML048W	GSF2______	+1.05	311487	326421	glucose repression	unknown
YMR281W	GPI12_____	-1.07	309405	290168	protein processing (putative)	N-acetylglucosaminylphosphatidylinositol de-N-acetylase
YNL338W	__________	-1.53	426341	277979	unknown	unknown
YOR078W	__________	-1.09	1403468	1284062	unknown	unknown
YPL056C	__________	-1.09	198216	181391	unknown	unknown
YPR149W	NCE102____	-1.75	729151	415837	secretion, non-classical	unknown
YBR126C	TPS1______	+1.78	564364	1003937	trehalose metabolism	trehalose-6-phosphate synthas
YCR064C	__________	+1.12	125811	140360	unknown	unknown
YDL246C	__________	+1.31	153229	201266	unknown	unknown; similar to Sor1p (SOR1 and YDL246C code for nearly
YDR365C	__________	+1.04	859860	897014	unknown	unknown
YER063W	THO1______	+1.12	721935	806577	transcription (putative)	unknown
YGL056C	SDS23_____	+1.08	497373	538713	unknown	unknown; similar to S. pombe sds23
YGR163W	GTR2______	+1.11	484467	539804	signaling (putative)	small GTPase (putative)
YHR180W	__________	+1.33	166368	221720	unknown	unknown
YJL057C	IKS1______	+1.24	196459	244385	signaling (putative)	protein kinase
YKL054C	VID31_____	-1.09	691203	633308	vacuolar protein targeting (putative)	unknown
YLL056C	__________	-1.02	748595	733134	unknown	unknown; similar to Y. pseudotuberculosis CDP-3,
YLR361C	__________	+1.05	225308	237200	unknown	unknown
YMR096W	SNZ1______	+1.64	254453	417170	unknown	unknown; induced in stationary phase
YNL148C	ALF1______	-1.00	131286	130958	protein folding	alpha-tubulin foldin
YOL054W	__________	+1.30	361761	468862	unknown	unknown
YOR266W	PNT1______	+1.04	361451	374695	pentamidine resistance	unknown
YPL245W	__________	-1.01	544828	539183	unknown	unknown
YBL066C	SEF1______	+1.10	105961	116647	transcription	(putative) transcription factor
YDL068W	__________	+1.09	140263	152717	unknown	unknown
YDR195W	REF2______	-1.02	167781	164813	mRNA 3'-end processing	unknown
YFL059W	SNZ3______	+1.96	224088	439715	unknown	unknown; induced in stationary phase
YGL259W	YPS5______	-1.38	248868	179710	protein degradation	GPI-anchored aspartic protease
YHR010W	RPL27A____	-1.01	15394892	15220012	protein synthesis	ribosomal protein L27A

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YIL157C	__________	-1.04	563049	543857	unknown	unknown
YJR035W	RAD26_____	-1.10	463183	420335	DNA repair	putative helicase
YKR032W	__________	-1.19	181670	153166	unknown	unknown
YLR189C	UGT51_____	+1.10	149659	165097	sterol metabolism	UDP-glycosyltransferases
YML059C	__________	-1.08	490564	454523	unknown	unknown
YNR011C	PRP2______	-1.06	374057	352671	mRNA splicing	RNA helicase, putative
YOR090C	PTC5______	+1.15	289268	333924	unknown	protein phosphatase type 2C
YPL066W	__________	+2.07	462100	954426	unknown	unknown
YBR138C	HDR1______	+1.24	157650	194737	meiosis	unknown
YCR075C	ERS1______	-1.18	213812	180798	secretion (putative)	unknown; suppresses erd1 mutation
YDR010C	__________	-1.12	114523	102133	unknown	unknown
YDR375C	BCS1______	+1.09	212377	230656	respiration	cyt. c iron-sulfur subunit expression
YER072W	NRF1______	-1.83	2350052	1285662	signaling, polarized growth (putative)	negative regulator of Cdc42p
YGL068W	__________	-1.32	939389	712879	unknown	unknown; similar to ribosomal proteins
YGR175C	ERG1______	+1.47	2115126	3103465	sterol metabolism	squalene monooxygenase
YHR192W	__________	+1.28	517471	661888	unknown	unknown
YJL069C	__________	-1.13	516928	455511	unknown	unknown
YKL066W	__________	-1.00	128511	127890	unknown	unknown
YLR001C	__________	+1.01	728262	734413	unknown	unknown
YLR373C	VID22_____	+1.14	184073	210673	vacolar protein targeting (putative)	unknown
YMR108W	ILV2______	+1.97	872294	1715512	isoleucine and valine biosynthesis	acetolactate synthase
YNL160W	YGP1______	+7.95	332253	2641212	diauxic shift	unknown; response to nutrient limitation
YOL066C	RIB2______	+1.16	238059	276882	riboflavin biosynthesis	DRAP deaminase
YOR278W	HEM4______	+1.15	332749	381812	heme biosynthesis	uroporphyrinogen III synthase
YPL256C	CLN2______	+2.21	607599	1343239	cell cycle	G1/S cyclin
YMR323W	__________	-1.36	236095	173238	unknown	unknown; similar to enolases (phosphopyruvate hydratase)
YBL078C	AUT7______	+1.75	150242	263513	autophagy	microtubule-associated protein (putative)
YDL080C	THI3______	-1.08	145084	134929	thiamine metabolism	alpha-ketoisocaproate carboxylase
YDR207C	UME6______	-1.31	245066	187675	meiosis	transcription factor
YFR003C	__________	+1.05	315583	331667	unknown	unknown
YGR008C	STF2______	+2.20	284950	627372	ATP synthesis	ATPase stabilizing factor
YIL169C	__________	+1.01	1054814	1060547	unknown	unknown
YJR047C	ANB1______	-2.11	11375189	5395207	protein synthesis	translation initiation factor eIF5A
YKR044W	__________	-1.04	527253	504926	unknown	unknown
YLR201C	__________	+1.37	290376	398492	unknown	unknown
YML071C	__________	+1.09	320970	349737	unknown	unknown
YMR303C	ADH2______	+1.04	15585444	16246175	glycolysis	alcohol dehydrogenase II
YNR023W	SNF12_____	-1.02	409901	400333	transcription	component of SWI/SNF global activator complex
YOR102W	__________	-1.06	749838	709136	unknown	unknown
YPL078C	ATP4______	+1.69	1292947	2189343	ATP synthesis	ATPase; F0-ATP synthase subunit 4
YPR169W	__________	-1.06	1547893	1464179	unknown	unknown
YBR150C	TBS1______	-1.12	223785	199432	drug resistance (putative)	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YDR022C	CIS1______	+1.02	135445	138133	microtubule assembly	cik1 suppressor
YDR387C	__________	+1.21	172246	208797	unknown	unknown; similar to Itr1p and Itr2p
YER084W	__________	-1.26	127358	101053	unknown	unknown
YGL080W	__________	-1.03	269461	261104	unknown	unknown
YGR187C	HGH1______	-1.16	876295	754579	unknown	unknown; similar to human Hmg1p and Hmg2p
YHR204W	__________	-1.07	367871	343502	unknown	unknown; similar to alpha-mannosidase and other glycosyl
YJL081C	ARP4______	+1.12	487261	544813	cytoskeleton	actin-related protein
YKL078W	__________	-1.55	286209	184886	unknown	putative RNA helicase
YLR013W	GAT3______	-1.14	131080	114628	transcription (putative)	DNA binding protein, GATA family
YLR385C	__________	-1.00	94586	94512	unknown	unknown
YNL172W	APC1______	-1.02	108882	106881	mitosis	anaphase-promoting complex subunit
YOL078W	__________	-1.07	154555	144354	unknown	unknown
YOR290C	SNF2______	+1.13	615463	693127	transcription	component of SWI/SNF global activator complex
YPL266W	DIM1______	-1.42	1329931	935036	rRNA processing, 18S	dimethyladenosine transferase
YBL090W	MRP21_____	-1.16	323643	280112	protein synthesis	ribosomal protein, mitochondrial
YDL092W	SRP14_____	-1.17	585717	501349	secretion	signal recognition particle subunit
YDR215C	__________	-1.12	131557	117225	unknown	unknown
YFR015C	GSY1______	+1.05	149459	156327	glycogen metabolism	glycogen synthase
YGR020C	VMA7______	+1.06	693223	736275	vacuolar acidification	vacuolar H+-ATPase V1 domain 14 kDa subunit
YHR033W	__________	+1.04	165110	171884	unknown	unknown; similar to Pro1p
YIR003W	__________	-1.11	310746	280807	unknown	unknown; similar to E. coli and Bacillus subtilis MinD, has
YJR059W	PTK2______	+1.12	288675	322184	polyamine transport	ser/thr protein kinase
YKR056W	RNC1______	+1.04	553116	572729	unknown	endo-exonuclease
YLR213C	CRR1______	-1.33	231702	174485	unknown	unknown; sporulation specific, related to Crh1p
YML083C	__________	-1.60	260364	162774	unknown	unknown
YMR313C	__________	+1.14	511043	581541	unknown	unknown
YNR035C	ARC35_____	+1.33	957285	1268478	cytoskeleton	cortical actin patch integrity
YOR114W	__________	+1.47	292941	431153	unknown	unknown
YPL090C	RPS6A_____	+1.13	15744689	17782855	protein synthesis	ribosomal protein S6A
YPR181C	SEC23_____	-1.01	598277	594241	secretion	vesicle coat component
YBR162C	__________	+1.89	3129914	5916639	unknown	unknown; similar to Aga1p
YCR098C	GIT1______	+1.05	181298	190118	unknown	unknown; similar to phosphate transporter
YDR034C	LYS14_____	+1.11	281718	312414	lysine biosynthesis	transcription factor
YDR399W	HPT1______	-1.62	1693358	1046460	purine biosynthesis	hypoxanthine guanine phosphoribosyl transferase
YER094C	PUP3______	+1.07	1044637	1122430	protein degradation	20S proteasome subunit (beta3
YGL092W	NUP145____	+1.06	331709	352610	nuclear protein targeting	nuclear pore protein
YGR199W	PMT6______	+1.09	358800	390660	protein glycosylation	putative O-mannosyltransferase
YJL093C	TOK1______	+1.23	230140	282256	transport	outward-rectifier potassium channel
YKL090W	__________	+1.07	214322	228676	unknown	unknown
YLR025W	SNF7______	-1.10	491642	445123	glucose derepression	unknown
YLR397C	AFG2______	-1.12	258591	230153	unknown	(putative) AAA ATPase
YMR131C	RSA2______	-1.22	997210	820667	ribosome biogenesis	unknown
YNL184C	__________	-1.09	183432	168069	unknown	unknown
YOL090W	MSH2______	+1.26	555092	701296	DNA repair	MutS homolog; mismatch repair
YOR301W	RAX1______	-1.11	189224	171236	cell polarity (putative)	unknown
YPL278C	__________	+1.26	170304	215313	unknown	unknown
YAL010C	MDM10_____	+1.01	136551	137957	mitochondrial biogenesis	(putative) component of actin binding protein complex
YBR174C	__________	-1.07	118693	111211	unknown	unknown
YCRX04W	__________	-1.29	318538	247263
YDR045C	RPC11_____	-1.46	399002	272751	transcription	RNA polymerase III subunit C11
YDR412W	__________	-2.29	625992	273194	unknown	unknown
YER107C	GLE2______	-1.61	462539	287223	nuclear protein targeting	nuclear pore protein
YGL105W	ARC1______	-1.10	1799798	1641404	tRNA aminoacylation	G4 nucleic acid binding protein
YGR212W	__________	+1.11	136627	151415	unknown	unknown
YIL009W	FAA3______	-1.45	624045	430634	fatty acid metabolism	acyl CoA synthase
YJL106W	IME2______	+1.02	141639	144570	signaling, meiosis pathway	serine/threonine protein kinase
YKL102C	__________	+1.08	119750	129578	unknown	unknown; similar to potato lipoxygenase
YLR036C	__________	-1.02	153668	150836	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YLR410W	VIP1______	-1.05	108063	103109	unknown	unknown
YNL197C	WHI3______	+1.05	171990	179825	cell size	unknown
YOL103W	ITR2______	-1.04	524566	505968	transport	inositol permease
YOR313C	SPS4______	+1.26	210154	264020	sporulation	putative cell wall component
YPR008W	__________	+1.08	151047	163755	unknown	unknown; similar to Cup2p and Candida albicans
YBL101W	__________	-1.24	6001045	4834224	unknown	unknown
YCL008C	STP22_____	-1.15	207025	179896	vacuolar protein targeting	unknown; similar to Tsg101 tumor susceptibility gene
YDL105W	QRI2______	-1.14	152561	133626	unknown	unknown
YDR228C	PCF11_____	-1.42	887859	625841	mRNA 3'-end processing	cleavage/polyadenylation factor CF I component
YEL009C	GCN4______	-1.00	4214981	4209808	amino acid, purine biosynthesis	transcription factor
YFR028C	CDC14_____	-1.21	459030	379976	mitosis	protein phosphatase
YGR031W	__________	+1.03	206049	212711	unknown	unknown
YHR045W	__________	+1.05	353883	369887	unknown	unknown
YIR016W	__________	+1.07	460485	492318	unknown	unknown
YJR072C	__________	-1.05	593918	564107	unknown	unknown
YKR069W	MET1______	+1.13	173165	195661	methionine biosynthesis	siroheme synthase
YLR226W	BUR2______	+1.01	194616	197453	unknown	unknown
YML095C	RAD10_____	-1.15	242133	210320	DNA repair	ssDNA endonuclease
YNL009W	IDP3______	+1.15	140077	161489	TCA cycle	isocitrate dehydrogenase
YNR048W	__________	+1.24	235161	292476	unknown	unknown
YOR127W	RGA1______	+1.55	414598	642309	bud site selection	putative GTPase-activating protein (GAP) for Cdc42p or Rho1p
YPL103C	__________	+1.20	191177	228588	unknown	unknown
YPR194C	__________	-1.08	311831	287957	unknown	sexual differentiation protein family
YAL022C	FUN26_____	-1.05	225971	216169	unknown	unknown
YBR186W	PCH2______	-1.06	113160	107143	meiosis, checkpoint	unknown
YCRX16C	__________	-1.80	2287027	1267741
YDR057W	__________	+1.08	217868	234822	unknown	unknown
YDR424C	DYN2______	+1.05	293918	307749	cytoskeleton	dynein light chain
YER119C	__________	+1.20	214005	257065	unknown	unknown
YGL117W	__________	+1.06	172196	182293	unknown	unknown
YGR224W	AZR1______	-1.06	135973	128286	drug resistance (putative)	unknown; major facilitator superfamily
YIL020C	HIS6______	-1.74	568165	327041	histidine biosynthesis	Phosphoribosyl imidazolecarboxamide isomerase
YJL118W	__________	-1.10	115611	105463	unknown	unknown
YKL114C	APN1______	+1.20	481069	578849	DNA repair	apurinic/apyrimidinic endonuclease
YLR048W	RPS0B_____	-1.22	10573154	8640166	protein synthesis	ribosomal protein S0B
YLR420W	URA4______	-1.91	1685761	881298	pyrimidine biosynthesis	dihydrooratase
YMR154C	RIM13_____	+1.01	222962	226289	sporulation	proteolytic processing of Rim1p
YNL209W	SSB2______	+1.02	10393837	10626951	translation	cytosolic HSP70
YOL113W	SKM1______	+1.68	237443	397732	unknown	protein kinase
YOR325W	__________	-1.10	160828	145822	unknown	unknown
YPR020W	ATP20_____	+1.14	655322	744243	ATP synthesis	mitochondrial ATP synthase subunit
YBL113C	__________	+1.78	1445312	2577850	unknown	unknown
YCL021W	__________	-1.79	1145874	638392
YDL117W	CYK3______	+1.15	213396	244971	cytokinesis (putative)	unknown
YEL020C	__________	+1.14	162882	185125	unknown	unknown; similar to oxalyl-CoA decarboxylase from
YFR037C	RSC8______	-1.15	888720	775302	chromatin structure	chromatin remodeling complex subunit
YHR056C	__________	-1.37	584242	424991	unknown	putative transcriptional regulator
YIR025W	__________	-1.06	263847	248676	unknown	unknown
YJR085C	__________	+1.52	729734	1110543	unknown	unknown
YKR081C	__________	-1.22	1378668	1133617	unknown	unknown
YLR236C	__________	-1.18	137945	116993	unknown	unknown
YML105C	SEC65_____	-1.12	950521	845072	secretion	signal recognition particle subunit
YNL021W	HDA1______	-1.07	184662	172747	chromatin structure	histone deacetylase
YNR060W	FRE4______	-1.57	232624	148568	unknown	unknown; similar to ferric reductases Fre1p and Fre2p
YOR139C	__________	-1.35	164770	122076	unknown	unknown
YPL115C	BEM3______	+1.15	394658	454373	bud emergence	GTPase-activating protein for Cdc42p
YAL033W	POP5______	-1.11	215239	193394	tRNA processing	RNase P and RNase MRP subunit
YBR198C	TAF90_____	-1.05	276785	264747	transcription	TFIID 90 kD subunit
YDR069C	DOA4______	+1.20	232675	278395	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YDR436W	PPZ2______	+1.16	174332	202125	stress response	ser/thr phosphatase
YER130C	__________	+1.74	276685	482259	unknown	unknown
YGL129C	__________	-1.02	94983	93326	unknown	unknown; similar to crayfish 1,3-beta-D-glucan-binding
YGR236C	__________	-1.01	156671	155053	unknown	unknown
YIL032C	__________	-1.49	186437	125243	unknown	unknown
YJL130C	URA2______	+1.10	4033861	4429716	pyrimidine biosynthesis	carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase
YKL126W	YPK1______	+1.59	372164	591149	unknown	protein kinase
YLR060W	FRS1______	-1.01	1143344	1127964	protein synthesis	tRNA synthetase, phenylalanyl, subunit
YLR430W	SEN1______	+1.10	666358	732623	tRNA splicing	RNA helicase, putative
YMR165C	SMP2______	+1.01	112549	113640	respiration; plasmid maintenance	unknown
YNL221C	POP1______	+1.11	514785	570834	rRNA and tRNA processing	RNase P and RNase MRP subunit
YOL125W	__________	-1.07	435109	407926	unknown	unknown
YOR337W	TEA1______	+1.13	140831	158962	transcription	Ty1 enhancer activator
YPR032W	SRO7______	-1.03	120531	116466	signaling (putative)	suppresses rho3 mutant
YBR012C	__________	-1.37	191818	139937	unknown	unknown
YCL033C	__________	+1.60	311808	500167	unknown	unknown; similar to Neisseria pilin
YDL129W	__________	-1.11	152381	136670	unknown	unknown
YDR252W	BTT1______	+1.03	118056	121201	transcription	negative regulator of RNA polymerase II
YEL032W	MCM3______	-1.04	106298	102570	DNA replication	MCM initiator complex
YFR049W	YMR31_____	+1.22	309295	377035	protein synthesis	ribosomal protein, mitochondrial
YGR050C	__________	-1.21	146543	120966	unknown	unknown
YHR066W	SSF1______	-1.14	969886	854120	mating (putative)	unknown
YIR037W	HYR1______	+1.32	767818	1010986	oxidative stress response	glutathione peroxidase
YJR096W	__________	+1.41	173463	244333	unknown	unknown; similar to aldolase reductase
YKR093W	PTR2______	+1.54	393357	607143	transport	small peptide permease
YLR248W	RCK2______	+1.19	380752	452126	unknown	Ca/calmodulin-dependent protein kinase
YNL033W	__________	-1.22	144849	118829	unknown	unknown
YNR072W	HXT17_____	-1.01	165145	162812	transport	hexose permease
YOR149C	SMP3______	+1.17	209568	245014	plasmid maintenance	integral membrane, protein kinase C pathway protein
YPL127C	HHO1______	+1.09	983638	1071112	chromatin structure	histone H1
YBR210W	__________	-1.01	245764	244052	unknown	unknown
YDR081C	PDC2______	+1.04	170870	176868	glycolysis	regulator of pyruvate decarboxylase genes
YDR448W	ADA2______	+1.08	135325	145719	chromatin structure	histone acetyltransferase complex subunit
YER140W	__________	+1.08	177852	191940	unknown	unknown
YGL141W	HUL5______	-1.02	95343	93895	protein degradation, ubiquitin mediated	ubiquitin-protein ligase (E3)
YGR248W	SOL4______	-1.09	135987	124839	unknown	unknown; similar to Sol3p
YIL044C	AGE2______	+1.05	438028	460929	secretion	GTPase activating protein for ARFs
YJL142C	__________	+1.27	269178	342341	unknown	unknown
YKL138C	MRPL31____	-1.11	297822	267456	protein synthesis	ribosomal protein, mitochondrial L31
YLR072W	__________	+1.00	128542	128611	unknown	unknown
YLR442C	SIR3______	+1.11	397292	440968	silencing	nuclear protein, reulator of silencing at HML, HMR, telomeres

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YNL233W	BNI4______	+1.01	309500	312212	cytokinesis	may link chitin synthase to septins
YOL137W	__________	+1.01	276784	278385	unknown	major facilitator superfamily
YOR347C	PYK2______	+1.00	499946	501985	glycolysis	pyruvate kinase
YPR044C	__________	+1.04	15799800	16462725	unknown	unknown
YBR022W	__________	+1.05	259118	270869	unknown	unknown
YCL045C	__________	+1.08	641943	694936	unknown	unknown
YDL139C	SCM3______	+1.05	161467	169357	mitosis, chromosome segregation (putative)	unknown
YEL044W	__________	+1.16	196905	227500	unknown	unknown
YGR062C	COX18_____	+1.14	171356	195876	respiration	required for activity of mitochondrial cytochrome oxidase
YHR077C	NMD2______	-1.03	407987	396699	mRNA decay, nonsense-mediated	Nam7p/Upf1p-interacting protein
YJR108W	ABM1______	+1.07	122253	131163	cytoskeleton (putative)	unknown
YKR105C	__________	-1.00	190988	190855	unknown	major facilitator superfamily
YLR257W	__________	+1.89	688614	1304446	unknown	unknown
YML128C	__________	+1.56	192856	300949	unknown	unknown
YNL043C	__________	+1.34	821780	1101544	unknown	unknown
YOR161C	__________	-1.48	287897	194744	unknown	unknown
YPL139C	UME1______	-1.08	279372	259812	meiosis	transcription factor
YBR222C	FAT2______	+1.74	158693	276143	transport	peroxisomal (putative) fatty acid transporter
YDR093W	__________	+1.32	1691486	2234168	unknown	unknown; similar to members of Drs2p family of P-type
YDR460W	TFB3______	+1.32	224342	297015	transcription	TFIIH 38 kD subunit
YER150W	SPI1______	+1.31	209332	273526	unknown	unknown; similar to Sed1p; induced in stationary phase
YGL153W	PEX14_____	+1.03	190208	195860	peroxisomal protein targeting	peroxisomal import machinery component
YGR260W	TNA1______	-1.06	838773	791683	transport	nicotinic acid permease
YIL056W	__________	+1.17	287231	335882	unknown	unknown
YJL154C	VPS35_____	+1.23	318380	390174	vacuolar protein targeting	peripheral membrane protein
YKL150W	MCR1______	+1.32	587260	774883	electron carrier	cytochrome-b5 reductase
YLR084C	RAX2______	+1.19	321920	383109	cell polarity (putative)	unknown
YLR454W	__________	+1.03	1943582	2003780	unknown	unknown
YMR187C	__________	+1.13	194819	219181	unknown	unknown
YNL245C	__________	+1.16	369784	429031	unknown	unknown
YOL149W	DCP1______	-1.04	713920	684242	mRNA decay	decapping enzyme
YOR359W	__________	-1.13	159637	141395	unknown	unknown
YPR056W	TFB4______	-1.02	307296	301375	transcription	TFIIH 37 kD subunit
YBR034C	HMT1______	-1.05	937789	889388	protein processing	arginine methyltransferase
YCL057W	PRD1______	+1.09	527636	572560	protein degradation	proteinase yscD
YDL151C	__________	-1.12	270199	242213	unknown	unknown
YDR272W	GLO2______	+1.20	541824	650328	methylglyoxal resistance	glyoxalase II
YEL056W	HAT2______	-1.02	391629	384736	chromatin structure	histone acetyltransferase complex subunit
YGR074W	SMD1______	-1.10	334074	302398	mRNA splicing	U6 snRNP protein
YHR088W	RPF1______	-1.19	733207	615080	unknown	unknown
YJR120W	__________	-1.10	139615	127072	unknown	unknown
YLR268W	SEC22_____	+1.04	746479	776239	secretion	ER-to-Golgi v-SNARE
YMR007W	__________	+2.14	154475	330917	unknown	unknown
YOR173W	__________	+1.07	121548	129499	unknown	unknown
YPL151C	PRP46_____	+1.10	317409	349695	mRNA splicing	unknown
YAL067C	SEO1______	+1.03	91302	94487	drug resistance	suppressor of sulfoxyde ethionine
YBR234C	ARC40_____	+1.05	105568	110984	cytoskeleton	Arp2/3 complex subunit
YDR103W	STE5______	+1.10	195540	215114	signaling, pheromone pathway	scaffold protein for MAP kinase cascade
YDR472W	TRS31_____	+1.02	470955	480879	secretion (putative)	transport protein particle (TRAPP) subunit, 31 kD
YER160C	__________	-1.17	158299	135814	unknown	unknown
YGL165C	__________	+1.83	312278	571549	unknown	unknown
YGR272C	__________	-1.40	585211	418081	unknown	unknown
YIL067C	__________	+1.14	272948	311219	unknown	unknown
YJL166W	QCR8______	+1.46	1214153	1777915	oxidative phosphorylation	ubiquinol--cytochrome-c reductase subunit VIII
YKL162C	__________	+1.12	149058	166211	unknown	unknown
YLR096W	KIN2______	-1.25	657174	526193	unknown	protein kinase
YLR466W	YRF1-4____	+2.02	1886005	3811407	unknown	Y' helicase (subtelomerically-encoded)
YMR198W	CIK1______	+1.14	186046	212147	cytoskeleton	spindle pole body associated protein
YNL257C	SIP3______	+1.02	123058	125352	glucose derepression	(putative) transcriptional activator
YOL161C	__________	+1.69	322312	543820	unknown	unknown; similar to PAU1 family
YOR371C	__________	+1.17	178618	208262	unknown	unknown
YPR068C	HOS1______	+1.00	115274	115667	unknown	unknown; similar to Hda1p, Rpd3p, Hos2p, and Hos3p
YBR046C	ZTA1______	+1.25	118064	147419	unknown	putative quinone oxidoreductase
YCL069W	__________	-1.02	124985	122201	unknown	major facilitator superfamily
YDL163W	__________	-1.14	104390	91642	unknown	unknown
YDR284C	DPP1______	+1.41	276773	389074	phospholipid metabolism	diacylglycerol pyrophosphate phosphatase
YEL067C	__________	+1.26	134840	169276	unknown	unknown
YGR086C	__________	+1.50	3047490	4575187	unknown	unknown
YHR100C	__________	-1.16	506140	436061	unknown	unknown
YJR132W	NMD5______	-1.05	498501	473421	unknown	Nam7p/Upf1p-interacting protein
YLR280C	__________	-1.03	103845	100557	unknown	unknown
YMR019W	STB4______	-1.00	182855	182233	transcription	Sin3-binding protein
YNL065W	__________	-1.22	278580	229162	unknown	major facilitator superfamily
YOR185C	GSP2______	-1.21	2490755	2058160	nuclear organization	GTPase; ran homolog
YPL163C	SVS1______	+4.57	637647	2910912	vanadate resistance	unknown
YAR019C	CDC15_____	-1.01	211565	208930	cell cycle	protein kinase
YBR246W	__________	-1.07	234216	219625	unknown	unknown
YDR115W	__________	-1.10	220836	200107	unknown	unknown; similar to prokaryotic L34 ribosomal protein
YDR484W	SAC2______	+1.20	201133	241425	cytoskeleton	suppressor of actin mutation
YER171W	RAD3______	-1.00	268328	267660	transcription; DNA repair	TFIIH subunit
YGL177W	__________	-1.03	145311	140435	unknown	unknown
YGR284C	ERV29_____	+2.08	873755	1813885	secretion (putative)	unknown; transport vesicle protein
YIL077C	__________	+1.19	371718	443262	unknown	unknown
YJL178C	__________	-1.05	1138051	1082062	unknown	unknown
YKL174C	__________	+1.21	321533	389348	unknown	unknown; similar to Hnm1p and other permeases
YLR108C	__________	-1.04	129959	124646	unknown	unknown
YMR210W	__________	+1.13	943278	1064714	unknown	unknown
YNL269W	__________	+1.43	218447	311537	unknown	unknown
YOR007C	SGT2______	+1.03	2958635	3052667	unknown	unknown
YOR383C	__________	+1.97	636992	1257361	unknown	unknown
YPR080W	TEF1______	+1.16	15958128	18493988	protein synthesis	translation elongation factor EF-1 alph
YBR058C	UBP14_____	-1.31	461333	352980	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YCLX08C	__________	-1.10	126851	115815
YDL175C	__________	+1.11	211103	234835	unknown	unknown
YDR296W	MHR1______	+1.05	205589	216144	recombination, mitochondrial	unknown
YER001W	MNN1______	+1.46	266428	388992	protein glycosylation	alpha-1,3-mannosyltransferase
YGR098C	ESP1______	-1.08	108866	101200	cytoskeleton	spindle pole body duplication
YHR112C	__________	+1.72	350367	603411	unknown	unknown; similar to cystathionine gamma-synthase Str2p
YJR144W	MGM101____	+1.44	1025539	1474012	mitochondrial genome maintenance	(putative) nucleic acid interactor
YLR291C	GCD7______	-1.03	674938	658142	protein synthesis	translation initiation factor eIF2b subunit

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YMR031C	__________	-1.20	328266	272863	unknown	unknown
YNL077W	__________	+1.11	270621	300382	unknown	unknown; similar to E. coli DnaJ and other DnaJ-like proteins
YOR195W	SLK19_____	+1.01	785248	794512	mitosis	unknown; synthetic lethal with kar3
YPL175W	SPT14_____	+1.10	318541	351200	protein processing	N-acetylglucosaminyltransferase (GPI anchor synthesis)
YAR042W	SWH1______	-1.21	126938	104557	unknown	unknown; similar to mammalian oxysterol-binding protein
YBR258C	__________	+1.08	198999	215304	unknown	unknown
YDR127W	ARO1______	-1.02	1190257	1163366	aromatic amino acid biosynthesis	pentafunctional enzyme
YDR496C	__________	-1.09	722284	664419	unknown	unknown
YER182W	__________	+1.18	288846	341771	unknown	unknown
YGL189C	RPS26A____	+1.08	15418516	16601476	protein synthesis	ribosomal protein S26A
YGR296W	YRF1-3____	-1.06	474640	448886	unknown	Y' helicase (subtelomerically-encoded)
YIL088C	__________	+1.31	375016	491348	unknown	unknown; similar to members of the major facilitator
YJL190C	RPS22A____	-1.23	15588425	12631561	protein synthesis	ribosomal protein S22A
YKL186C	MTR2______	+1.22	916000	1118755	mRNA export	unknown
YLR120C	YPS1______	+1.69	229482	388648	protein processing	GPI-anchored aspartic protease
YMR222C	__________	+1.03	317897	326717	unknown	unknown; similar to S. pombe DFR1, dihydrofolate reductase
YNL281W	HCH1______	+1.24	1032968	1277774	stress response (putative)	unknown; overexpression suppresses hsp82 mutation
YOR019W	__________	-1.03	221537	215671	unknown	unknown
YPR092W	__________	-1.09	156173	142872	unknown	unknown
YBR070C	__________	+1.31	237715	312010	stress response	osmotolerance protein (putative)
YCR008W	SAT4______	+1.14	268376	305788	salt tolerance	protein kinase
YDL187C	__________	-1.03	119270	115705	unknown	unknown
YDR308C	SRB7______	-1.09	220380	201852	transcription	RNA polymerase II mediator subunit
YER011W	TIR1______	-1.00	1948841	1941939	stress response (putative)	cell wall protein
YHR124W	NDT80_____	-1.51	848094	559856	meiosis	transcription factor
YJR156C	THI11_____	+1.71	186363	319504	pyrimidine biosynthesis	thiamine regulated gene
YLR303W	MET17_____	+4.42	475139	2099911	methionine biosynthesis	O-acetylhomoserine sulfhydrylase
YMR042W	ARG80_____	+1.02	221711	225041	arginine metabolism	transcription factor
YNL089C	__________	+1.21	232115	281044	unknown	unknown
YOR207C	RET1______	-1.07	125156	116613	transcription	RNA polymerase III 130 kD subunit
YPL186C	__________	+1.08	144866	157004	unknown	unknown
YBL007C	SLA1______	-1.34	290055	216120	cytoskeleton	cortical actin assembly
YBR270C	__________	-1.13	137568	121257	unknown	unknown
YDL009C	__________	+1.10	206437	228094	unknown	unknown
YDR139C	RUB1______	-1.40	322137	230680	protein degradation	ubiquitin-like protein
YDR508C	GNP1______	-1.20	344477	287866	transport	glutamine permease
YFL007W	BLM3______	-1.32	237757	179709	drug resustance	unknown; major facilitator superfamily
YGL201C	MCM6______	+1.07	85644	91506	DNA replication	MCM initiator complex
YHL007C	STE20_____	+1.10	265858	293619	signaling, pheromone and pseudohyphal growth pathways	serine-threonine protein kinase
YJL202C	__________	-1.14	242223	212945	unknown	unknown
YKL198C	PTK1______	-1.02	134327	132201	polyamine transport	ser/thr protein kinase
YLR132C	__________	+1.04	113231	117466	unknown	unknown
YMR234W	RNH1______	+1.17	315265	367434	DNA replication (putative)	ribonuclease H
YNL291C	MID1______	+1.31	285934	373940	transport	Ca(2+) channel component
YOR031W	CRS5______	+1.20	229149	273953	Cu2+ ion homeostasis	metallothionein-like protein
YPL009C	__________	+1.02	109275	111737	unknown	unknown
YPR104C	FHL1______	+1.01	426235	429159	transcription	transcriptional activator
YBR082C	UBC4______	+1.05	1237952	1303255	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YCR020C	MAK31_____	-1.01	218486	217353	dsRNA virus propagation	unknown
YDL199C	__________	+1.04	123777	129300	unknown	unknown; similar to members of the sugar permease family
YDR318W	MCM21_____	+1.07	182284	195846	mitosis, chromosome segregation	unknown
YER021W	RPN3______	+1.10	944423	1042339	protein degradation	26S proteasome regulatory subunit
YGL009C	LEU1______	-1.04	246685	237801	leucine biosynthesis	3-isopropylmalate dehydratase
YGR120C	SEC35_____	+1.07	234243	250169	secretion	peripheral membrane protein required for ER to Golgi vesicle docking
YHR135C	YCK1______	-1.01	762449	758561	unknown	protein kinase
YJL009W	__________	-1.30	1232675	944630	unknown	unknown
YKL008C	LAC1______	+1.48	420574	623890	aging	unknown; similar to Lag1p, has 6 potential transmembrane
YLL009C	COX17_____	-1.09	296616	272900	respiration	cytochrome oxidase assembly
YLR314C	CDC3______	+1.09	363757	394869	cytokinesis	septin
YMR052W	FAR3______	+1.62	155669	252499	cell cycle, pheromone arrest	unknown
YNL101W	__________	+1.26	224173	283043	unknown	unknown; similar to members of a putative transporter family
YOL009C	MDM12_____	+1.12	240027	269661	mitochondrial inheritance	transmembrane protein
YOR219C	STE13_____	+1.35	306901	415816	mating	alpha-factor maturation
YPL198W	RPL7B_____	-1.30	5848246	4514347	protein synthesis	ribosomal protein L7B
YAR068W	__________	+1.02	165404	169472	unknown	unknown; similar to ICWP protein
YBL019W	APN2______	-1.01	105176	104360	DNA repair	exonuclease III homolog (AP endonuclease)
YBR282W	MRPL27____	-1.14	277728	243279	protein synthesis	ribosomal protein, mitochondrial L27
YDL021W	GPM2______	+1.65	117017	193372	glycolysis	phosphoglycerate mutase
YDR151C	CTH1______	-1.07	288743	268704	unknown	unknown
YDR520C	__________	+1.08	128358	138871	unknown	unknown; similar to glycosyl hydrolase
YFL016C	MDJ1______	+1.10	309302	341377	protein folding	chaperone; DnaJ homolog
YGL213C	SKI8______	-1.16	507300	438862	meiosis, recombination	antiviral RNA binding protein
YHL017W	__________	+1.01	361243	366464	unknown	unknown; similar to Ptm1p, member of major
YIL111W	COX5B_____	+1.30	212866	277647	oxidative phosphorylation	cytochrome-c oxidase subunit Vb
YJL214W	HXT8______	-1.24	142198	114803	transport	hexose permease
YKL210W	UBA1______	+1.06	302409	321986	protein degradation, ubiquitin-mediated	E1-like (ub.-activating) enzyme
YLR144C	ACF2______	+1.15	208614	239480	cytoskeleton	cortical actin assembly
YML018C	__________	-1.04	1114319	1071943	unknown	unknown
YMR245W	__________	+1.05	329132	346535	unknown	unknown
YNL303W	__________	-1.74	796018	457328	unknown	unknown
YOR043W	WHI2______	+1.04	552466	574576	cell size	unknown
YPL021W	ECM23_____	-1.07	121960	114175	cell wall biogenesis (putative)	unknown
YPR116W	__________	+1.03	117618	120824	unknown	unknown
YBR092C	PHO3______	-1.09	175354	161346	thiamine uptake	acid phosphatase, constitutive
YCR029C	__________	+1.10	782213	860164
YDL211C	__________	-1.12	174204	155723	unknown	unknown
YDR330W	__________	+1.06	227960	241406	unknown	unknown; similar to Undulin extracellular matrix
YER033C	ZRG8______	-1.22	170156	139576	unknown	unknown; zinc regulated
YGL021W	ALK1______	+1.01	103091	103969	DNA repair (putative)	DNA damage-responsive protein
YGR132C	PHB1______	-1.02	819631	804458	antiproliferative protein	unknown
YHR145C	__________	-1.76	5412544	3073712	unknown	unknown
YJL021C	__________	+1.25	478418	596111	unknown	unknown
YKL020C	SPT23_____	+1.04	355679	368838	transcription	transcription factor
YLL021W	SPA2______	-1.01	379437	377414	cytoskeleton	cortical actin patch component
YLR326W	__________	+1.30	185708	241536	unknown	unknown
YMR063W	RIM9______	+1.19	130360	155585	sporulation	stimulates expression of IME1
YNL113W	RPC19_____	-1.25	954420	762644	transcription	subunit common to RNA polymerases I and III
YOL021C	DIS3______	-1.03	94094	91686	RNA processing	3'-5' exoribonuclease complex subunit
YOR231W	MKK1______	-1.03	242617	236483	signaling, PKC1 pathway	MAP kinase (mitogen-activated protein kinase)
YPL210C	SRP72_____	-1.14	606001	533535	secretion	signal recognition particle subunit

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YBL031W	SHE1______	+1.01	117321	118457	unknown	overexpression is lethal
YBR294W	SUL1______	+1.18	133702	157365	transport	sulfate permease
YDL033C	__________	-1.04	152506	147232	unknown	unknown; similar to H. influenza protein HI0174
YDR163W	__________	+1.02	290522	295203	unknown	unknown
YDR532C	__________	-1.05	262467	248818	unknown	unknown
YFL026W	STE2______	+6.66	133788	890907	mating	alpha-factor receptor
YGL225W	GOG5______	+1.10	1552847	1703044	protein glycosylation	Golgi GDP-mannose transporter
YHL029C	__________	+1.11	268661	299072	unknown	unknown
YIL123W	SIM1______	+2.23	1368748	3057128	cell cycle	unknown
YJR002W	MPP10_____	-1.48	1273385	858259	rRNA processing	U3 snoRNP protein
YKL222C	__________	+1.04	184777	192252	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YLR156W	__________	+1.10	100424	110183	unknown	unknown
YML030W	__________	-1.21	475207	392302	unknown	unknown
YMR258C	__________	+1.10	234027	256562	unknown	unknown
YNL315C	ATP11_____	-1.23	451314	367524	ATP synthesis	F1F0-ATPase complex assembly protein
YOR055W	__________	-1.17	126068	107656	unknown	unknown
YPL033C	__________	-1.10	127188	115154	unknown	unknown
YPR128C	__________	+1.00	288158	288500	unknown	unknown; similar to ADP/ATP carrier proteins
YBR104W	YMC2______	-1.24	501028	405299	transport	mitochondrial carrier family
YCR041W	__________	-2.70	477322	176496	unknown	unknown
YDL223C	__________	+1.04	142672	148324	unknown	unknown
YDR342C	HXT7______	-1.12	2272536	2025438	transport	hexose permease
YER044C	MEI4______	-1.07	148276	139053	meiosis, chromosome pairing and recombination	unknown
YGL033W	HOP2______	-1.10	125671	114525	meiosis, chromosome pairing (putative)	unknown
YGR144W	THI4______	-1.10	126532	115065	thiamine biosynthesis	unknown; biosynthetic enzyme
YHR157W	REC104____	-1.03	143791	140284	meiosis, recombination	ds break formation complex subunit
YJL033W	HCA4______	-1.35	709952	527223	rRNA processing	RNA helicase
YKL032C	IXR1______	-1.02	1252051	1224416	transcription, oxygen-dependent	HMG-transcription factor
YLL033W	__________	+1.04	174731	181976	unknown	unknown
YLR338W	__________	-1.30	158565	121757	unknown	unknown
YMR075W	__________	+1.37	171600	234317	unknown	unknown
YNL125C	ESBP6_____	+1.09	239943	261769	unknown	unknown; similar to mammalian monocarboxylate transporters
YOL033W	MSE1______	+1.06	219372	231877	protein synthesis	tRNA synthetase, mitochondrial, glutamyl
YOR243C	__________	-1.06	713124	675031	unknown	unknown
YPL222W	__________	-1.06	110458	103876	unknown	unknown
YBL043W	ECM13_____	-1.02	120630	117849	cell wall biogenesis	unknown
YDL045C	FAD1______	+1.35	245895	332644	flavin biosynthesis	flavin adenine dinucleotide (FAD) synthetase
YDR173C	ARG82_____	+1.13	251008	283218	arginine metabolism	transcription factor
YDR544C	__________	-1.12	268594	239169	unknown	unknown
YFL036W	RPO41_____	-1.05	256989	245301	transcription	mitochondrial RNA polymerase
YGL236C	MTO1______	-1.09	194202	177748	salt tolerance (putative)	unknown; similar to E. coli gidA protein
YHL040C	ARN1______	-1.11	226484	204009	unknown	unknown; similar to subtelomerically-encoded proteins
YIL135C	__________	+1.05	101966	107505	unknown	unknown
YJR013W	__________	+1.15	285530	329493	unknown	unknown; similar to human angiotensin II type 1b
YKR009C	FOX2______	+1.10	116335	128306	fatty acid metabolism	peroxisomal beta-oxidation protein
YLR166C	SEC10_____	+1.10	206639	226312	secretion	exocyst complex subunit
YMR270C	RRN9______	-1.03	343938	332465	transcription	component of upstream activation factor complex (UAF)
YNL327W	EGT2______	-1.07	126245	118324	cell cycle	unknown
YOR067C	ALG8______	-1.02	566817	556385	protein glycosylation	glycosyltransferase
YPL045W	VPS16_____	-1.01	313682	311474	vacuolar protein targeting	component of sorting nexin complex
YPR138C	MEP3______	+1.21	482552	582138	transport	ammonia permease
YBR115C	LYS2______	-1.18	505999	430080	lysine biosynthesis	L-aminoadipate-semialdehyde dehydrogenase
YCR053W	THR4______	+1.02	1213475	1234256	threonine biosynthesis	threonine synthase
YDL235C	YPD1______	+1.23	569665	703268	signaling	two-component phosphorelay intermediate
YDR354W	TRP4______	+1.08	443552	480539	tryptophan biosynthesis	anthranilate phosphoribosyltransferase
YER054C	GIP2______	-1.17	8677102	7416597	glucose repression	(putative) Glc7p regulatory subunit
YGL045W	__________	-1.05	229894	218672	unknown	unknown
YGR156W	__________	+1.05	289274	302647	unknown	unknown
YHR169W	DBP8______	-1.21	616481	507872	unknown	RNA helicase
YJL046W	__________	-1.13	321639	283699	unknown	unknown; similar to lipoate-protein ligase A
YKL043W	PHD1______	-1.52	559039	368531	pseudohyphal growth	transcription factor
YLL045C	RPL8B_____	-1.06	14226479	13437313	protein synthesis	ribosomal protein L8B
YLR350W	__________	+1.65	577802	953297	unknown	unknown
YMR086W	__________	+1.24	148944	184645	unknown	unknown
YNL137C	NAM9______	+1.03	340365	351217	protein synthesis	ribosomal protein, mitochondrial S4 (putative)
YOL045W	__________	+1.19	485840	578781	unknown	protein kinase
YOR255W	__________	-1.11	134795	120931	unknown	unknown
YPL234C	TFP3______	+1.15	2239804	2568322	vacuolar acidification	vacuolar H+-ATPase V0 domain 17 KD subunit
YBL055C	__________	+1.25	196768	245837	unknown	unknown
YDL057W	__________	+1.30	131949	171323	unknown	unknown
YDR184C	ATC1______	-1.18	425121	358880	cell polarity	member of Bud6p complex
YFL048C	EMP47_____	+1.16	720686	838323	secretion	unknown; ER/Golgi membrane protein
YGL248W	PDE1______	+1.82	299243	545689	purine metabolism	3',5'-cyclic-nucleotide phosphodiesterase
YHR001W	__________	+1.18	459322	543116	unknown	unknown; similar to Ykr003p and members of the oxysterol-binding protein family
YIL147C	SLN1______	-1.07	1184936	1109128	signaling	two-component pathway
YJR025C	BNA1______	+1.23	395490	486517	nicotinic acid biosynthesis	3-hydroxyanthranilic acid dioxygenase
YKR021W	__________	+1.06	138503	146208	unknown	unknown
YLR178C	TFS1______	+2.12	226609	479987	cell cycle	suppresses cdc25 mutations
YML049C	RSE1______	+1.13	536935	606866	secretion and RNA splicing	unknown
YMR282C	AEP2______	+1.06	271473	286694	protein synthesis	translation of ATP9/OLI1 mRNA
YNL339C	YRF1-6____	+1.08	105766	114694	unknown	Y' helicase (subtelomerically-encoded)
YOR079C	ATX2______	+1.18	377216	445408	oxidative stress response	manganese-trafficking protein
YPL057C	SUR1______	+2.40	279455	670414	sphingolipid metabolism	suppresses cls2-2and rvs161
YPR150W	__________	-1.21	163274	134823	unknown	unknown
YBR127C	VMA2______	+1.19	528071	629180	vacuolar acidification	58 kD regulatory subunit
YCR065W	HCM1______	+1.24	123049	152803	transcription (putative)	forkhead family of DNA-binding proteins
YDL247W	__________	+1.24	86967	107634	unknown	unknown; similar to maltose permeases including Yjr160p,
YER064C	__________	+1.64	244775	400552	unknown	unknown; similar to members of a putative transporter family
YGL057C	__________	+1.27	200141	253484	unknown	unknown
YGR164W	__________	+1.12	192226	214840	unknown	unknown; similar to Hansenula wingei mitochondrial
YHR181W	__________	+1.10	565696	619452	unknown	unknown
YJL058C	__________	+1.22	168265	205358	unknown	unknown
YKL055C	OAR1______	-1.06	122729	115542	respiration	3-oxo-acyl-(acyl carrier protein) reductase
YLL057C	__________	-1.17	386559	329501	unknown	unknown; similar to C-terminal half E. coli dioxygenase
YLR362W	STE11_____	+1.19	144579	171577	signaling, pheromone and pseudohyphal growth pathways	MAPKKK (mitogen-activated protein kinase kinase kinase)
YMR097C	__________	+2.06	295703	608098	unknown	unknown
YNL149C	__________	-1.02	1247721	1224034	unknown	unknown
YOL055C	THI20_____	+1.11	234637	259979	thiamine metabolism (putative)	unknown; similar to bacterial transcription factors
YOR267C	__________	+1.27	886122	1128667	unknown	protein kinase
YPL246C	__________	+1.29	416162	538150	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YBL067C	UBP13_____	-1.00	140651	140617	protein degradation, ubiquitin-mediated	ubiquitin carboxyl-terminal hydrolase
YDL069C	CBS1______	+1.05	199344	208804	protein synthesis	translation activator of COB mRNA (mitochondria)
YDR196C	__________	+1.27	330630	421066	unknown	unknown
YFL060C	SNO3______	+1.27	158745	201228	unknown	unknown; induced in stationary phase
YGL260W	__________	+1.49	118543	177087	unknown	unknown; similar to Yir040p
YHR011W	DIA4______	+1.03	192605	198102	pseudohyphal growth (putative)	unknown
YIL158W	__________	-1.30	794038	609127	unknown	unknown; similar to Ykr100p
YJR036C	HUL4______	-1.05	143804	136678	protein degradation (putative)	ubiquitin-protein ligase (E3)
YKR033C	__________	-1.15	116825	101234	unknown	unknown; similar to Gat1p
YLR190W	__________	+1.48	272063	401685	unknown	unknown
YML060W	OGG1______	+1.01	337526	342483	DNA repair	8-oxoguanine DNA glycosylase
YMR293C	__________	+1.18	171171	201749	unknown	unknown; similar to amidase
YNR012W	URK1______	-1.15	428927	372173	pyrimidine metabolism	uridine kinase
YOR091W	__________	-1.06	804803	756048	unknown	unknown
YPL067C	__________	+1.24	166325	206767	unknown	unknown
YBR139W	__________	+1.55	244004	378067	unknown	unknown; similar to serine-type carboxypeptidases
YCR076C	__________	+1.35	217434	294027	unknown	unknown
YDR011W	SNQ2______	+1.04	864927	903493	4-nitroquinoline-N-oxide resistance	putative ATP-dependent permease
YDR376W	ARH1______	+1.33	281985	373788	unknown	unknown; similar to human adrenodoxin reductase
YER073W	ALD5______	+1.07	537505	575565	fermentation	mitochondrial aldehyde dehydrogenase
YGL069C	__________	-1.16	546282	471003	unknown	unknown
YGR176W	__________	-1.25	383641	306752	unknown	unknown
YHR193C	EGD2______	-1.11	8376525	7563454	protein synthesis (putative)	homolog of human nascent-polypeptide-associated complex subunit
YJL070C	__________	-1.14	227066	198848	unknown	unknown; similar to rat AMP deaminase 1
YKL067W	YNK1______	+1.39	946759	1317080	nucleotide metabolism	nucleoside diphosphate kinase
YLR002C	__________	-1.29	920396	714994	unknown	unknown
YLR374C	__________	-1.04	132392	127591	unknown	unknown
YMR109W	MYO5______	+1.18	169157	199695	cytoskeleton	myosin, class I
YNL161W	CBK1______	+1.00	439094	440955	cell wall biosynthesis (putative)	protein kinase
YOL067C	RTG1______	-1.24	159829	129150	organelle communication	h-l-h transcription factor
YOR279C	__________	+1.08	273697	295992	unknown	unknown
YPL257W	__________	+1.01	151807	152807	unknown	unknown
YBL079W	NUP170____	-1.10	466234	424801	nuclear protein targeting	nuclear pore protein
YDL081C	RPP1A_____	-1.57	12273013	7820000	protein synthesis	ribosomal protein P1A, acidic
YDR208W	MSS4______	-1.29	359963	279963	actin organization	Phosphatidylinositol 4-Phosphate Kinase
YFR004W	RPN11_____	+1.14	789022	901274	transcription	putative global regulator
YGR009C	SEC9______	+1.26	413081	518977	secretion	plasma membrane t-SNARE
YHR022C	__________	-1.10	210467	190809	unknown	unknown; similar to N-terminal region of ras-related
YIL170W	HXT12_____	-1.13	221783	195941	transport	hexose permease
YJR048W	CYC1______	-3.11	2381909	766136	oxidative phosphorylation	cytochrome-c isoform 1
YKR045C	__________	-1.39	882622	632814	unknown	unknown
YLR202C	__________	-1.03	172961	167918	unknown	unknown
YML072C	__________	+1.10	1694452	1871543	unknown	unknown
YMR304W	UBP15_____	+1.05	208135	219411	protein degradation, ubiquitin-mediated	putative deubiquitinating enzyme
YNR024W	__________	-1.15	356014	309048	unknown	unknown
YOR103C	OST2______	-1.06	788764	744733	protein glycosylation	oligosaccharyltransferase complex subunit
YPL079W	RPL21B____	-1.33	15309293	11504593	protein synthesis	ribosomal protein L21B
YPR170C	__________	-1.18	723657	615106	unknown	unknown
YBR151W	APD1______	+1.12	94552	105663	cytoskeleton (putative)	unknown
YCR088W	ABP1______	+1.56	583646	912839	cytoskeleton	actin binding protein
YDR023W	SES1______	-1.18	1787077	1516941	protein synthesis	tRNA synthetase, seryl
YDR388W	RVS167____	+1.50	463998	696981	cytoskeleton	actin-binding protein
YER085C	__________	-1.19	132781	111451	unknown	unknown
YGL081W	__________	-1.15	130331	113600	unknown	unknown
YGR188C	BUB1______	-1.05	266797	254509	cell cycle, checkpoint	protein kinase
YHR205W	SCH9______	+1.05	299384	315444	signaling	protein kinase
YJL082W	IML2______	+1.23	139873	171583	plasmid maintenance (putative)	unknown
YKL079W	SMY1______	+1.28	173473	221883	cytoskeleton	kinesin-related protein
YLR014C	PPR1______	-1.00	181849	181123	pyrimidine biosynthesis	transcription factor
YLR386W	__________	+1.19	161837	192907	unknown	unknown
YNL173C	MDG1______	-1.15	185669	162077	signaling, pheromone pathway	unknown
YOL079W	__________	-1.09	166771	152441	unknown	unknown; similar to NADH dehydrogenase chain 4-honeybee
YOR291W	__________	-1.04	657904	635041	unknown	unknown; similar to cation translocating ATPases
YPL267W	__________	+1.04	228511	237339	unknown	unknown
YBL091C	MAP2______	+1.20	573000	687681	protein processing	methionine aminopeptidase 2
YDL093W	PMT5______	+1.05	293267	308341	protein glycosylation	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase
YDR216W	ADR1______	+1.17	288186	337387	transcription	ADH2 and peroxisomal protein transcription factor
YFR016C	__________	+1.30	482696	628994	unknown	unknown; similar to Uso1p and to rat neurofilament
YGR021W	__________	-1.05	296708	283639	unknown	unknown
YHR034C	__________	-1.12	412793	369279	unknown	unknown
YIR004W	DJP1______	+1.07	424063	455406	peroxisome biogenesis	unknown
YJR060W	CBF1______	-1.09	192091	176344	mitosis	kinetochore protein
YKR057W	RPS21A____	-1.59	12917130	8126024	protein synthesis	ribosomal protein S21A
YLR214W	FRE1______	-2.50	1228881	490971	iron homeostasis	ferric (and cupric) reductase
YML084W	__________	-1.05	124558	118261	unknown	unknown
YMR314W	PRE5______	+1.08	1299503	1399765	protein degradation	20S proteasome subunit(alpha6)
YNR036C	__________	-1.12	769023	689312	unknown	unknown; similar to ribosomal protein S12
YOR115C	TRS33_____	+1.11	580716	643385	secretion (putative)	transport protein particle (TRAPP) subunit, 33 kD
YPL091W	GLR1______	-1.09	1077242	986929	glutathione metabolism	glutathione reductase
YPR182W	SMX3______	-1.01	379480	377058	mRNA splicing	core snRNP protein
YBR162W	YSY6______	+1.14	1385780	1578137	secretion (putative)	unknown
YCR099C	__________	+1.31	137292	180121	unknown	unknown; similar to Pep1p, probably represents a fragmented coding region of a pseudogene
YDR400W	URH1______	+1.62	211425	342892	pyrimidine metabolism	uridine nucleosidase
YER095W	RAD51_____	+1.36	249588	338985	DNA repair and recombination	recombinase
YGL093W	SPC105____	+1.11	234411	260938	cytoskeleton	spindle pole body component
YGR200C	ELP2______	-1.07	521680	485627	transcription	RNA polymerase II subunit (elongator)
YJL094C	__________	+1.35	150658	203428	unknown	unknown; similar to Enterococcus hirae Na+/H+-antiporter
YKL091C	__________	+1.21	206005	249765	unknown	unknown; similar to Sec14p
YLR026C	SED5______	+1.16	383249	443262	secretion	ER-to-Golgi t-SNARE
YLR398C	SKI2______	+1.01	153467	155012	mRNA decay and virus resistance	putative helicase
YMR132C	__________	-1.09	196256	179579	unknown	unknown
YNL185C	MRPL19____	-1.14	400829	352326	protein synthesis	ribosomal protein, mitochondrial L19
YOL091W	SPO21_____	-1.01	150179	148802	sporulation	unknown
YOR302W	__________	-1.13	117372	103490	unknown	unknown
YPL279C	__________	-1.52	517854	341746	unknown	unknown
YAL011W	__________	-1.31	204446	156256	unknown	unknown
YBR175W	__________	-1.30	259408	200260	unknown	unknown
YCRX05W	__________	-1.45	153576	105868
YDR046C	BAP3______	+1.15	276371	317853	transport	branched-chain amino acid permease
YDR413C	__________	-1.94	486217	250385	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YER108C	FLO8______	-1.21	216768	178606
YGL106W	MLC1______	-1.04	841596	809764	cytoskeleton	myosin light chain
YGR213C	RTA1______	+2.16	120947	261721	7-aminocholesterol resistance	unknown
YIL010W	DOT5______	+1.74	327181	568395	transcription	derepressor of telomeric silencing
YJL107C	__________	+1.15	117723	134922	unknown	unknown
YKL103C	LAP4______	+1.94	173557	336992	protein degradation	vacuolar aminopeptidase ysc1
YLR037C	__________	+1.48	157784	233020	unknown	unknown; similar to Pau3p and other members of the PAU1
YMR144W	__________	+1.16	214884	250159	unknown	unknown
YNL198C	__________	-1.05	106570	101261	unknown	unknown
YOR314W	__________	+1.02	110301	112955	unknown	unknown
YPR009W	__________	+1.04	367373	383171	unknown	unknown
YBL102W	SFT2______	-1.12	376416	337087	unknown	suppresses sed5 ts mutants
YCL009C	ILV6______	+1.14	583891	664894	isoleucine and valine biosynthesis	acetolactate synthase
YDL106C	GRF10_____	-1.16	167493	144763	phosphate signaling	transcription factor
YDR229W	__________	+1.01	126541	127413	unknown	unknown
YEL010W	__________	+1.01	95558	96889	unknown	unknown
YFR029W	PTR3______	+1.15	159180	182584	transport	peptide permease regulator
YGR032W	GSC2______	+5.50	163630	900706	cell wall biogenesis	1,3-beta-D-glucan synthase subunit
YHR046C	__________	-1.10	355252	324115	unknown	unknown; similar to inositol monophosphatase of E. coli,
YIR017C	MET28_____	+1.42	131672	186380	sulfur amino acid metbolism	transcriptional activator
YJR073C	OPI3______	+1.61	297904	479906	phospholipid metabolism	methylene-fatty-acyl-phospholipid synthase
YKR070W	__________	+1.30	369041	478592	unknown	unknown
YLR227C	__________	+1.03	220153	226372	unknown	unknown
YML096W	__________	-1.14	421492	368762	unknown	unknown
YNL010W	__________	+1.11	2420379	2687173	unknown	unknown
YNR049C	MSO1______	+1.13	467585	527115	secretion	unknown; interacts with Sec1p
YOR128C	ADE2______	-1.06	801702	753579	purine biosynthesis	phosphoribosylaminoimidazole carboxylase
YPL104W	MSD1______	-1.06	198784	187080	protein synthesis	tRNA synthetase, mitochondrial, aspartyl
YPR195C	__________	-1.10	129142	117365	unknown	unknown
YAL023C	PMT2______	+1.07	575953	618259	protein glycosylation	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase
YBR187W	__________	-1.65	484233	294156	unknown	unknown; similar to ND5 and PSB2 (SP:P03920 and SP:P20898)
YCRX17W	__________	+1.14	591955	672468
YDR058C	TGL2______	+1.05	137804	145196	fatty acid metabolism	triacylglycerol lipase
YDR425W	__________	+1.07	163708	175859	unknown	unknown
YGL118C	__________	+1.02	87581	89626	unknown	unknown; similar to Autographa californica late expression
YGR225W	AMA1______	+1.07	86019	92181	sporulation	activator of meiotic anaphase promoting complex
YIL021W	RPB3______	-1.14	753403	662998	transcription	RNA polymerase II 45 kDa subuni
YJL119C	__________	+1.06	138985	146680	unknown	unknown
YKL115C	__________	-1.07	112125	105157	unknown	unknown
YLR049C	__________	+1.03	322896	332299	unknown	unknown
YLR421C	RPN13_____	+1.19	1008530	1195423	protein degradation (putative)	26S proteasome subunit (putative)
YMR155W	__________	+1.08	217899	235526	unknown	unknown; similar to E. coli ribosomal protein S8
YNL210W	MER1______	+1.29	127144	163582	meiosis, MER2 mRNA splicing	RNA binding protein
YOL114C	__________	-1.07	132261	123189	unknown	unknown; similar to human DS-1 protein
YOR326W	MYO2______	-1.09	130297	119414	cytoskeleton	myosin, class V
YPR021C	__________	+1.11	268346	297561	unknown	unknown; similar to proteins of the mitochondrial carrier family
YBR001C	NTH2______	-1.12	203651	181271	trehalose metabolism	alpha,alpha-trehalase
YCL022C	__________	-1.34	306235	229121	unknown	unknown
YDL118W	__________	-1.06	194424	183666	unknown	unknown
YEL021W	URA3______	+1.17	15842660	18490894	pyrimidine biosynthesis	orotidine-5'-phosphate decarboxylase
YFR038W	__________	-1.36	675922	498210	unknown	unknown
YGR039W	__________	-1.07	194295	181166	unknown	unknown; similar to Sauroleishmania tar protein 1
YIR026C	YVH1______	-1.26	563517	446841	sporulation	protein phosphatase
YJR086W	STE18_____	+1.03	548204	562482	signaling, pheromone pathway	gamma subunit of G protein
YKR082W	NUP133____	-1.01	529454	525332	nuclear protein targeting	nuclear pore protein
YLR237W	THI7______	-1.05	192649	182781	transport	thiamine transporter
YML106W	URA5______	-1.17	3474903	2975734	pyrimidine biosynthesis	orotate phosphoribosyltransferase
YNL022C	__________	-1.03	461586	448918	unknown	unknown
YNR061C	__________	+1.10	841449	924015	unknown	unknown
YOR140W	SFL1______	+1.01	226450	227723	cell surface assembly	transcription factor
YPL116W	HOS3______	+1.12	205481	230589	unknown	unknown; similar to Hda1p, Rpd3p, Hos2p, and Hos1p
YAL034W	MTW1______	-1.31	224163	171514	unknown	unknown
YBR199W	KTR4______	+1.03	308841	318928	protein glycosylation	putative alpha-1,2-mannosyltransferase
YDR070C	__________	+1.00	156041	156329	unknown	unknown
YDR437W	__________	-1.15	209191	181720	unknown	unknown
YER131W	RPS26B____	-1.12	15468824	13764567	protein synthesis	ribosomal protein S26B
YGL130W	CEG1______	-1.09	224018	204960	mRNA capping	mRNA guanylyltransferase
YGR237C	__________	+1.27	213145	270557	unknown	unknown
YIL033C	SRA1______	+1.35	505476	682058	signaling?	cAMP dependent protein kinase, regulatory subunit
YJL131C	__________	+1.03	235514	243529	unknown	unknown; similar to carbamylphosphate synthetase
YKL127W	PGM1______	+1.42	438269	622265	glycolysis	phosphoglucomutase
YLR061W	RPL22A____	-1.68	8613328	5140989	protein synthesis	ribosomal protein L22A
YLR431C	__________	+1.11	204833	226489	unknown	unknown
YNL222W	SSU72_____	-1.19	147931	123978	transcription	nuclear protein
YOL126C	MDH2______	-2.00	431381	215735	TCA cycle	malate dehydrogenase
YOR338W	__________	+1.09	166259	181798	unknown	unknown
YPR033C	HTS1______	+1.15	1869978	2144572	protein synthesis	tRNA synthetase, histidyl
YBR012W	TY1A______	+1.41	3075992	4327408	unknown	unknown
YCL034W	__________	-1.04	546584	523496	unknown	unknown
YDL130W	RPP1B_____	-1.48	12822783	8670076	protein synthesis	ribosomal protein L44', acidic
YDR253C	MET32_____	-1.16	384558	331234	methionine metabolism	transcription factor
YEL033W	__________	-2.16	5379762	2490079	unknown	unknown
YFR050C	PRE4______	+1.18	1151452	1364147	protein degradation	proteasome subunit, B type
YGR051C	__________	+1.31	241692	316216	unknown	unknown
YHR067W	__________	+1.02	200960	204849	unknown	unknown
YIR038C	GTT1______	+1.16	381078	442670	glutathione metabolism	glutathione transferase
YJR097W	__________	-1.03	217051	210441	unknown	unknown; similar to E. coli DnaJ
YKR094C	RPL40B____	-1.30	14574986	11241834	protein synthesis	ribosomal protein L40B
YLR249W	YEF3______	-1.15	157594	137073	protein synthesis	translation elongation factor eEF3
YML117W	__________	+1.27	165320	209811	unknown	unknown
YNL034W	__________	-1.23	140216	114318	unknown	unknown; similar to Ynl018p
YNR073C	__________	-1.19	155610	130915	unknown	unknown; similar to E. coli D-mannonate oxidoreductase
YOR150W	MRPL23____	+1.10	490206	538058	protein synthesis	ribosomal protein, mitochondrial large subunit
YPL128C	TBF1______	-1.07	319035	298232	telomere length regulation	telomere TTAGGG repeat-binding factor
YAL043C	PTA1______	+1.05	141728	148306	tRNA processing	unknown
YBR211C	AME1______	-1.04	218419	210544	unknown	microtubule associated
YDR082W	STN1______	+1.13	196095	220757	telomere length regulation	asssociates with Cdc13p
YDR449C	__________	-1.17	492465	420599	unknown	unknown
YER141W	COX15_____	-1.08	312408	289861	respiration	cytochrome oxidase assembly factor
YGL142C	GPI10_____	+1.09	160304	174581	phospholipid metabolism	glycosyl phosphatidyl inositol (GPI) synthesis

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YGR249W	MGA1______	+1.03	112398	115276	pseudohyphal growth (putative)	unknown
YIL045W	PIG2______	+1.07	199733	213738	glucose repression	(putative) Glc7p regulatory subunit
YJL143W	TIM17_____	-1.20	965791	806222	mitochondrial protein targeting	inner membrane translocase component
YKL139W	CTK1______	+1.10	193823	212391	transcription	protein kinase; phosphorylates RNA pol. II subunit
YLR073C	__________	-1.35	606794	447942	unknown	unknown
YLR443W	ECM7______	+1.36	270715	369521	cell wall biogenesis	unknown
YMR176W	ECM5______	+1.26	358343	450475	cell wall biogenesis	unknown
YNL234W	__________	-1.01	190796	188951	unknown	unknown; similar to mammalian globins
YOL138C	__________	-1.20	318665	266220	unknown	unknown
YOR348C	PUT4______	-1.13	139434	123711	transport	proline and gamma-aminobutyrate permease
YPR045C	__________	-1.02	198001	193721	unknown	unknown; similar to C. elegans protein
YBR023C	CHS3______	+1.70	139690	237336	cell wall biogenesis	chitin synthase III
YCL046W	__________	+1.09	86489	94664	unknown	unknown
YDL140C	RPO21_____	-1.03	660385	638226	transcription	RNA polymerase II 215 kD subunit
YEL045C	__________	-1.02	107672	105586	unknown	unknown
YGR063C	SPT4______	+1.10	507579	559516	transcription	elongation factor
YHR078W	__________	+1.02	214090	218404	unknown	unknown
YJR109C	CPA2______	+1.08	142879	154882	glutamate metabolism	carbamyl phosphate synthetase
YKR106W	__________	-1.11	142429	128113	unknown	major facilitator superfamily
YLR258W	GSY2______	+2.18	153548	335243	glycogen metabolism	glycogen synthase
YML129C	COX14_____	+1.05	324589	339944	respiration	cytochrome-c oxidase assembly protein
YNL044W	YIP3______	+1.47	1171527	1720902	unknown	unknown; interacts with Ypt protein(s)
YOR162C	YRR1______	+1.11	317555	351768	transport	transcriptional activator of SNQ2
YPL140C	MKK2______	+1.06	228649	243299	signaling, PKC1 pathway	MAP kinase (mitogen-activated protein kinase)
YAL056W	__________	+1.05	83774	88285	unknown	unknown
YBR223C	__________	+1.26	95648	120456	unknown	unknown
YDR094W	__________	+1.11	419651	463734	unknown	unknown
YDR461W	MFA1______	+6.95	111465	774503	mating	a-factor precursor
YER151C	UBP3______	+1.21	232081	280506	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YGL154C	LYS5______	+1.08	248922	269947	lysine biosynthesis	aminoadipate-semialdehyde dehydrogenase subunit
YGR261C	APL6______	-1.12	278749	249605	vacuolar protein targeting	AP-3 complex subunit
YIL057C	__________	-1.37	1236766	902614	unknown	unknown
YJL155C	FBP26_____	+2.29	169286	387381	fructose metabolism	fructose-2,6-bisphosphatase
YKL151C	__________	+1.57	229526	360390	unknown	unknown
YLR085C	ARP6______	+1.06	183623	195053	cytoskeleton (putative)	actin-related protein
YLR455W	__________	+1.02	221251	224956	unknown	unknown
YMR188C	__________	-1.12	441407	393348	unknown	unknown; similar to 30S ribosomal proteins (S17)
YNL246W	__________	+1.20	530325	633796	unknown	unknown; similar to Drosophila melanogaster SET protein
YOL150C	__________	-1.70	586950	345065	unknown	unknown
YOR360C	PDE2______	+1.16	553876	640170	signaling (putative)	high affinity 3',5'-cAMP phosphodiesterase
YPR057W	BRR1______	+1.01	334517	337324	mRNA splicing	required for snRNP biogenesis
YBR035C	PDX3______	+1.64	491803	806929	sterol uptake (putative)	pyridoxine (pyridoxamine) phosphate oxidase
YCL058C	__________	+1.02	602446	612463	unknown	unknown
YDL152W	__________	+1.08	108266	116907	unknown	unknown
YDR273W	__________	+1.08	144788	156710	unknown	unknown
YEL057C	__________	+1.08	152393	164808	unknown	unknown
YGR075C	PRP38_____	-1.07	375845	351124	mRNA splicing	U4/U6 snRNA dissociation factor
YHR089C	GAR1______	-1.37	2039224	1491030	rRNA processing	snoRNP protein
YJR121W	ATP2______	+1.55	1524902	2365606	ATP synthesis	F1F0-ATPase complex, F1 beta subunit
YLR269C	__________	-1.03	218043	211883	unknown	unknown
YMR008C	PLB1______	+3.25	268999	873920	phospholipid metabolism	phospholipase B
YOR174W	MED4______	-1.05	116185	110321	transcription	RNA polymerase II mediator subunit
YPL152W	RRD2______	+1.21	271863	328604	drug resistance	unknown
YBR235W	__________	+1.09	123937	134859	unknown	unknown; similar to human SLC12A1 gene for which mutations
YDR104C	SPO71_____	+1.07	137552	146746	sporulation	unknown
YDR473C	PRP3______	-1.02	229595	225372	mRNA splicing	U4/U6 snRNP protein
YER161C	SPT2______	+1.06	482713	511376	chromatin structure	HMG-like non-histone protein
YGL166W	CUP2______	+1.95	297267	580289	transcription	copper-dependent transcriptional activator
YGR273C	__________	-1.13	164744	145647	unknown	unknown
YIL068C	SEC6______	-1.10	653890	595931	secretion	exocyst complex subunit
YJL167W	ERG20_____	-1.19	4191400	3526748	sterol metabolism	farnesyl-pyrophosphate synthetase
YKL163W	PIR3______	+1.07	2258919	2419589	unknown	unknown; similar to members of the Pir1p/Hsp150p/Pir3p
YLR097C	__________	+1.18	277691	327893	unknown	unknown
YLR467W	YRF1-5____	+1.93	1626770	3135400	unknown	Y' helicase (subtelomerically-encoded)
YMR199W	CLN1______	+1.58	269043	425336	cell cycle	G1/S cyclin
YNL258C	__________	+1.01	123236	124043	unknown	unknown
YOL162W	__________	+1.30	135699	177021	unknown	unknown
YOR372C	NDD1______	-1.07	671112	626396	mitosis (putative)	unknown
YPR069C	SPE3______	+1.01	114869	115998	polyamine biosynthesis	putrescine aminopropyltransferase (spermidine synthase)
YBR047W	__________	-1.01	95278	94620	unknown	unknown
YCL073C	__________	-1.12	127425	113969	unknown	major facilitator superfamily
YDL164C	CDC9______	-1.06	325077	305601	DNA replication and repair	DNA ligase
YDR285W	ZIP1______	-1.27	141072	111394	meiosis	synaptonemal complex protein
YEL068C	__________	-1.16	196969	170520	unknown	unknown
YGR087C	PDC6______	-2.52	3290656	1308319	glycolysis	pyruvate decarboxylase 3
YHR101C	BIG1______	-1.06	232614	219031	signaling (putative)	suppresses rot1/rot2 synthetic lethality
YJR133W	XPT1______	-1.15	667453	578093	xanthine utilization	xanthine phosphoribosyltransferase
YLR281C	__________	-1.05	111334	106180	unknown	unknown
YMR020W	FMS1______	+1.34	246003	329902	sterol metabolism (putative)	unknown
YNL066W	SUN4______	-1.00	1456065	1452418	aging	unknown
YOR186W	__________	-1.15	137922	119653	unknown	unknown
YPL164C	MLH3______	+1.08	227211	245110	DNA repair; DNA recombination	MutL homolog
YAR020C	PAU7______	+1.10	121647	134394	unknown	unknown; similar to Pau3p/Ycr104p, PAU1 family
YBR247C	ENP1______	-1.39	754431	542198	protein glycosylation	putative oligosaccharyltransferase complex subunit
YDR116C	__________	-1.06	260299	246419	unknown	unknown; similar to prokaryotic ribosomal protein L1
YDR485C	__________	+1.02	150622	153914	unknown	unknown; similar to human YL-1 protein, GB:D43642
YER172C	BRR2______	-1.09	237217	217521	mRNA splicing	RNA helicase
YGL178W	MPT5______	+1.11	117372	129946	unknown	unknown
YGR285C	ZUO1______	+1.09	5628955	6128184	unknown	binds Z-DNA
YIL078W	THS1______	+1.13	2101605	2377626	protein synthesis	tRNA synthetase, threonyl
YJL179W	PFD1______	+1.09	548481	595520	protein folding	prefoldin subunit 1
YKL175W	__________	+1.40	554016	777339	unknown	unknown
YLR109W	AHP1______	-1.21	7717478	6400059	oxidative stress response	alkyl hydroperoxide reductase
YMR211W	__________	-1.08	258129	238224	unknown	unknown; similar to beta-tubulins
YNL270C	ALP1______	-1.06	155487	147075	transport	basic amino acid permease
YOR008C	SLG1______	-1.11	136488	122568	signaling, stress response and cell wall integrity	unknown
YOR384W	FRE5______	-1.21	148186	122593	unknown	unknown; similar to Fre2p
YPR081C	__________	+1.03	227310	234555	unknown	unknown; similar to glycyl-tRNA synthetases
YBR059C	AKL1______	+1.21	253302	305491	unknown	protein kinase
YCLX09W	__________	-1.05	107165	102281

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YDL176W	__________	+1.09	207474	225188	unknown	unknown
YDR297W	SUR2______	+1.81	631593	1141397	sphingolipid metabolism	hydroxylase
YER002W	__________	+1.05	99688	105161	unknown	unknown
YGR099W	TEL2______	+1.06	222547	236348	telomere length regulation	telomere binding protein
YHR113W	__________	+1.22	756247	923506	unknown	unknown; similar to vacuolar aminopeptidase Lap4p/Ape1p
YJR145C	RPS4A_____	+1.26	14017090	17692825	protein synthesis	ribosomal protein S4A
YLR292C	SEC72_____	+1.17	945251	1106307	secretion	ER protein translocation subcomplex subunit
YNL078W	__________	+1.25	343048	429695	unknown	unknown
YOR196C	LIP5______	+1.17	712698	835206	fatty acid metabolism	lipoic acid synthase
YPL176C	__________	+1.15	157607	180887	unknown	unknown; similar to Ssp134p
YAR043C	__________	-1.10	98675	89406
YBR259W	__________	+1.23	122691	150991	unknown	unknown; similar to serine-type carboxypeptidase Prc1p
YDR128W	__________	+1.04	167052	173361	unknown	unknown
YDR497C	ITR1______	-1.28	1110912	869251	transport	inositol permease
YER183C	__________	+1.00	115099	115512	unknown	unknown
YGL190C	CDC55_____	+1.08	243108	262752	cell cycle	protein phosphatase
YIL089W	__________	+1.26	156020	197018	unknown	unknown
YJL191W	RPS14B____	-1.18	4254102	3614813	protein synthesis	ribosomal protein S14B
YKL187C	__________	+1.17	153058	179577	unknown	unknown; similar to 4-mycarosyl isovaleryl-CoA transferase
YLR121C	YPS3______	+6.87	250449	1721074	protein processing	GPI-anchored aspartic protease
YMR223W	UBP8______	-1.02	228193	223907	protein degradation, ubiquitin-mediated	putative deubiquitinating enzyme
YNL282W	POP3______	-1.09	171800	158317	rRNA and tRNA processing	RNase P and RNase MRP subunit
YOR020C	HSP10_____	+1.02	1614605	1651681	protein folding	mitochondrial chaperonin
YPR093C	__________	-1.00	269243	268502	unknown	unknown
YBR071W	__________	+3.07	300620	924081	unknown	unknown; similar to Herpesvirus saimiri EERF2
YCR009C	RVS161____	+1.25	91712	114482	cytoskeleton	actin-binding protein
YDL188C	PPH22_____	+1.34	959810	1286112	cell cycle	protein phosphatase 2A
YDR309C	GIC2______	+3.52	234595	825350	bud emergence	binds Cdc42p
YER012W	PRE1______	+1.14	985859	1119309	protein degradation	20S proteasome subunit C11(beta4)
YHR125W	__________	-1.06	115296	108724	unknown	unknown
YJR157W	__________	-1.01	104608	104071	unknown	unknown
YLR304C	ACO1______	+1.65	552072	910687	TCA cycle	aconitase
YMR043W	MCM1______	-1.23	2674441	2175673	transcription	multifunctional regulator
YNL090W	RHO2______	+1.20	450977	542184	signaling	GTP-binding protein, rho family
YOR208W	PTP2______	+1.30	246809	321318	signaling, high osmolarity pathway	protein tyrosine phosphatase
YPL187W	MF(ALPHA)1	-68.64	14168037	206409	mating	alpha factor precursor
YBL008W	HIR1______	-1.02	92509	90481	transcription	histone transcription inhibitor
YBR271W	__________	-1.43	317920	222497	unknown	unknown; similar to Clostridium botulinum C1 toxin
YDL010W	__________	+1.04	256444	265748	unknown	unknown; similar to Ybr014p and glutaredoxins
YDR140W	__________	-1.80	378229	210154	unknown	unknown
YDR509W	__________	-1.11	110872	99478	unknown	unknown
YFL008W	SMC1______	-1.23	685096	555419	mitosis, chromosome condensation and segregation	unknown
YGL202W	ARO8______	+1.41	1079163	1522249	aromatic amino acid biosynthesis	aromatic amino acid aminotransferase
YHL008C	__________	+1.10	160039	175879	unknown	unknown; similar to E. coli NirC potential formate
YIL100W	__________	-1.03	114998	112076	unknown	unknown
YJL203W	PRP21_____	+1.13	223257	251387	mRNA splicing	U2 snRNP activation
YKL199C	YKT9______	+1.11	216490	240931	unknown	unknown
YLR133W	CKI1______	+1.05	141785	149154	lipid metabolism	choline kinase
YMR235C	RNA1______	+1.00	1927638	1929649	RNA export	GTPase activating protein for Gsp1p
YNL292W	PUS4______	-1.33	434986	327587	tRNA processing	pseudouridine synthase
YOR032C	HMS1______	+1.11	149188	165747	pseudohyphal growth	similar to myc family of transcription factors
YPL010W	RET3______	+1.06	1625258	1724617	secretion	vesicle coat component
YPR105C	__________	+1.01	516983	522918	unknown	unknown
YBR083W	TEC1______	-1.32	264523	199754	pseudohyphal growth	trancriptional activator
YCR020C	PET18_____	+1.12	138508	155285	mitochondrial DNA maintenance	unknown
YDL200C	MGT1______	+1.16	155191	179345	DNA repair	6-O-methylguanine-DNA methylase
YDR319C	__________	+1.23	196425	241269	unknown	unknown
YER022W	SRB4______	+1.00	219994	220942	transcription	RNA polymerase II mediator subunit
YGL010W	__________	-1.01	146883	145482	unknown	unknown
YGR121C	MEP1______	+1.22	186917	228238	transport	ammonia permease
YHR136C	SPL2______	-1.24	145908	117721	cell cycle	protein kinase inhibitor
YJL010C	__________	-1.32	425835	321509	unknown	unknown
YKL009W	MRT4______	-1.36	1994336	1469924	mRNA decay	unknown
YLL010C	PSR1______	-1.14	341315	300057	salt tolerance (putative)	phosphatase
YLR315W	__________	+1.04	102778	107066	unknown	unknown
YNL102W	POL1______	-1.16	487500	420999	DNA replication	polymerase alpha 180 kD subunit
YOL010W	RCL1______	+1.06	538938	573290	unknown	putative RNA 3'-terminal phosphate cyclase
YOR220W	__________	+2.38	312056	744200	unknown	unknown
YPL199C	__________	-1.07	1162763	1089243	unknown	unknown
YAR069C	__________	-1.03	121280	117598	unknown	unknown
YBL020W	RFT1______	-1.20	242229	202171	cell cycle	unknown
YBR283C	SSH1______	+1.03	1202100	1233566	secretion	ER protein translocation complex subunit
YDL022W	GPD1______	-1.05	560753	536132	glycerol metabolism	glycerol-3-phosphate dehydrogenas
YDR152W	__________	-1.67	846393	507122	unknown	unknown
YDR521W	__________	-1.08	141261	130987	unknown	unknown
YFL017C	GNA1______	-1.11	494126	446265	UDP-N-acetylglucosamine biosynthesis	glucosamine-phosphate N-acetyltransferase
YGL214W	__________	-1.04	112239	107910	unknown	unknown
YHL018W	__________	+1.08	90431	97482	unknown	unknown; similar to human pterin-4-alpha-carbinolamine
YIL112W	__________	+1.08	225438	243225	unknown	unknown; similar to ankyrin and coiled-coil proteins
YJL215C	__________	+1.03	105285	108643	unknown	unknown
YKL211C	TRP3______	+1.26	428224	538823	tryptophan biosynthesis	anthranilate synthase component II and indole-3-phosphate synthase
YLR145W	__________	+1.03	219327	226464	unknown	unknown
YML019W	OST6______	+1.02	524796	537465	protein glycosylation	putative N-oligosaccharyltransferase complex subunit
YMR246W	FAA4______	-1.33	1439854	1085680	fatty acid metabolism	long-chain-fatty-acid--CoA ligase
YNL304W	YPT11_____	-1.06	209165	196416	signaling (putative)	unknown; similar to Ypt1p and many other ras-like GTPases
YOR044W	__________	+1.13	162555	184391	unknown	unknown
YPL022W	RAD1______	+1.14	478101	544424	DNA repair, nucleotide excision	repairosome component
YPR117W	__________	-1.04	117163	113024	unknown	unknown
YBR093C	PHO5______	-1.46	984161	673645	phosphate metabolism	acid phosphatase, repressible
YCR030C	__________	-1.18	161560	136798	unknown	unknown
YDL212W	SHR3______	+1.00	576786	577512	secretion; protein targeting, plasma membrane	ER membrane protein
YDR331W	GPI8______	+1.09	243851	266138	protein processing	transamidase (putative), GPI anchor attachment
YER034W	__________	+1.10	167262	183446	unknown	unknown
YGL022W	STT3______	+1.19	465378	554053	protein glycosylation	oligosaccharyltransferase complex assembly
YGR133W	PEX4______	+1.15	193316	222906	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YHR146W	__________	+1.01	896324	908688	unknown	unknown; similar to pheromone adaptation protein Mdg1p
YJL022W	__________	+1.05	124918	131575	unknown	unknown
YKL021C	MAK11_____	-1.31	627078	480356	dsRNA virus propagation	unknown; essential gene
YLL022C	HIF1______	-1.11	580321	521430	chromatin structure	interacts with histone acetyltransferase
YLR327C	__________	+3.59	116244	417144	unknown	unknown; similar to Stf2p

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YMR064W	AEP1______	+1.83	334126	612237	protein synthesis(putative)	ATP9/OLI1 expression
YNL114C	__________	-1.18	886372	750344	unknown	unknown
YOL022C	__________	-1.02	931769	915094	unknown	unknown
YOR232W	MGE1______	-1.21	1893376	1567082	mitochondrial protein targeting	could change to: protein folding; mitochondrial chaperone (has a targeting phenotype, only b/c misfolded proteins accumulate in the mito., which backs the pathway up)
YPL211W	NIP7______	-1.62	2302288	1422101	rRNA processing	unknown
YBL032W	__________	-1.23	627471	509898	unknown	unknown
YBR295W	PCA1______	+1.38	116461	160279	transport	Cu(2+) ATPase
YDL034W	__________	-1.15	110871	96793	unknown	unknown
YDR164C	SEC1______	+1.05	230168	240567	secretion	SNARE docking complex subunit (putative0
YDR533C	__________	+1.45	206105	299337	unknown	unknown
YFL027C	__________	+1.14	196790	223536	unknown	unknown
YHL030W	ECM29_____	-1.05	97216	93024	cell wall biogenesis	unknown
YIL124W	AYR1______	+1.16	518087	601332	lipid metabolism	1-Acyl dihydroxyacetone phosphate reductase
YJR003C	__________	-1.30	403916	311285	unknown	unknown; similar to human collagen alpha 3 (VI) chain
YKL223W	__________	+1.38	110575	153116	unknown	unknown
YLR157C	ASP3-2____	+17.93	131659	2360204	asparagine utilization	L-asparaginase II
YMR259C	__________	-1.08	580515	537585	unknown	unknown
YNL316C	PHA2______	-1.02	219373	214829	phenylalanine biosynthesis	prephenate dehydratase
YOR056C	__________	-1.27	896600	704597	unknown	unknown
YPL034W	__________	+1.15	262488	301176	unknown	unknown
YPR129W	SCD6______	-1.01	656960	652287	secretion (putative)	suppressor of clathrin deficiency
YBR105C	VID24_____	+1.30	270737	350790	vacuolar protein targeting	peripheral vesicle membrane protein
YCR042C	TSM1______	-1.07	157831	146943	transcription	TFIID associated factor (TAF)
YDL224C	WHI4______	+1.07	208354	222249	cell size	putative RNA binding protein
YDR343C	HXT6______	-1.15	2051507	1786924	transport	hexose permease
YER044C	__________	-2.44	638826	261653	unknown	unknown
YGL034C	__________	-1.15	117257	101825	unknown	unknown
YGR145W	__________	-1.36	686582	505580	unknown	unknown; similar to MESA gene of Plasmodium falciparum
YHR158C	KEL1______	-1.24	166535	134637	unknown	null mutant has mating defect
YJL034W	KAR2______	+2.77	3159012	8742814	secretion	BiP homolog; ER protein translocation
YKL033W	__________	+1.41	168461	237122	unknown	unknown
YLL034C	__________	-1.14	289273	253258	unknown	unknown; similar to mammalian valosin-containing protein
YLR339C	__________	+1.06	2921774	3091584	unknown	unknown
YNL126W	SPC98_____	-1.01	174904	173733	cytoskeleton	spindle pole body component
YOL034W	__________	+1.14	210601	239557	unknown	unknown
YOR244W	ESA1______	+1.34	290571	390517	chromatin structure	histone acetyltransferase complex subunit
YPL223C	GRE1______	-1.09	163421	150350	unknown	unknown; induced by osmotic stress
YBL044W	__________	-1.05	109880	105105	unknown	unknown
YDL046W	__________	+1.03	388483	402029	unknown	unknown
YDR174W	HMO1______	-1.03	1492312	1442446	chromatin structure	non-histone protein
YDR545W	YRF1-1____	+1.88	953164	1789973	unknown	Y' helicase (subtelomerically-encoded)
YFL037W	TUB2______	+1.55	895175	1389283	cytoskeleton	beta-tubulin
YGL237C	HAP2______	-1.42	972470	684578	transcription; respiration	transcription factor, activator of CYC1
YHL041W	__________	-1.17	133397	113988	unknown	unknown
YIL136W	OM45______	+1.42	287371	408914	(putative) mitochondrial organization	outer mitochondrial membrane protein
YJR014W	__________	+1.02	904100	923376	unknown	unknown
YKR010C	TOF2______	-1.03	233532	227238	DNA replication (putative)	interacts with DNA
YLR167W	RPS31_____	+1.11	15849454	17600246	protein synthesis	ribosomal protein S31
YML040W	__________	+1.26	3087017	3902533	unknown	unknown
YMR271C	URA10_____	+1.08	193892	209875	pyrimidine biosynthesis	orotate phosphoribosyltransferase
YNL328C	MDJ2______	-1.04	124773	120486	protein folding	mitochondrial chaperonin
YOR068C	__________	-1.21	150193	124478	unknown	unknown
YPL046C	ELC1______	-1.02	984830	965442	transcription	elongation factor Elongin C
YPR139C	__________	+1.25	488539	608856	unknown	unknown
YBR116C	__________	+1.03	107939	111110	unknown	unknown; similar to sea urchin NADH chain ND2
YCR054C	CTR86_____	+1.12	128744	144313	unknown	unknown
YDL236W	PHO13_____	+1.10	757728	834036	unknown	protein phosphatase and 4-nitrophenylphosphatase
YDR355C	__________	-1.02	107064	104700	unknown	unknown
YER055C	HIS1______	-1.25	2261345	1802920	histidine biosynthesis	ATP phosphoribosyltransferase
YGL046W	__________	-1.14	150624	131938	unknown	unknown
YGR157W	CHO2______	+1.23	351554	433399	phospholipid metabolism	phosphatidylethanolamine N-methyltransferase
YHR170W	NMD3______	-1.09	715964	659404	mRNA decay, nonsense-mediated	Nam7p/Upf1p-interacting protein
YJL047C	RTT101____	+1.06	180127	191635	transposition (putative)	unknown; regulator of Ty1 transposition
YKL044W	__________	-1.10	130104	118657	unknown	unknown
YLL046C	RNP1______	-1.05	102126	97068	unknown	ribonucleoprotein
YLR351C	NIT3______	+1.51	747684	1125972	unknown	nitrilase
YNL138W	SRV2______	+1.52	1131563	1722105	signaling	adenylate cyclase-associated protein
YOL046C	__________	-1.08	140902	130831	unknown	unknown
YOR256C	__________	+1.19	243284	290441	unknown	unknown; similar to secretory protein Ssp134p
YPL235W	RVB2______	-1.08	1296173	1195804	unknown	unknown; similar to RUVB
YBL056W	PTC3______	+1.24	646708	801144	osmotic stress response (putative)	protein phosphatase
YDL058W	USO1______	+1.02	580404	594396	secretion	SNARE docking complex assembly
YDR185C	__________	-1.07	165191	154599	unknown	unknown; similar to Msf1p
YFL049W	__________	+1.27	199025	252613	unknown	unknown; similar to Npl6p
YGL249W	ZIP2______	-1.26	174474	138920	meiosis, synapsis	unknown
YIL148W	RPL40A____	-1.14	15810248	13873354	protein synthesis	ribosomal protein L40A
YKR022C	__________	-1.02	462117	451085	unknown	unknown
YLR179C	__________	+1.98	587216	1162275	unknown	unknown; similar to Tfs1p
YML050W	__________	+1.05	193334	203378	unknown	unknown; similar to potato sucrose cleavage protein
YMR283C	RIT1______	-1.05	210478	199709	tRNA processing	initiator methionine tRNA 2'-O-ribosyl phosphate transferase
YNR001C	CIT1______	+2.14	281267	602939	TCA cycle	citrate synthase
YOR080W	DIA2______	+1.28	214045	272984	pseudohyphal growth (putative)	unknown
YPL058C	PDR12_____	-1.19	173258	145725	drug resistance	transporter
YPR151C	__________	-1.20	152204	127012	unknown	unknown
YBR128C	APG14_____	+1.12	140999	158498	autophagy	unknown; interacts with Apg6p/Vps30p
YCR066W	RAD18_____	+1.21	175281	212507	DNA repair, postreplication	forms complex with Rad6p; putative ATPase
YDL248W	COS7______	+2.68	1015598	2722933	unknown	unknown; similar to other subtelomerically-encoded
YER065C	ICL1______	+1.04	166793	173465	glyoxylate cycle	isocitrate lyase
YGL058W	RAD6______	+1.12	593430	662092	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YGR165W	__________	-1.20	405358	338279	unknown	unknown
YHR182W	__________	-1.13	261180	231470	unknown	unknown
YJL059W	YHC3______	+1.03	286174	296165	unknown	unknown; similar to human Batten disease-related protein
YKL056C	__________	+1.04	8549004	8856710	unknown	unknown
YLL058W	__________	+1.13	1907018	2147078	unknown	unknown; similar to Neurospora crassa O-succinylhomoserine
YLR363C	NMD4______	+1.12	202193	227179	unknown	Nam7p/Upf1p-interacting protein
YMR098C	__________	+2.07	268885	555727	unknown	unknown
YNL150W	__________	-1.06	1542538	1449171	unknown	unknown
YOL056W	GPM3______	-1.13	453852	400715	glycolysis	phosphoglycerate mutase
YOR268C	__________	-1.16	123354	106483	unknown	unknown
YPL247C	__________	+1.03	151996	155808	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YBL068W	PRS4______	-1.31	328024	249907	pentose phosphate cycle	ribose-phosphate pyrophosphokinase
YDL070W	BDF2______	+1.61	633659	1022380	unknown	unknown; similar to mammalian glycogen
YDR197W	CBS2______	+1.10	220609	242542	protein synthesis	translation activator of COB mRNA
YFL061W	__________	-1.09	166723	153598	unknown	unknown; similar to E. coli cyanamide hydratase (urea
YGL261C	__________	+1.60	311077	498399	unknown	unknown; similar to Pau1p and members of the PAU1
YHR012W	VPS29_____	+1.34	499370	670317	vacuolar protein targeting	targets vacuolar receptor, Vps10
YIL159W	BNR1______	-1.11	1036771	935385	cytoskeleton	actin filament organization
YJR037W	__________	-1.02	120324	117838	unknown	unknown
YKR034W	DAL80_____	-1.04	103460	99318	nitrogen catabolism	transcription factor
YLR191W	PEX13_____	+1.12	290854	326660	peroxisomal protein targeting	docks peroxisomal protein receptor
YML061C	PIF1______	-1.04	148513	142853	DNA repair, mitochondrial	DNA helicase
YMR294W	JNM1______	+1.06	321254	341025	mitosis, nuclear migration	unknown
YNR013C	__________	+1.09	839920	911362	unknown	unknown; major facilitator superfamily
YOR092W	ECM3______	+1.08	268402	288747	cell wall biogenesis	unknown
YPL068C	__________	+1.02	307056	313628	unknown	unknown
YPR159W	KRE6______	+1.74	364324	632662	cell wall biogenesis	glucan synthase subunit
YBR140C	IRA1______	-1.25	159191	127623	signaling, Ras pathway	GTPase-activating protein for Ras1p and Ras2p
YCR077C	PAT1______	-1.07	515481	479909	mitosis; chromosome transmission	topoisomerase II
YDR012W	RPL4B_____	-1.12	9780600	8734669	protein synthesis	ribosomal protein L4B
YDR377W	ATP17_____	+1.57	600272	944208	ATP synthesis	ATP synthase subunit f
YER074W	RPS24A____	-1.29	10680696	8293685	protein synthesis	ribosomal protein S24A
YGL070C	RPB9______	-1.13	524698	465303	transcription	RNA polymerase II 14.2 subunit
YGR177C	ATF2______	-1.36	263894	193779	acetate ester biosynthesis	alcohol acetyltransferase
YHR194W	__________	+1.16	168888	195992	unknown	unknown
YJL071W	ARG2______	+1.14	161916	185310	arginine biosynthesis	acetylglutamate synthase
YKL068W	NUP100____	-1.09	156285	142945	nuclear protein targeting	nuclear pore protein
YLR003C	__________	-1.13	694224	613184	unknown	unknown
YLR375W	STP3______	+1.38	328608	451907	tRNA splicing	unknown
YMR110C	__________	+1.98	245124	485856	unknown	unknown; similar to aldehyde dehydrogenase
YNL162W	RPL42A____	-1.44	14868100	10297045	protein synthesis	ribosomal protein L42A
YOL068C	HST1______	-1.06	922262	873148	silencing	Sir2p homolog
YOR280C	__________	+1.20	366358	439219	unknown	unknown; similar to S. pombe dihydrofolate reductase
YMR325W	__________	+1.44	269924	389861	unknown	unknown
YBL080C	PET112____	-1.17	140444	120246	protein synthesis	translation of COX2 mRNA (mitochondrial)
YDL082W	RPL13A____	-1.38	11020811	7972797	protein synthesis	ribosomal protein L13A
YDR209C	__________	+1.52	422417	640516	unknown	unknown
YFR005C	SAD1______	+1.13	355364	402701	mRNA splicing, snRNP assembly	unknown
YGR010W	__________	+1.08	230675	248325	unknown	unknown
YHR023W	MYO1______	+1.06	336412	355071	cell wall biosynthesis	myosin heavy chain
YIL171W	HXT12_____	+1.41	160618	226716	transport	hexose permease
YJR049C	UTR1______	+1.25	352104	439186	unknown	putative ferric reductase
YKR046C	__________	+1.00	824428	826333	unknown	unknown
YLR203C	MSS51_____	+1.05	384766	404177	mRNA splicing, COX1 and COB mRNA	unknown
YL16A;_	__________	-1.07	110557	103338
YNR025C	__________	-1.35	653001	483703	unknown	unknown
YOR104W	__________	+1.68	321204	540116	unknown	unknown
YPL080C	__________	-1.14	282469	247457	unknown	unknown
YPR171W	__________	-1.10	233238	212378	unknown	unknown
YBR152W	SPP381____	-1.31	151725	116153	mRNA processing (putative)	U4/U6,U5 snRNP protein
YCR089W	FIG2______	-1.13	110144	97653	mating	extracellular, cell wall protein
YDR024W	__________	-1.37	184408	134798	unknown	unknown
YDR389W	SAC7______	+1.25	203212	253797	signaling	GTPase-activating protein for Rho1p
YER086W	ILV1______	+1.39	397457	551099	isoleucine and valine biosynthesis	threonine deaminase
YGL082W	__________	-1.03	297180	289701	unknown	unknown
YGR189C	CRH1______	+5.96	1047793	6249532	cell wall biogenesis (putative)	unknown; cell wall protein
YHR206W	SKN7______	+1.23	369709	454148	oxidative stress	transcription factor
YJL083W	__________	+1.08	177738	191495	unknown	unknown; similar to Irs4p
YKL080W	VMA5______	+1.24	942559	1166801	vacuolar acidification	vacuolar H+-ATPase V1 sector subunit
YLR015W	BRE2______	+1.01	329303	332233	secretion (putative)	unknown; brefeldin A sensitive
YLR387C	__________	+1.17	383059	448671	unknown	unknown
YMR121C	RPL15B____	-1.10	15415328	14056673	protein synthesis	ribosomal protein L15B
YNL174W	__________	-1.15	542313	472073	unknown	unknown
YOL080C	REX4______	-1.31	282474	216001	RNA processing	RNA exonuclease
YOR292C	__________	-1.06	243879	231100	unknown	unknown
YPL268W	PLC1______	+1.02	160499	163965	signaling	phosphoinositide-specific phospholipase C
YBL092W	RPL32_____	-1.22	4546769	3712966	protein synthesis	ribosomal protein L23
YDL094C	__________	+1.01	147266	149207	unknown	unknown
YDR217C	RAD9______	+1.07	99561	106854	DNA repair; DNA damage checkpoint	unknown
YFR017C	__________	+1.19	152351	182019	unknown	unknown
YGR022C	__________	-1.02	105945	103582	unknown	unknown
YHR035W	__________	-1.02	130151	127712	unknown	unknown; similar to Sec23p, expressed under
YIR005W	IST3______	+1.11	186496	206586	salt tolerance (putative)	unknown
YJR061W	__________	+1.12	215309	241825	unknown	unknown
YKR058W	GLG1______	+1.28	182820	234691	glycogen metabolism	glycogen synthesis initiator
YLR215C	CDC123____	+1.19	261361	310267	unknown	unknown
YMR315W	__________	+4.35	479063	2084508	unknown	unknown
YNR037C	__________	+1.39	348798	484820	unknown	unknown; similar to prokaryotic ribosomal protein S19
YOR116C	RPO31_____	-1.08	783912	724561	transcription	RNA polymerase III 160 kD subunit
YPL092W	SSU1______	-1.36	401499	295221	sulfite tolerance	unknown; plasma membrane protein, major facilitator superfamily
YPR183W	DPM1______	+1.82	1269487	2310814	protein glycosylation	dolichol phosphate mannose synthase
YBR163W	DEM1______	+1.05	171530	180646	cell morphology (putative)	unknown; similar to Pta1p
YCR100C	__________	+1.15	114169	131040	unknown	unknown; similar to Pep1p, probably represents a fragmented coding region of a pseudogene
YDR401W	__________	+1.03	95901	98356	unknown	unknown
YER096W	SHC1______	+1.04	97175	101172	sporulation	unknown; may be involved in chitin synthesis
YGL094C	PAN2______	+1.09	118079	129062	mRNA processing	Pab1p-dependent poly(A) ribonuclease subunit
YGR201C	__________	+1.18	237045	278887	unknown	unknown; similar to translation elongation factors
YHR215W	PHO12_____	-1.69	1554741	918586	phosphate metabolism	secreted acid phosphatase
YJL095W	BCK1______	-1.11	139845	125764	signaling, PKC1 pathway	serine-threonine protein kinase
YKL092C	BUD2______	-1.16	138277	118749	bud site selection	GTPase-activating protein for Rsr1p/Bud1p
YLR027C	AAT2______	+1.72	1051280	1803324	aspartate metabolism	aspartate aminotranferase,
YLR399C	BDF1______	+1.02	439946	448536	meiosis	putative chromatin component
YMR133W	REC114____	-1.02	164574	161716	meiosis, recombination	ds break formation complex subunit
YNL186W	UBP10_____	+1.02	494434	504496	protein degradation, ubiquitin-mediated	ubiquitin C-terminal hydrolase
YOL092W	__________	-1.39	977186	704286	unknown	unknown
YOR303W	CPA1______	+1.08	948594	1026149	arginine biosynthesis	carbamoyl phosphate synthetase, arginine specific
YPL280W	__________	-1.10	116118	105324	unknown	unknown
YAL012W	CYS3______	-1.00	952452	951969	methionine biosynthesis	cystathionine gamma-lyase
YBR176W	ECM31_____	-1.14	200618	176723	cell wall biogenesis	unknown
YCRX06W	__________	-1.20	110835	92314
YDR047W	HEM12_____	-1.32	625620	473292	heme biosynthesis	uroporphyrinogen decarboxylase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YDR414C	ERD1______	-1.36	233718	172461	secretion	ER protein retention
YER109C	FLO8______	-1.06	119708	113310	flocculation (and PHD)	FLO1 activator
YGL107C	__________	+1.09	111891	121816	unknown	unknown
YGR214W	RPS0A_____	-1.26	10958765	8724738	protein synthesis	ribosomal protein S0A
YIL011W	__________	-1.22	269758	220991	unknown	unknown; similar to Yil176p, Yir041p and other members of
YJL108C	__________	+1.27	227716	288729	unknown	unknown
YKL104C	GFA1______	+3.29	511914	1683584	cell wall biogenesis	chitin biosynthesis
YLR038C	COX12_____	-1.06	528531	499336	oxidative phosphorylation	cytochrome-c oxidase, subunit VIb
YMR145C	__________	+1.26	1399321	1759372	unknown	unknown; similar to rotenone-insensitive NADH-ubiquinone
YNL199C	GCR2______	-1.04	331483	318861	glycolysis	transcriptional activator
YOR315W	__________	+1.30	313246	406843	unknown	unknown
YPR010C	RPA135____	-1.05	1303644	1247346	transcription	RNA polymerase I 135 kD subunit
YBL103C	RTG3______	+1.02	139717	142913	glyoxylate cycle	CIT2 regulator
YCL010C	__________	-1.08	108795	100686	unknown	unknown
YDL107W	MSS2______	+1.05	176294	185495	mRNA splicing, COX1 mRNA	unknown
YDR230W	__________	+1.67	161261	268876	unknown	unknown
YEL011W	GLC3______	+1.14	114361	130881	cell wall biogenesis	glycogen branching enzyme
YFR030W	MET10_____	+1.99	166263	331025	sulfate assimilation	sulfite reductase subunit
YGR033C	__________	+1.11	353647	391940	unknown	unknown
YHR047C	AAP1______	+1.13	188492	212946	protein degradation	arginine/alanine aminopeptidase
YJR074W	MOG1______	+1.10	312827	343382	unknown	unknown; interacts with Gsp1p
YKR071C	__________	-1.05	652239	621210	unknown	unknown
YML097C	VPS9______	-1.01	357186	354147	vacuolar protein targeting	similar to mammalian ras inhibitors
YNL011C	__________	+1.19	185458	220794	unknown	unknown
YNR050C	LYS9______	-1.32	1762257	1339566	lysine biosynthesis	saccharopine dehydrogenase
YOR129C	__________	+1.02	248556	253995	unknown	unknown
YPL105C	__________	+1.11	576522	641786	unknown	unknown; similar to Smy2p
YPR196W	__________	+1.07	232871	248812	unknown	regulates MAL genes (YPD)
YAL024C	LTE1______	+1.03	124323	127908	cell cycle	GDP/GTP exchange factor
YBR188C	NTC20_____	+1.08	212753	229319	mRNA splicing	Prp19p-associated complex protein
YCRX18C	__________	-1.23	137329	111595
YDR059C	UBC5______	+2.17	149378	323849	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YDR426C	__________	+1.18	140893	166159	unknown	unknown
YER120W	SCS2______	-1.09	1256326	1151321	inositol metabolism	regulator of INO1 expression
YGL119W	ABC1______	+1.03	164994	169340	respiration	ubiquinol-cyt.-c reductase assembly protein
YGR226C	__________	-1.04	110019	105328	unknown	unknown
YIL022W	TIM44_____	+1.12	321695	359746	mitochondrial protein targeting	inner membrane translocase component
YJL120W	__________	+1.07	146579	157035	unknown	unknown
YKL116C	__________	+1.27	121932	155078	unknown	putative protein kinase
YLR050C	__________	-1.15	323117	280632	unknown	unknown; similar to C-terminal region of human MAC30
YLR422W	__________	+1.10	325417	358487	unknown	unknown
YMR156C	__________	+1.15	174503	201039	unknown	unknown
YNL211C	__________	-1.07	182934	171444	unknown	unknown
YOL115W	TRF4______	-1.11	247095	222531	mitosis, chromosome condensation	unknown
YOR327C	SNC2______	-1.04	998416	955870	secretion	post-Golgi v-SNARE
YPR022C	__________	-1.41	989206	702916	unknown	unknown
YBR002C	RER2______	-1.01	506926	500429	protein glycosylation	cis-prenytransferase
YCL023C	__________	-1.05	101626	96768	unknown	unknown
YDL119C	__________	-1.27	538644	423145	unknown	unknown
YEL022W	GEA2______	-1.04	508164	487434	secretion	GDP/GTP exchange factor for ARF
YFR039C	__________	+1.37	166916	229202	unknown	unknown
YGR040W	KSS1______	+1.25	134770	168926	pheromone signal transduction	protein kinase
YHR057C	CYP2______	-1.33	583018	437480	protein folding	peptidyl-prolyl cis-trans isomerase
YIR027C	DAL1______	+1.05	129488	135485	allantoin utilization	allantoinase
YJR087W	__________	-1.80	561565	312189	unknown	unknown
YKR083C	__________	-1.25	248874	199629	unknown	unknown; similar to paramyosin
YLR238W	__________	-1.04	199107	191170	unknown	unknown
YML107C	__________	-1.07	277647	260050	unknown	unknown
YNL023C	FAP1______	-1.10	397144	360231	transcription (putative)	FKBP12-binding protein
YNR062C	__________	-1.09	144776	132822	unknown	unknown; similar to Haemophilus influenzae L-lactate
YOR141C	ARP8______	-1.06	154297	145104	cytoskeleton (putative)	actin-related protein
YPL117C	IDI1______	-1.86	1413880	759941	isoprenoid biosynthesis	isopentenyl-diphosphate delta-isomerase
YAL034C	FUN19_____	+1.10	151092	166165	unknown	unknown
YBR200W	BEM1______	+1.13	287396	325376	bud emergence	binds Cdc24p
YDR071C	__________	-1.01	1279453	1264431	unknown	unknown
YDR438W	__________	+1.18	181347	213802	unknown	unknown
YER132C	PMD1______	+1.09	463630	505964	meiosis	gene expression regulator (putative)
YGL131C	__________	-1.19	1505856	1262578	unknown	unknown
YGR238C	KEL2______	-1.12	164072	145893	unknown	unknown; similar to Kel1p and Kel3p
YIL034C	CAP2______	+1.20	577437	691833	cytoskeleton	F-actin capping protein subunit
YJL132W	__________	+1.10	175756	193111	unknown	unknown; similar to phospholipase D
YKL128C	PMU1______	-1.06	513161	485064	unknown	phosphomutase homolog; suppresses ts tps2 mutant
YLR062C	__________	-1.61	5806351	3617119	unknown	unknown
YLR432W	IMD3______	-1.11	2818708	2540724	unknown	unknown; similar to Pur5p and inosine-5'-monophosphate dehydrogenase of human and E. coli
YMR167W	MLH1______	+1.03	233677	239867	DNA repair	MutL homolog; mismatch repair
YNL223W	AUT2______	-1.05	220768	210774	autophagy	microtubule-associated protein (putative)
YOL127W	RPL25_____	-1.32	15184260	11470465	protein synthesis	ribosomal protein L25
YOR339C	UBC11_____	-1.11	229281	206601	protein degradation, ubiquitin-mediated (putative)	homolog of ubiquitin carrier protein E2-C
YPR034W	ARP7______	+1.07	489427	524020	cytoskeleton (putative)	actin-related protein
YBR012W	TY1B______	+1.15	15958128	18377276	unknown	unknown
YCL035C	GRX1______	+2.08	801527	1664857	oxidative stress response	glutaredoxin
YDR254W	CHL4______	+1.51	423066	640130	mitosis, chromosome segregation	unknown
YEL034W	HYP2______	-1.85	9390412	5087313	protein synthesis	translation initiation factor eIF5A
YFR051C	RET2______	+1.05	1375506	1444317	secretion	vesicle coat component
YGR052W	__________	-1.14	190580	167134	unknown	unknown
YHR068W	DYS1______	-1.30	1030877	791815	hypusine biosynthesis	deoxyhypusine synthase
YIR039C	YPS6______	+1.28	151588	193642	protein degradation	GPI-anchored aspartic protease
YJR098C	__________	-1.03	161536	157227	unknown	unknown
YKR095W	MLP1______	-1.09	108200	98946	DNA repair (putative)	myosin-like protein
YLR250W	SSP120____	+1.66	672043	1117522	secretion	unknown
YML118W	__________	+1.12	138938	155952	unknown	unknown
YNL035C	__________	+1.07	428721	456992	unknown	unknown
YNR074C	__________	-1.00	228950	228885	unknown	unknown; similar to Bacillus subtilis nitrite reductase
YOR151C	RPB2______	+1.06	818543	869682	transcription	RNA polymerase II 140 kDa subunit
YPL129W	ANC1______	-1.09	1296447	1184287	transcription	TFIIF 30 kD subunit
YAL044C	GCV3______	+1.07	1386680	1480821	glycine metabolism	glycine decarboxylase
YBR212W	NGR1______	+1.15	383613	441625	unknown	glucose-repressible RNA-binding protein
YDR083W	__________	-1.77	962115	545002	unknown	unknown
YDR450W	RPS18A____	-1.68	13148240	7842743	protein synthesis	ribosomal protein S18A
YER142C	MAG1______	-1.15	312098	270685	DNA repair	3-methyladenine DNA glycosylase

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YGL143C	MRF1______	-1.03	233584	226601	protein synthesis	mitochondrial peptide chain release factor
YGR250C	__________	+2.11	256616	542119	unknown	unknown
YIL046W	MET30_____	+1.33	248324	329086	sulfur amino acid metbolism	F-box transcription factor
YJL144W	__________	+1.97	173442	342072	unknown	unknown
YKL140W	TGL1______	+1.05	181273	189554	glycerolipid metabolism	triglyceride lipase-cholesterol esterase
YLR074C	__________	-1.09	670068	616135	unknown	unknown
YLR444C	__________	-1.02	348853	343468	unknown	unknown
YMR177W	MMT1______	+1.11	233644	259071	mitochondrial iron transport	transmembrane domain (4) protein
YNL235C	__________	+1.15	364192	418137	unknown	unknown
YOL139C	CDC33_____	-1.04	3436473	3301499	protein synthesis	translation initiation factor eIF4E
YOR349W	CIN1______	-1.03	153108	148907	mitosis, chromosome segregation	unknown
YPR046W	MCM16_____	+1.02	268868	274248	mitosis,chromosome segregation	unknown
YBR024W	SCO2______	+1.05	86055	90343	respiration	Cox1p and Cox2p stability (putative)
YCL047C	__________	+1.10	243399	267564	unknown	unknown
YDL141W	BPL1______	+1.05	229865	241045	protein processing	biotin:apoprotein ligase
YDR262W	__________	+1.55	356573	553632	unknown	unknown
YEL046C	GLY1______	+1.37	366311	502371	glycine, serine, and threonine metabolism	L-threonine aldolase
YGR064W	__________	+1.14	413555	469744	unknown	unknown
YHR079C	IRE1______	-1.08	110479	102028	protein folding	sensor of unfolded proteins in the ER
YJR110W	__________	+1.34	162117	216887	unknown	unknown
YLR259C	HSP60_____	+1.63	788684	1282550	protein folding	mitochondrial chaperonin
YML130C	ERO1______	+2.06	461831	950233	protein folding	protein disulfide bond formation in the ER
YNL045W	__________	+1.18	328686	388418	unknown	unknown; similar to leukotriene A4 hydrolases and zinc-containing aminopeptidases
YOR163W	DDP1______	-1.10	938808	855826	dinucleoside polyphosphate metabolism	diadenosine and diphosphoinositol polyphosphate phosphohydrolase
YPL141C	__________	+1.36	373003	507085	unknown	unknown; similar to Kin4p
YAL058W	CNE1______	+1.08	231780	249203	secretion	calnexin and calreticulin homolog
YBR224W	__________	+1.14	79875	90778	unknown	unknown
YDR095C	__________	-1.15	140020	121464	unknown	unknown
YDR462W	MRPL28____	+1.11	226698	251738	protein synthesis	ribosomal protein, mitochondrial L28
YER152C	__________	+1.54	326079	501024	unknown	unknown
YGL155W	CDC43_____	+1.25	260041	323850	protein processing	geranylgeranyltransferase subunit
YGR262C	__________	-1.09	498745	455919	unknown	unknown; similar to apple tree calcium/calmodulin-binding
YIL058W	__________	+1.06	196211	207179	unknown	unknown
YJL156C	SSY5______	-1.01	184950	183776	transport, amino acid (putative)	unknown
YKL152C	GPM1______	+1.05	15156429	15968183	glycolysis	phosphoglycerate mutase
YLR086W	SMC4______	-1.04	270651	260082	mitosis, chromosome condensation and segregation	unknown
YLR456W	__________	-1.00	205465	205327	unknown	unknown
YMR189W	GCV2______	-1.09	143828	131630	amino acid metabolism	glycine decarboxylase P subunit
YNL247W	__________	-1.13	1771968	1561801	protein synthesis	tRNA synthetase, cysteinyl
YOL151W	GRE2______	-1.59	654487	411177	unknown	unknown; induced by osmotic stress
YOR361C	PRT1______	+1.05	1150976	1210661	protein synthesis	translation initiation factor eIF3 subunit
YPR058W	YMC1______	+1.12	585936	655424	transport	(putative) mitochondrial carrier
YBR036C	CSG2______	+1.68	757281	1273734	sphingolipid metabolism	mannosylation
YCL059C	KRR1______	-1.33	1141534	855404	unknown	essential
YDL153C	SAS10_____	-1.43	872424	607982	silencing	nuclear protein, reulator of silencing at HML, HMR, telomeres
YDR274C	__________	-1.04	160241	153696	unknown	unknown
YEL058W	PCM1______	+3.55	437626	1553914	aminosugars metabolism	phosphoacetylglucosamine mutase
YGR076C	MRPL25____	-1.06	221228	209124	protein synthesis	ribosomal protein, mitochondrial L25
YHR090C	YNG2______	+1.05	231948	242666	chromatin structure	histone acetyltransferase complex subunit
YJR122W	CAF17_____	-1.01	256099	254482	catabolite repression	component of CCR4 transcriptional complex
YLR270W	__________	-1.45	324479	224548	unknown	unknown
YMR009W	__________	+1.00	571554	574379	unknown	unknown; similar to MMSAB operon regulatory protein
YNL055C	POR1______	+1.08	2461981	2666213	transport	mitochondrial outer membrane porin
YOR175C	__________	+1.10	453952	497163	unknown	unknown
YPL153C	RAD53_____	-1.02	125757	122795	cell cycle, checkpoint	protein kinase
YAR002C	ERP1______	-1.08	97264	90381	membrane trafficking; secretion (putative)	unknown
YBR236C	ABD1______	+1.23	326012	400093	mRNA capping	mRNA cap methyltransferase
YDR105C	__________	+1.21	344182	415754	unknown	unknown
YDR474C	__________	+1.08	181675	196434	unknown	unknown
YER162C	RAD4______	-1.17	189911	162764	DNA repair, nucleotide excision	repairosome component
YGL167C	PMR1______	+1.18	219205	259521	transport	Ca(2+) ATPase
YGR274C	TAF145____	-1.01	185429	183699	transcription	TFIID 145 kD subunit
YJL168C	SET2______	-1.30	414979	319844	galactose regulation	transcriptional repressor of Gal4
YKL164C	PIR1______	+1.19	3946569	4698398	unknown	unknown; Pir1p/Hsp150p/Pir3p family
YLR098C	CHA4______	-1.08	111728	103157	ser/thr metabolism	CHA1 activator
YMR200W	ROT1______	+1.83	351213	642332	cytoskeleton	unknown
YNL259C	ATX1______	+1.17	299779	349671	oxidative stress response	unknown
YOL163W	__________	-1.06	151680	143581	unknown	unknown; similar to Pseudomonas putida phthalate transporter
YOR373W	NUD1______	+1.00	116109	116279	chromatin structure	nucleosome assembly protein
YPR070W	MED1______	+1.07	110462	118158	transcription	RNA polymerase II mediator subunit
YBR048W	RPS11B____	-1.29	15525334	12001513	protein synthesis	ribosomal protein S11B
YCL074W	__________	-1.80	560684	311281	unknown	unknown
YDL165W	CDC36_____	-1.47	288982	196109	transcription	general negative regulator
YDR286C	__________	-1.22	317761	260676	unknown	unknown
YEL069C	HXT13_____	-1.79	379645	212589	transport	hexose permease
YGR088W	CTT1______	+1.17	131762	154448	oxidative stress response	catalase T
YHR102W	KIC1______	+1.17	164305	192706	mitosis (putative)	protein kinase; interacts with Cdc31p
YJR134C	SGM1______	+1.10	329794	361509	unknown; growth on galactose or mannose	unknown
YLR282C	__________	-1.02	101481	99846	unknown	unknown
YMR021C	MAC1______	+1.19	326834	387365	metal-dependent gene regulation	transcription factor
YNL067W	RPL9B_____	-1.04	15824537	15244227	protein synthesis	ribosomal protein L9B
YOR187W	TUF1______	-1.07	1136729	1066187	protein synthesis	translation elongation factor Tu, mitochondrial
YPL165C	__________	+1.12	219847	245985	unknown	unknown
YAR023C	__________	-1.22	151028	123635	unknown	unknown; similar to subtelomerically-encoded proteins
YBR248C	HIS7______	+1.25	556021	695858	histidine biosynthesis	glutamine amidotransferase:cyclase
YDR117C	__________	+1.29	308566	398135	unknown	unknown
YDR486C	__________	+1.35	377952	509856	unknown	unknown; similar to Snf7p
YGL179C	__________	+1.05	120609	126751	unknown	putative protein kinase
YGR286C	BIO2______	-1.10	330140	300439	biotin biosynthesis	biotin synthetase
YIL079C	__________	-1.29	520194	403153	unknown	unknown; similar to gag polyprotein
YJL180C	ATP12_____	+1.05	331223	346753	ATP synthesis	F1F0-ATPase complex assembly
YKL176C	LST4______	+1.14	290567	332253	secretion	unknown; involved in secretion of nitroge- regulated permease
YLR110C	__________	+1.24	13931521	17293779	unknown	unknown; similar to Flo1p, Fig2p, Flo5p, Yal063p, and Ykr102p
YMR212C	EFR3______	-1.07	466284	436532	unknown	unknown; similar to myosin heavy chains; null requires PHO85
YNL271C	BNI1______	-1.07	154791	144802	bud site selection, bipolar	interacts with Rho1p
YOR009W	__________	+1.19	1236635	1472506	unknown	unknown; similar to PAU1 family
YOR385W	__________	+1.86	345801	644008	unknown	unknown
YPR082C	DIB1______	+1.28	422235	542001	unknown	unknown; similar to S. pombe dim1+
YBR060C	ORC2______	-1.09	366533	335259	DNA replication	origin recognition complex, 72 kD subunit
YCLX10C	__________	+1.23	237761	292873

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YDL177C	__________	+1.07	253736	271157	unknown	unknown
YDR298C	ATP5______	+1.58	918518	1450605	ATP synthesis	F1F0-ATPase subunit
YER003C	PMI40_____	+1.65	878210	1451419	mannose metabolism	mannose-6-phosphate isomerase
YGR100W	MDR1______	-1.04	136523	131860	unknown	unknown
YHR114W	BZZ1______	+1.03	545985	562674	cytoskeleton (putative)	actin assembly complex component
YJR146W	__________	-1.10	198406	180000	unknown	unknown
YLR293C	GSP1______	-1.10	7351911	6712302	nuclear protein targeting	GTP-binding protein, ras superfamily
YMR032W	HOF1______	-1.05	250816	239838	cytokinesis	unknown
YNL079C	TPM1______	+1.39	2444004	3402668	cytoskeleton	tropomyosin
YOR197W	__________	+1.47	854810	1254258	unknown	unknown
YPL177C	CUP9______	+1.05	621903	650320	Cu2+ ion homeostasis	putative DNA binding protein
YAR044W	OSH1______	+1.10	353580	388930	sterol biosynthesis (putative)	similar to human oxysterol binding protein
YBR260C	RGD1______	+1.03	237571	243919	unknown	GTPase-activating (GAP) protein (putative)
YDR129C	SAC6______	+1.45	822084	1190445	cytoskeleton	fimbrin homolog
YDR498C	SEC20_____	+1.07	350098	374708	secretion	unknown; ER membrane protein
YER184C	__________	+1.57	148815	233949	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YGL191W	COX13_____	-1.05	1193234	1134152	oxidative phosphorylation	cytochrome-c oxidase subunit VIa
YIL090W	__________	+1.06	331050	349334	unknown	unknown
YJL192C	__________	+1.16	764447	884582	unknown	unknown; similar to E. coli
YKL188C	PXA2______	+1.07	152870	163657	transport	peroxisomal fatty acid transporter, ABC family
YLR122C	__________	+1.06	109104	116107	unknown	unknown
YNL283C	WSC2______	+1.35	411004	554831	cell wall biogenesis	alpha-1,4-glucan-glucosidase
YOR021C	__________	-1.42	1667506	1178164	unknown	unknown
YPR094W	__________	-1.06	338355	317905	unknown	unknown
YBR072W	HSP26_____	-1.04	90382	87176	diauxic shift	stress-induced protein
YCR010C	__________	-1.15	135665	117599	unknown	unknown
YDL189W	__________	-1.05	425275	405177	unknown	unknown
YDR310C	SUM1______	-1.05	128179	121939	silencing	nuclear protein
YER013W	PRP22_____	+1.08	219797	237150	mRNA splicing	RNA helicase
YGR110W	__________	+2.01	126091	253253	unknown	unknown
YHR126C	__________	+1.08	229830	247412	unknown	unknown; similar to members of the Pir1p/Hsp150p/Pir3p
YJR158W	HXT16_____	+1.15	166583	192066	transport	hexose permease
YLR305C	STT4______	+1.04	515316	536815	signaling, PKC1 pathway	phosphatidylinositol-4-kinase
YMR044W	IOC4______	-1.01	370278	367254	unknown	unknown
YNL091W	__________	+1.12	639725	717459	unknown	unknown; similar to Uso1p and human NF2 neurofibromatosis
YOR209C	NPT1______	+1.60	1214437	1939168	NAD biosynthesis	nicotinate phosphoribosyltransferase
YPL188W	POS5______	+1.16	354761	411298	unknown	unknown; similar to Utr1p and Yel041p
YBL009W	__________	-1.39	236792	170017	unknown	unknown
YBR272C	HSM3______	-1.24	232255	186735	mismatch repair	unknown; MutS homolog
YDL011C	__________	+1.25	144338	180777	unknown	unknown
YDR141C	DOP1______	-1.17	624740	532177	unknown	unknown; similar to Yps1p and E. nidulans dopA
YDR510W	SMT3______	-1.37	1569381	1142959	protein degradation	ubiquitin-like protein
YFL009W	CDC4______	-1.48	510254	345336	cell cycle	SCF-Cdc4p complex component
YGL203C	KEX1______	+1.03	669051	687908	secretion	carboxypeptidase (YSC-alpha)
YIL101C	XBP1______	+1.02	248814	254319	stress response	transcriptional repressor
YJL204C	__________	-1.13	792494	701918	unknown	unknown; similar to Tor2p, member of a family of
YKL200C	__________	-1.02	140723	138586
YLR134W	PDC5______	-1.26	11224788	8920656	glycolysis	pyruvate decarboxylase
YMR236W	TAF17_____	+1.00	621131	623531	transcription	TFIID 17 kD subunit
YNL293W	MSB3______	+1.65	213802	352842	unknown	unknown; suppresses bud emergence mutant
YOR033C	DHS1______	+1.15	236215	271921	DNA repair	exonuclease; also recombination
YPL011C	TAF47_____	+1.15	327270	374996	transcription	component of TAF(II) complex
YPR106W	ISR1______	-1.16	402248	347776	staurosporine resistance	protein kinase
YBR084C	RPL19A____	-1.19	15699086	13152255	protein synthesis	ribosomal protein L19A
YCR021C	HSP30_____	+1.04	376538	390680	diauxic shift	plasma membrane heat shock protein
YDL201W	__________	-1.25	503279	403213	unknown	unknown
YDR320C	__________	-1.16	374586	323926	unknown	unknown; similar to human transformation-sensitive
YER023W	PRO3______	+1.43	440518	630062	proline biosynthesis	delta 1-pyrroline-5-carboxylate reductase
YGL011C	SCL1______	+1.08	1306665	1417375	protein degradation	20S proteasome subunit YC7ALPHA/Y8
YGR122W	__________	+1.21	225638	273587	unknown	unknown
YHR137W	ARO9______	-1.09	249171	228979	aromatic amino acid metabolism	aromatic amino acid aminotransferase II
YJL011C	__________	-1.09	299999	275264	unknown	unknown
YKL010C	UFD4______	-1.00	102171	102053	protein degradation, ubiquitin-mediated	unknown; may influence multi-Ub chain topology
YLL011W	SOF1______	-1.24	513511	413734	rRNA processing	nucleolar snRNP protein
YLR316C	TAD3______	+1.05	221659	232247	tRNA processing	tRNA-specific adenosine deaminase subunit
YMR053C	STB2______	+1.77	138255	244811	unknown	binds Sin3p
YNL103W	MET4______	+1.34	400950	535690	sulfur amino acid metabolism	transcriptional activator
YOL011W	PLB3______	+2.02	333304	673092	phospholipid metabolism	phospholipase B
YOR221C	MCT1______	-1.04	336820	323335	fatty acid metabolism	malonyl-CoA:ACP transferase
YPL200W	__________	-1.07	109056	102120	unknown	unknown
YAR070C	__________	+1.00	106904	107310	unknown	unknown
YBL021C	HAP3______	+1.00	268134	268199	transcription	component of heterotrimeric CCAAT-binding factor
YBR284W	__________	+1.14	99948	114251	unknown	unknown; similar to AMP deaminase
YDL023C	__________	-1.06	153550	145000	unknown	unknown
YDR153C	__________	+1.16	194798	225467	unknown	unknown
YDR522C	SPS2______	-1.04	111328	107394	meiosis	unknown
YGL215W	CLG1______	+1.74	364448	633486	cell cycle	cyclin-like (Pho85p)
YHL019C	APM2______	+1.28	170940	219311	endocytosis	AP-2 complex subunit
YIL113W	__________	-1.09	119977	110143	unknown	protein phosphatase
YJL216C	__________	-1.03	134737	130579	unknown	unknown; similar to Mal62p (glucosidase P1)
YKL212W	SAC1______	+1.49	328574	487954	secretion	ER/Golgi ATP/ADP exchanger
YLR146C	SPE4______	+1.07	329374	350796	spermine biosynthesis	spermine synthase
YML020W	__________	+1.12	173689	194989	unknown	unknown
YMR247C	__________	-1.13	609831	541640	unknown	unknown
YNL305C	__________	+1.43	272576	390597	unknown	unknown; similar to Aspergillus nidulans negative-acting
YOR045W	TOM6______	-1.04	496049	474884	mitochondrial protein targeting	outer membrane translocase component
YPL023C	MET12_____	+1.12	359269	401753	methionine biosynthesis	methylenetetrahydrofolate reductase
YPR118W	__________	+1.10	971222	1072094	unknown	unknown
YBR094W	__________	+1.03	360003	371783	unknown	unknown; similar to Mec1p and porcine tubulin-tyrosine
YCR031C	RPS14A____	-1.07	7214343	6731630	protein synthesis	ribosomal protein S14A
YDL213C	__________	-1.17	895671	762300	unknown	unknown
YDR332W	__________	+1.02	203372	208239	unknown	unknown; similar to DEAD box family helicases
YER035W	EDC2______	+1.95	277117	539325	mRNA processing	unknown; genetic interaction with dcp2-7
YGL023C	PIB2______	+1.01	255422	257620	signaling (putative)	unknown; binds phosphatidylinositol 3-phosphate
YGR134W	__________	-1.11	111514	100014	unknown	unknown
YHR147C	MRPL6_____	-1.25	442588	353961	protein synthesis	ribosomal protein, mitochondrial L6
YJL023C	PET130____	+1.17	190426	222391	protein synthesis, mitochondrial	unknown
YKL022C	CDC16_____	+1.16	212501	247492	cell cycle	anaphase-promoting complex subunit
YLL023C	__________	+1.20	358386	430418	unknown	unknown
YLR328W	__________	-1.07	363068	338340	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YMR065W	KAR5______	+1.36	209463	284997	mating; nuclear fusion	coiled-coil membrane protein
YNL115C	__________	+1.81	168722	305562	unknown	unknown
YOL023W	IFM1______	-1.02	171282	168583	protein synthesis	translation initiation factor 2, mitochondrial
YOR233W	KIN4______	+1.10	417896	461282	unknown	protein kinase
YPL212C	PUS1______	+1.03	551013	568691	tRNA processing	pseudouridine synthase
YBL033C	RIB1______	+1.16	78177	90736	flavin biosynthesis	GTP cyclohydrolase II
YBR296C	PHO89_____	-1.29	193644	149879	phosphate metabolism	Na+/Pi symporter
YDL035C	GPR1______	+1.20	276243	331566	signaling, pheromone pathway	G-protein coupled receptor, coupled to Gpa2p
YDR165W	__________	-1.21	996053	820092	unknown	unknown
YDR534C	__________	-1.32	193310	146404	unknown	unknown
YFL028C	CAF16_____	-1.10	410492	373695	transport	ATP-binding cassette (ABC) family
YGL226W	__________	+1.03	217614	223752	unknown	unknown; similar to Neurospora cytochrome-c oxidase
YIL125W	KGD1______	+1.11	233460	257979	respiration	alpha-ketoglutarate dehydrogenase
YJR004C	SAG1______	-7.70	1277504	165940	mating	alpha-agglutinin
YKL224C	__________	+1.46	241270	351487	unknown	unknown; similar to Ybr301p, member of the PAU1 family
YML031W	NDC1______	+1.10	454420	497845	cytoskeleton	spindle pole body duplication
YMR260C	TIF11_____	-1.24	5580272	4503946	protein synthesis	translation initiation factor eIF1a
YNL317W	PFS2______	+1.13	329617	372129	mRNA processing	polyadenylation factor subunit
YOR057W	SGT1______	+1.16	367100	424788	mitosis (putative)	unknown; suppresses skp1 mutation
YPL035C	__________	+1.23	207007	253870	unknown	unknown
YPR130C	__________	-1.08	884236	821762	unknown	unknown
YBR106W	PHO88_____	+1.20	2824888	3379331	phosphate transport	regulator of Pho81
YCR043C	__________	-1.12	467072	418472	unknown	unknown
YDL225W	SHS1______	+1.03	411649	423118	cytokinesis	septin (putative)
YDR344C	__________	-1.08	117142	108648	unknown	unknown
YER045C	__________	+1.10	269639	295787	unknown	unknown
YGL035C	MIG1______	+1.08	200288	215555	glucose repression	transcriptional repressor
YGR146C	__________	+1.84	216203	397220	unknown	unknown
YHR159W	__________	-1.00	128805	128678	unknown	unknown
YJL035C	TAD2______	+1.25	315477	394588	tRNA processing	tRNA-specific adenosine deaminase subunit
YLL035W	GRC3______	-1.26	412786	328623	unknown	unknown; essential
YLR340W	RPP0______	-1.02	14174387	13854944	protein synthesis	ribosomal protein L10, acidic
YMR076C	PDS5______	+1.23	531834	652180	mitosis, sister chromatid cohesion	unknown
YNL127W	__________	+1.04	197200	205874	unknown	unknown; similar to Fus2p
YOL035C	__________	+1.09	414668	452946	unknown	unknown
YOR245C	__________	+1.24	350672	435100	unknown	unknown
YPL224C	MMT2______	+1.24	277849	344597	mitochondrial ion transport	transmembrane domain (2) protein
YBL045C	COR1______	+1.18	940281	1109777	oxidative phosphorylation	ubiquinol cytochrome-c reductase
YDL047W	SIT4______	+1.05	453860	477154	cell cycle	type 2A related protein phosphatase
YDR175C	__________	-1.10	233797	213133	unknown	unknown
YFL038C	YPT1______	+1.04	905199	944430	secretion	rab GTPase; ER-to-Golgi
YGL238W	CSE1______	-1.02	962930	942316	mitosis, chromosome segregation	kinetochore protein (putative)
YHL042W	__________	-1.00	146451	146444	unknown	unknown; similar to subtelomerically-encoded proteins
YIL137C	__________	+1.08	217972	234336	unknown	unknown; similar to aminopeptidases
YJR015W	__________	-1.16	439363	379667	unknown	unknown; similar to Sng1p and multidrug resistance proteins
YKR011C	__________	+1.55	179226	277240	unknown	unknown
YLR168C	(MSF1)____	+1.09	253319	275954	unknown	intramitochondrial protein sorting (putative)
YML041C	__________	+1.44	223182	321939	unknown	unknown
YMR272C	SCS7______	-1.05	601582	573621	fatty acid metabolism	ceramide hydroxylase
YNL329C	PEX6______	+1.11	366854	408378	peroxisome biogenesis	ATPase (putative)
YOR069W	VPS5______	+1.24	341728	424963	vacuolar protein targeting	sorting nexin family
YPL047W	__________	-1.18	794897	673977	unknown	unknown
YPR140W	__________	+1.22	307542	376021	unknown	unknown; similar to human Barth syndrome gene tafazzin
YBR117C	TKL2______	-1.37	272571	199227	pentose phosphate cycle	transketolase
YCR055C	__________	-1.36	713068	523921
YDL237W	__________	+1.10	422157	466091	unknown	unknown
YDR356W	NUF1______	-1.15	230792	201482	cytoskeleton	spindle pole body component
YER056C	FCY2______	-1.53	12576306	8207345	transport	purine-cytosine permease
YGL047W	__________	-1.20	357219	296640	unknown	unknown; similar to Plasmodium falciparum gametocytogenesis
YGR158C	MTR3______	-1.03	373404	361324	mRNA transport	nucleolar protein
YHR171W	APG7______	+1.25	145981	182576	autophagy	unknown; similar to ubiquitin-activating enzymes
YJL048C	__________	-1.08	310201	287956	unknown	unknown
YKL045W	PRI2______	+1.08	210886	228136	DNA replication	polymerase alpha 58 kD subunit (DNA primase)
YLL047W	__________	-1.35	162159	120216	unknown	unknown
YLR352W	__________	+1.20	146193	175764	unknown	unknown
YMR087W	__________	+1.78	299095	533305	unknown	unknown
YNL139C	RLR1______	+1.10	420675	460954	transcription	pleiotropic regulatory protein
YOL047C	__________	+1.19	135669	160970	unknown	unknown
YOR257W	CDC31_____	+1.00	589151	591514	cytoskeleton	spindle pole body component
YPL236C	__________	-1.11	161007	144778	unknown	unknown
YBL057C	__________	-1.13	609289	540124	unknown	unknown
YDL059C	RAD59_____	+1.19	140616	167431	DNA repair and recombination	unknown
YDR186C	__________	+1.44	187200	269111	unknown	unknown
YFL050C	ALR2______	-1.06	112195	106122	aluminum resistance	ion transporter (putative)
YGL250W	__________	+1.25	134300	167243	unknown	unknown
YHR002W	__________	-1.01	229454	226617	unknown	unknown; similar to Grave's disease protein; mitochondrial carrier (MCF) family
YIL149C	MLP2______	-1.23	758958	618473	nuclear protein targeting (putative)	unknown; similar to Mlp1p
YJR026W	__________	+1.27	3449112	4384180	unknown	unknown; similar to Hyr1p, Ybr244p, and glutathione peroxidases
YKR023W	__________	+1.00	304181	304191	unknown	unknown
YLR180W	SAM1______	+1.12	2216488	2475573	methionine metabolism	S-adenosylmethionine synthetase
YML051W	GAL80_____	+1.14	376820	428408	galactose regulation	transcriptional repressor
YMR284W	YKU70_____	+1.08	150879	163362	DNA repair	DNA binding; Ku70 homolog
YNR002C	FUN34_____	+1.22	165164	201143	unknown	unknown
YOR081C	__________	+1.21	260681	315391	unknown	unknown
YPL059W	GRX5______	+1.02	778976	795278	oxidative stres response	glutaredoxin
YPR152C	__________	-1.01	144241	143200	unknown	unknown; similar to Ykl012p
YBR129C	OPY1______	-1.08	387007	359576	mating	unknown
YCR067C	SED4______	+1.11	385526	427143	secretion	ER vesicle formation
YDR001C	NTH1______	+1.89	311738	588563	trehalose metabolism	alpha, alpha-trehalase
YDR366C	__________	-2.24	11262939	5031642	unknown	unknown
YER066W	__________	+1.07	276449	295038	unknown	unknown; similar to Cdc4p, has one WD (WD-40) domain
YGL059W	__________	+1.07	167534	178800	unknown	unknown; similar to Rat branched-chain alpha-ketoacid
YGR166W	KRE11_____	+1.59	354808	565786	cell wall biogenesis	regulates beta-1,6-glucan synthesis
YHR183W	GND1______	+1.71	2140554	3663637	pentose phosphate cycle	6-phosphogluconate dehydrogenase, decarboxylating
YJL060W	__________	+1.89	378238	713817	unknown	unknown; similar to kynurenine aminotransferase
YKL057C	NUP120____	+1.06	241249	256165	nuclear protein targeting	nuclear pore protein
YLL059C	__________	+1.02	107948	110049	unknown	unknown
YLR364W	__________	+1.28	120008	153645	unknown	unknown; similar to yeast glutaredoxin-like protein
YMR099C	__________	+2.72	1045395	2846957	unknown	unknown
YNL151C	RPC31_____	-1.38	1010669	733438	transcription	RNA polymerase III 31 kD subunit

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOL057W	__________	+1.15	558389	640118	unknown	unknown
YOR269W	PAC1______	+1.07	222756	237315	cytoskeleton (putative)	unknown; required in the absence of Cin8p
YPL248C	GAL4______	+1.03	133388	137722	galactose regulation	transcriptional activator
YBL069W	AST1______	-1.03	305513	296022	plasma membrane protein targeting	targets plasma membrane ATPase
YDL071C	__________	-1.12	121018	108209	unknown	unknown
YDR198C	__________	-1.08	265538	246038	unknown	unknown
YFL062W	COS4______	+2.64	1302577	3440744	unknown	unknown; similar to subtelomerically-encoded proteins
YGL262W	__________	-1.05	131399	125406	unknown	unknown
YHR013C	ARD1______	-1.39	1100014	791356	protein processing	protein N-acetyltransferase subunit
YIL160C	POT1______	-1.02	140505	137466	fatty acid metabolism	peroxisomal 3-oxoacyl CoA thiolase
YJR038C	__________	-1.18	131328	111716	unknown	unknown
YKR035C	__________	-1.09	574808	528379	unknown	unknown
YLR192C	HCR1______	-1.01	969170	962383	unknown	unknown; high copy suppressor of rpg1
YML062C	MFT1______	-1.15	415739	363001	mitochondrial protein targeting	mitochondrial targeting protein
YNR014W	__________	-1.22	264605	216306	unknown	unknown
YOR093C	__________	+1.02	352504	360320	unknown	unknown
YPL069C	BTS1______	+1.02	355075	361613	protein processing	geranylgeranyl diphosphate synthase
YPR160W	GPH1______	-1.06	115620	109242	glycogen metabolism	glycogen phosphorylase
YBR141C	__________	-1.09	261015	238513	unknown	unknown
YCR079W	__________	+1.18	158992	187208	unknown	protein phosphatase
YDR013W	__________	-1.16	178645	153442	unknown	unknown
YDR378C	LSM6______	-1.43	677354	473066	mRNA splicing (putative)	unknown; similar to snRNA-associated protein
YER075C	PTP3______	-1.03	335758	324494	signaling, pheromone and high osmolarity pathways	protein tyrosine phosphatase
YGL071W	RCS1______	-1.15	112126	97607	iron transport	transcriptional activator
YGR178C	PBP1______	+1.49	417865	620779	mRNA processing	poly(A)-binding protein binding protein
YHR195W	NVJ1______	+1.22	273460	332800	vacuolar protein targeting (putative)	unknown; Vac8p binding protein
YJL072C	__________	+1.01	209516	211146	unknown	unknown
YKL069W	__________	+1.08	297933	321644	unknown	unknown
YLR004C	__________	-1.07	289266	269365	unknown	unknown; similar to allantoate transport protein
YLR376C	__________	+1.18	122881	144476	unknown	unknown
YMR111C	__________	+1.42	150724	213772	unknown	unknown; similar to Msn1p
YNL163C	__________	-1.01	264146	261320	protein synthesis	translation elongation factor eEF4
YOL069W	NUF2______	-1.09	355341	326146	cytoskeleton	spindle pole body component
YOR281C	PLP2______	-1.07	816937	763573	unknown	unknown; similar to phosducins
YMR326C	__________	-1.05	120361	114334	unknown	unknown; similar to members of the PAU1 family
YBL081W	__________	-1.41	749634	533334	unknown	37% identity to Drosophila l not protein
YDL083C	RPS16B____	-1.51	12963941	8613213	protein synthesis	ribosomal protein S16B
YDR210W	__________	+1.79	841120	1502606	unknown	unknown
YFR006W	__________	+1.49	790272	1179974	unknown	unknown; similar to human X-pro dipeptidase
YGR011W	__________	+1.05	255550	267179	unknown	unknown
YHR024C	MAS2______	+1.18	418294	492281	protein processing	mitochondrial processing protease subunit
YJR050W	ISY1______	-1.09	317182	291310	mRNA splicing	unknown; interacts with spliceosome
YKR047W	__________	+1.04	1267060	1322595	unknown	unknown
YLR204W	QRI5______	-1.23	426249	346712	unknown	unknown
YML074C	NPI46_____	-1.19	3444557	2896810	protein folding	peptidyl-prolyl cis-trans isomerase
YMR305C	SCW10_____	+4.14	2218409	9173855	cell wall biogenesis	glucanase (putative)
YNR026C	SEC12_____	+1.42	376370	535478	secretion	ER-to-Golgi GDP/GTP exchange factor
YOR105W	__________	+1.33	372516	496352	unknown	unknown
YPL081W	RPS9A_____	-1.52	11960849	7867835	protein synthesis	ribosomal protein S9A
YPR172W	__________	+1.04	202593	209867	unknown	unknown
YBR153W	RIB7______	-1.03	488373	472446	flavin biosynthesis	HTP reductase
YCR090C	__________	-1.09	555788	511545	unknown	unknown
YDR025W	RPS11A____	-1.48	15743692	10624758	protein synthesis	ribosomal protein S11A
YDR390C	UBA2______	-1.56	562481	359515	protein degradation, ubiquitin-mediated	E1-like (ub.-activating) enzyme
YER087C	SBH1______	+1.16	977635	1136117	secretion	ER protein translocation complex subunit
YGL083W	SCY1______	-1.36	222278	162927	unknown	unknown
YGR190C	__________	-1.18	139610	118018	unknown	unknown
YHR207C	__________	+1.19	316776	377929	unknown	unknown
YJL084C	__________	-1.06	317254	299128	unknown	unknown
YKL081W	TEF4______	-1.23	3625936	2954544	protein synthesis	translation elongation factor EF-1gamma
YLR016C	__________	-1.18	291459	247921	unknown	unknown
YLR388W	RPS29A____	-1.53	7503657	4893970	protein synthesis	ribosomal protein S29A
YMR122C	__________	-1.50	237109	158392	unknown	unknown
YNL175C	NOP13_____	-1.42	1597231	1124350	unknown	unknown; nucleolar protein
YOL081W	IRA2______	-1.23	195758	159750	signaling, Ras pathway	GTPase-activating protein for Ras1p and Ras2p
YOR293W	RPS10A____	-1.67	15903873	9526368	protein synthesis	ribosomal protein S10A
YPL269W	KAR9______	-1.33	306173	230708	cytoskeleton	cytoplasmic microtubule orientation
YBL093C	ROX3______	+1.28	269789	345802	transcription	RNA polymerase mediator subunit
YDL095W	PMT1______	+1.47	385299	564583	protein glycosylation	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase
YDR218C	SPR28_____	-1.11	123447	110968	sporulation	septin-related protein
YFR018C	__________	-1.02	157127	153443	unknown	unknown; similar to human glutaminyl-peptide
YGR023W	MTL1______	-1.10	302717	275718	signaling (putative)	unknown; acts with Mid2p
YHR036W	__________	-1.70	508000	299275	unknown	unknown
YIR006C	PAN1______	-1.32	188387	142565	cytoskeleton and endocytosis	actin filament organization
YJR062C	NTA1______	-1.11	121369	109075	protein degradation	amino-terminal amidase
YKR059W	TIF1______	+1.17	12857262	14987618	protein synthesis	translation initiation factor eIF4A
YLR216C	CPR6______	+1.19	944071	1120398	protein folding (putative)	peptidyl-prolyl cus-trans isomerase
YMR316W	DIA1______	+2.07	466331	965576	pseudohyphal growth (putative)	unknown
YNR038W	DBP6______	-1.13	471164	415635	rRNA processing	RNA helicase, putative
YOR117W	RPT5______	+1.31	1122755	1474845	protein degradation	26S proteasome regulatory subunit
YPL093W	NOG1______	+1.07	938506	1006056	unknown	nucleolar G protein
YPR184W	GDB1______	-1.04	130114	125425	glycogen utilization	glycogen debranching enzyme
YBR164C	ARL1______	-1.10	896138	814572	secretion	ADP-ribosylation factor-like protein
YCR101C	__________	-1.04	141419	136342	unknown	unknown; similar to Pep1p, probably represents a fragmented coding region of a pseudogene
YDR035W	ARO3______	+1.04	816665	851802	aromatic amino acid biosynthesis	DAHP synthase
YDR402C	DIT2______	-1.11	151234	136389	sporulation, spore wall biogenesis	synthesizes dityrosine
YER097W	__________	-1.14	130813	114963	unknown	unknown
YGL095C	VPS45_____	+1.27	320715	406128	vacuolar protein targeting	membrane protein
YGR202C	PCT1______	+1.05	353688	370998	phospholipid metabolism	cholinephosphate cytidylyltransferase
YHR216W	IMD2______	-1.14	4329336	3795775	purine biosynthesis	IMP dehydrogenase
YJL096W	MRPL49____	-1.23	547698	446760	protein synthesis	ribosomal protein, mitochondrial L49
YKL093W	MBR1______	-1.19	266728	224297	mitochondrial biogenesis	unknown
YLR028C	ADE16_____	+1.53	450238	689762	purine biosynthesis	5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) transformylase/IMP cyclohydrolase
YLR400W	__________	-1.30	376287	289874	unknown	unknown
YMR134W	__________	-1.23	385125	314120	unknown	unknown
YNL187W	__________	-1.01	130242	129130	unknown	unknown
YOL093W	__________	-1.20	614447	512084	unknown	unknown
YOR304W	ISW2______	-1.07	925134	861369	unknown	unknown; similar to Drosophila nucleosome remodeling factor ISW1
YPL281C	ERR2______	-1.55	219458	141623	unknown	unknown; similar to enolase
YAL013W	DEP1______	-1.35	215818	160016	phospholipid metabolism	regulator

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YBR177C	EHT1______	-1.70	245472	144383	unknown	alcohol acyl transferase (putative)
YCRX07W	__________	-1.21	121430	100143
YDR048C	__________	-1.08	100650	93140	unknown	unknown
YDR415C	__________	-1.47	282497	191588	unknown	unknown; similar to bacterial leucyl aminopeptidase
YER110C	KAP123____	-1.26	440812	350914	nuclear protein targeting	beta-karyopherin
YGL108C	__________	+1.06	212981	225569	unknown	unknown
YGR215W	__________	-1.03	337335	325995	unknown	unknown
YIL012W	__________	-1.10	112439	102067	unknown	unknown
YJL109C	__________	-1.09	489530	448307	unknown	unknown
YKL105C	__________	+1.52	181590	276749	unknown	unknown
YLR039C	RIC1______	+1.00	125282	125300	transcription	(putative) transcriptional regulator of rRNA and proteins
YLR411W	CTR3______	-1.08	91624	84689	transport	copper transporter
YMR146C	TIF34_____	-1.04	1957391	1885218	protein synthesis	translation initiation factor eIF3, P39 subunit
YNL200C	__________	+1.15	162387	187237	unknown	unknown
YOL104C	NDJ1______	+1.18	152833	180745	meiosis, chromosome segregation	unknown
YOR316C	COT1______	+1.24	288378	356258	Co2+ ion homeostasis	mitochondrial membrane protein
YPR011C	__________	+1.26	264768	334766	unknown	unknown; similar to human Grave's disease carrier protein
YBL104C	__________	-1.19	250930	211304	unknown	morphology (putative)
YCL011C	GBP2______	+1.14	438464	500370	unknown	telomere-associated protein (putative)
YDL108W	KIN28_____	+1.03	382473	393165	transcription	protein kinase; also TFIIH subunit
YDR231C	COX20_____	+1.25	262908	327677	respiration	req. for cytochrome oxidase assembly
YEL012W	UBC8______	+1.40	208811	292359	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YFR031C	SMC2______	+1.26	14155301	17775314	mitosis, chromosome condensation and segregation	unknown
YGR034W	RPL26B____	-1.55	15342383	9922709	protein synthesis	ribosomal protein L26B
YHR048W	__________	-1.33	235855	176793	unknown	major facilitator superfamily
YIR018W	YAP5______	-1.14	154081	134780	transcription	basic leu zipper transcription factor
YJR075W	HOC1______	+1.12	485285	545174	protein glycosylation	putative mannosyltransferase
YKR072C	SIS2______	-1.05	719592	687772	cell cycle and ion homeostasis	unknown
YML098W	TAF19_____	+1.07	396324	424390	transcription	TFIID 19 kD subunit
YNL012W	SPO1______	-1.03	134503	131070	meiosis (spor.)	transcriptional regulator
YNR051C	BRE5______	-1.09	814925	746720	secretion (putative)	unknown; brefeldin A sensitive
YOR130C	ORT1______	-1.06	255162	240449	arginine biosynthesis	amino acid transporter
YPL106C	SSE1______	+1.39	2173910	3022521	calmodulin signaling	HSP70 family
YPR197C	__________	+1.51	162713	245972	unknown	unknown
YAL025C	MAK16_____	-1.34	831309	620266	dsRNA virus propagation	unknown; essential gene
YBR189W	RPS9B_____	-1.45	11674933	8039807	protein synthesis	ribosomal protein S9B
YCRX19W	__________	-1.25	250933	201473
YDR060W	__________	-1.25	790166	631722	unknown	unknown; similar to human CCAAT-binding protein (GB:Z49209)
YDR427W	RPN9______	+1.09	818905	896046	protein degradation	26S proteasome regulatory subunit
YER121W	__________	-1.09	195344	179375	unknown	unknown
YGL120C	PRP43_____	-1.22	390354	321124	mRNA splicing	spliceosome disassembly factor; RNA helicase
YGR227W	DIE2______	-1.04	149635	144400	glucosylation?	glucosyltransferase
YIL023C	__________	+1.61	293125	472972	unknown	unknown; similar to Atx2
YJL121C	RPE1______	+1.25	1218867	1517792	pentose phosphate cycle	Ribulose-5-phosphate 3-epimerase
YKL117W	SBA1______	+1.03	3394938	3491756	protein folding	Hsp90 associated co-chaperone
YLR051C	__________	-1.25	480288	385728	unknown	unknown
YLR423C	APG17_____	+1.64	153186	250894	unknown	unknown; similar to human cytokeratin 9 (SP:P35527)
YMR157C	__________	-1.05	310955	295183	unknown	unknown
YNL212W	VID27_____	+1.29	435059	560880	vacuolar protein targeting (putative)	unknown
YOL116W	MSN1______	-1.00	256775	255894	nutrient sensing	transcriptional activator
YOR328W	PDR10_____	+1.03	295429	303599	transport	ATP-binding cassette (ABC) family
YPR023C	EAF3______	+1.30	557771	725752	unknown	acetyltrasnferase complex component (putative)
YBR003W	COQ1______	+1.08	259241	280172	ubiquinone biosynthesis	exaprenyl pyrophosphate synthetase
YCL024W	KCC4______	-1.06	111455	105426	bud growth	protein kinase
YDL120W	YFH1______	+1.24	424219	525269	iron homeostasis, mitochondrial	frataxin homolog
YEL023C	__________	+1.11	108142	119998	unknown	unknown
YFR040W	SAP155____	-1.09	475853	436126	cell cycle	Sit4p-associated protein
YGR041W	BUD9______	+1.34	293606	392073	bud site selection, bipolar	unknown
YHR058C	MED6______	-1.05	243437	230830	transcription	RNA polymerase II mediator subunit
YIR028W	DAL4______	-1.03	155984	151049	allantoin utilization	allantoin permease
YJR088C	__________	-1.44	623004	433440	unknown	unknown
YKR084C	HBS1______	+1.15	409654	469952	unknown	unknown; similar to translation elongation factor EF-1alpha
YLR239C	__________	-1.11	253660	227756	unknown	unknown; similar to E. coli LipB protein which is
YML108W	__________	+1.02	371298	378420	unknown	unknown
YNL024C	__________	-1.31	221045	168622	unknown	unknown
YNR063W	__________	+1.18	129766	153305	unknown	unknown; similar to transcription factors, has Zn[2]-Cys[6]
YOR142W	LSC1______	+1.28	634460	811750	TCA cycle	succinyl-CoA ligase alpha subunit
YPL118W	MRP51_____	-1.02	619967	608149	protein synthesis	ribosomal protein, mitochondrial small subunit
YBR201W	DER1______	+1.58	147730	233547	protein degradation, ER	unknown
YDR072C	IPT1______	+1.59	480298	764258	sphingolipid biosynthesis	inositolphosphotransferase 1
YDR439W	LRS4______	+1.00	231091	231900	silencing (rDNA) (putative)	unknown
YER133W	GLC7______	+1.21	903160	1094720	glycogen metabolism	protein phosphatase
YGL132W	__________	+1.00	126380	126665	unknown	unknown
YGR239C	PEX21_____	-1.06	288815	273145	peroxisome biogenesis (putative)	unknown, "peroxin"
YIL035C	CKA1______	-1.04	604163	579913	cell cycle (putative)	casein kinase II, catalytic subunit
YJL133W	MRS3______	-1.03	409858	396215	transport	mitochondrial carrier
YKL129C	MYO3______	+1.10	118987	130610	cytoskeleton	myosin, class I
YLR063W	__________	-1.11	119156	106915	unknown	unknown
YLR433C	CNA1______	-1.19	303784	256148	signaling	calcineurin catalytic A subunit
YMR168C	CEP3______	+1.00	288040	289431	mitosis	kinetochore protein complex, 71 KD subunit
YNL224C	__________	+1.19	289829	343843	unknown	unknown
YOL128C	__________	-1.06	224960	212993	unknown	protein kinase
YOR340C	RPA43_____	-1.45	1207520	834837	transcription	RNA polymerase I 36 kD subunit
YPR035W	GLN1______	+2.09	3464143	7255923	glutamine biosynthesis	glutamine synthetase
YBR013C	__________	+1.21	186809	226147	unknown	unknown
YCL036W	__________	-1.63	301916	184780	unknown	unknown
YDL131W	LYS21_____	-1.50	1405840	937940	lysine biosynthesis	homocitrate synthase
YDR255C	__________	+1.12	157418	175806	unknown	unknown
YEL035C	UTR5______	-1.11	111593	100489	unknown	unknown
YFR052W	RPN12_____	-1.04	801713	771734	protein degradation	26S proteasome regulatory subunit
YGR053C	__________	-1.06	143078	134839	unknown	unknown
YHR069C	RRP4______	-1.03	567233	552518	rRNA processing	3'->5' exoribonuclease
YIR040C	__________	+1.36	136875	185714	unknown	unknown; similar to Yil174p, Yil175p, and Ycr103p, member of
YJR099W	YUH1______	+1.17	290324	340571	protein degradation, ubiquitin-mediated	ubiquitin-specific protease
YKR096W	__________	+1.02	97006	99248	unknown	unknown; similar to aldehyde dehydrogenase
YLR251W	__________	+1.24	145368	180694	unknown	unknown; similar to mouse MPV17 protein
YML119W	__________	+1.03	392912	405745	unknown	unknown
YNR075W	COS10_____	+1.07	117453	125323	unknown	unknown; similar to subtelomerically-encoded proteins
YOR152C	__________	+1.86	208563	387197	unknown	unknown
YPL130W	SPO19_____	-1.19	124829	104762	sporulaiton	GPI-protein, meiosis-specific

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YAL045C	__________	+1.31	259965	339518	unknown	unknown
YBR213W	MET8______	-1.03	152188	147418	sulfate assimilation	siroheme synthase
YDR084C	__________	+1.14	249002	282728	unknown	unknown
YDR451C	__________	+1.36	174800	237123	unknown	unknown; similar to Yox1p, which binds Leu-tRNA (SP:P34161)
YER143W	DDI1______	+1.13	237252	267597	unknown	unknown; induced by DNA damage
YGL144C	__________	-1.03	124928	121819	unknown	unknown
YGR251W	__________	-1.13	342256	302558	unknown	unknown
YIL047C	SYG1______	+1.18	370258	438329	signaling (putative)	pheromone pathway
YJL145W	__________	+1.07	582010	620961	unknown	unknown
YKL141W	SDH3______	+1.40	421632	590117	TCA cycle, oxidative phosphorylation	succinate dehydrogenase cytochrome b
YLR075W	RPL10_____	-1.02	15592273	15241482	protein synthesis	ribosomal protein L10
YLR445W	__________	-1.17	214183	183647	unknown	unknown
YMR178W	__________	+1.05	635306	667688	unknown	unknown
YNL236W	SIN4______	+1.05	364038	383330	transcription	RNA polymerase II mediator subunit
YOL140W	ARG8______	-1.21	195282	161098	arginine biosynthesis	acetylornithine aminotransferase
YOR350C	MNE1______	+1.23	203739	249657	unknown	unknown; similar to Lucilia illustris mitochondria cytochrome oxidase
YPR047W	MSF1______	+1.16	175023	203375	protein synthesis	tRNA synthetase, mitochondrial, phenylalanyl, subunit
YBR025C	__________	-1.24	2844118	2286274	unknown	unknown
YCL048W	__________	-1.08	122718	113164	unknown	unknown; similar to Ecm33p and Sps2p
YDL142C	CRD1______	+1.20	232621	278654	lipid biosynthesis	cardiolipin synthase
YDR263C	DIN7______	-1.05	209298	198745	DNA repair (putative)	DNA damage-inducible
YEL047C	__________	+1.51	357783	541605	unknown	putative fumarate reductase
YGR065C	VHT1______	-1.06	309503	291642	transport	H+-biotin symporter
YHR079C	SAE3______	+1.13	315397	357427	meiosis, recombination	unknown
YJR111C	__________	+1.06	208869	221814	unknown	unknown
YLR260W	LCB5______	+1.40	244789	343228	sphingolipid metabolism	long chain base kinase
YML131W	__________	-1.16	323431	278913	unknown	unknown
YNL046W	__________	+1.58	412324	653402	unknown	unknown
YOR164C	__________	-1.13	835620	736463	unknown	unknown
YPL142C	__________	-1.38	14563226	10545156	unknown	unknown
YAL059W	ECM1______	-1.57	731282	466184	cell wall biogenesis	unknown
YBR225W	__________	+1.15	145362	167314	unknown	unknown
YDR096W	GIS1______	-1.03	154581	150502	unknown	unknown
YDR463W	STP1______	+1.19	283270	337836	tRNA splicing	transcription
YER153C	PET122____	-1.09	105543	97056	protein synthesis	translation activator of COX3
YGL156W	AMS1______	+1.13	187777	211574	cell wall catabolism	vacuolar alpha-mannosidase
YGR263C	__________	-1.02	201712	198485	unknown	unknown
YIL059C	__________	+1.03	226847	232845	unknown	unknown
YJL157C	FAR1______	-1.10	253530	230124	cell cycle	Cdc28p kinase inhibitor
YKL153W	__________	+1.04	15853810	16451074	unknown	unknown
YLR087C	__________	-1.02	192786	188393	unknown	unknown
YLR457C	NBP1______	+1.14	172138	196015	unknown	Nap1p-binding protein
YMR190C	SGS1______	-1.03	121722	118638	mitosis, chromosome segregation	putative DNA helicase
YNL248C	RPA49_____	+1.05	105858	111416	transcription	RNA polymerase I 46 kD subunit
YOL152W	FRE7______	-1.76	294749	167305	unknown	unknown; similar to Fre1p and Fre2p
YOR362C	PRE10_____	+1.19	1287670	1531904	protein degradation	20S proteasome subunit C1 (alpha7)
YPR059C	__________	+1.03	489120	504671	unknown	unknown
YBR037C	SCO1______	-1.05	223198	212708	respiration	Cox1p and Cox2p stability (putative)
YCL060C	__________	-1.15	105625	91555
YDL154W	MSH5______	-1.08	106846	98749	DNA repair	MutS homolog; also recombination
YDR275W	__________	-1.15	310927	271241	unknown	unknown
YGR077C	PEX8______	+1.07	278375	298680	peroxisome biogenesis	unknown
YHR091C	MSR1______	-1.15	372250	323509	protein synthesis	tRNA synthetase, arginyl
YJR123W	RPS5______	-1.17	15577186	13311692	protein synthesis	ribosomal protein S5
YLR271W	__________	-1.43	475051	331470	unknown	unknown; similar to retrovirus-related protease
YMR010W	__________	+1.34	347148	466753	unknown	unknown
YNL056W	__________	-1.08	583281	537919	unknown	unknown
YOR176W	HEM15_____	+1.38	527536	728352	heme biosynthesis	ferrochelatase (protoheme ferrolyase)
YPL154C	PEP4______	+2.46	1207881	2977171	protein degradation	vacuolar aspartyl protease
YAR002W	NUP60_____	-1.08	468315	434443	nuclear protein targeting	nuclear pore protein
YBR237W	PRP5______	+1.10	147507	161554	mRNA splicing	RNA helicase
YDR106W	ARP10_____	+1.14	114206	130199	cytoskeleton (putative)	actin-related protein
YDR475C	__________	-1.14	107872	94548	unknown	unknown
YER163C	__________	+1.50	312671	468469	unknown	unknown
YGL168W	__________	+1.25	617468	769333	unknown	unknown
YGR275W	RTT102____	+1.02	498134	510420	transposition (putative)	unknown; regulator of Ty1 transposition
YIL069C	RPS24B____	-1.32	15339598	11627245	protein synthesis	ribosomal protein S24B
YJL169W	__________	-1.39	617259	444636	unknown	unknown
YKL165C	MCD4______	+1.47	412490	604534	sporulation	morphogenesis checkpoint
YLR099C	ICT1______	+2.40	304310	729119	copper ion homeostasis (putative)	unknown
YNL260C	__________	+1.02	287196	293107	unknown	unknown
YOL164W	__________	+1.07	202946	218058	unknown	unknown; similar to Pseudomonas sp. alkyl sulfatase
YOR374W	ALD4______	+1.44	312669	451659	ethanol utilization	mitochondrial aldehyde dehydrogenase
YPR071W	__________	+1.00	111738	112136	unknown	unknown; similar to Yil029p (GB:Z49219)
YBR049C	REB1______	-1.25	361371	288422	transcription	transcription factor
YCL075W	__________	-1.08	95551	88152	unknown	encoded by Ty5-1
YDL166C	__________	-1.21	726511	602543	unknown	unknown
YDR287W	__________	+1.15	229018	263218	unknown	unknown; similar to inositol monophosphatase (SP:P29218,
YEL070W	__________	-1.02	112722	109974	unknown	unknown; similar to E. coli D-mannonate oxidoreductase
YGR089W	__________	+1.02	211023	215133	unknown	unknown; similar to human desmoplakin I PIR:A35536
YHR103W	SBE22_____	-1.00	186342	185765	bud growth	unknown
YJR135C	MCM22_____	-1.04	214325	206685	mitosis, chromosome segregation	unknown
YLR283W	__________	+1.06	221692	234844	unknown	unknown
YMR022W	QRI8______	+1.34	597504	802815	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YNL068C	FKH2______	-1.24	272158	220059	unknown	unknown; similar to Drosophila forkhead
YOR188W	MSB1______	-1.06	594501	559386	polarized growth	unknown
YPL166W	__________	+1.05	119164	125634	unknown	unknown
YAR027W	__________	+1.92	316231	608608	unknown	unknown; similar to subtelomerically-encoded proteins
YBR249C	ARO4______	-1.19	1619635	1362307	aromatic amino acid biosynthesis	2-dehydro-3-deoxyphosphoheptonate aldolase
YDR118W	APC4______	+1.08	173751	187489	cell cycle	anaphase-promoting complex subunit
YDR487C	RIB3______	+1.27	713053	902561	flavin biosynthesis	3,4-dihydroxy-2-butanone 4-phosphate synthase
YER173W	RAD24_____	+1.09	202705	221948	DNA repair; cell cycle	exonuclease, putative; checkpoint protein
YGL180W	APG1______	-1.03	109272	105704	autophagy	protein kinase
YGR287C	__________	+1.03	169773	174580	unknown	unknown; similar to alpha-D-glucosidase (maltase) (YGR287C
YIL080W	__________	-1.26	288095	229000	unknown	unknown
YJL181W	__________	-1.12	140466	124939	unknown	unknown
YKL177W	__________	-1.90	197535	103860	unknown	unknown
YLR111W	__________	-1.31	123486	94513	unknown	unknown
YMR213W	CEF1______	-1.09	261837	239864	unknown	unknown; similar to S. pombe cdc5+
YNL272C	SEC2______	-1.02	511011	501549	secretion	GDP/GTP exchange factor for Sec4p

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YOR010C	TIR2______	-1.60	612402	383379	unknown	unknown; induced by cold shock
YOR386W	PHR1______	-1.04	146359	140193	DNA repair	deoxyribodipyrimidine photolyase
YPR083W	__________	+1.04	204811	212782	unknown	unknown; similar to Halobacterium holobium cell surface
YBR061C	__________	-1.24	505545	408318	unknown	unknown; similar to Ctr86p and E. coli ftsJ
YCLX11W	__________	+1.12	718761	804584
YDL178W	AIP2______	+1.10	535507	589823	unknown	actin interacting protein
YDR299W	BFR2______	-1.36	544223	401131	secretion	unknown
YER004W	__________	+1.47	862099	1266911	unknown	unknown
YGR101W	__________	+1.09	191088	209044	unknown	unknown
YHR115C	__________	+1.18	565005	668778	unknown	unknown
YJR147W	HMS2______	-1.67	326799	196111	pseudohyphal growth	transcription factor
YLR294C	__________	+1.48	552068	819294	unknown	unknown
YNL080C	__________	+1.05	308465	322858	unknown	unknown
YOR198C	BFR1______	+1.33	1296231	1724379	secretion	unknown
YPL178W	CBC2______	-1.53	1013583	661518	meiosis, recombination	nuclear cap-binding protein complex small subunit
YAR047C	__________	-1.12	112426	99988	unknown	unknown
YBR261C	__________	-1.03	483431	470280	unknown	unknown
YDR130C	FIN1______	+1.12	226600	252791	cell cycle (putative)	intermediate filament protein
YDR499W	LCD1______	+1.03	199066	204207	unknown	unknown
YER185W	__________	+1.35	126816	170724	unknown	unknown; similar to Rtm1p
YGL192W	IME4______	-1.00	144873	144777	meiosis	transcription factor
YIL091C	__________	-1.18	514289	437583	unknown	unknown
YJL193W	__________	-1.00	272938	272710	unknown	unknown; similar to Sly41p and to triose
YKL189W	HYM1______	+1.25	208095	260877	unknown	unknown; similar to Aspergillus nidulans hymA which is
YLR123C	__________	-1.01	104113	102742	unknown	unknown; similar to class I family of aminoacyl-tRNA
YMR224C	MRE11_____	+1.14	167269	191230	meiosis, recombination	ds break formation complex subunit
YNL284C	MRPL10____	-1.01	469875	464359	protein synthesis	ribosomal protein, mitochondrial L10
YOR022C	__________	+1.02	146185	149656	unknown	unknown
YPR095C	SYT1______	+1.06	111409	118488	unknown	unknown; similar to S. typhimurium T1pA alpha-helical
YBR073W	RDH54_____	+1.39	357780	496913	meiosis	helicase
YCR011C	ADP1______	+1.23	317403	391697	transport	(putative) ATP-dependent permease
YDL190C	UFD2______	+1.11	251201	277596	protein degradation, ubiquitin-mediated	unknown; may influence multi-Ub chain topology
YDR311W	TFB1______	+1.05	254553	266109	transcription	TFIIH 75 kD subunit
YER014W	HEM14_____	+1.37	175075	239819	heme biosynthesis	protoporphyrinogen oxidase
YGR111W	__________	+1.38	398483	551385	unknown	unknown; similar to southern house mosquito carboxylesterase
YHR127W	HSN1______	-1.04	631083	608877	unknown	suppresses SEC4 dominant negative mutant
YJR159W	SOR1______	+1.18	200286	235497	sorbitol metabolism	sorbitol dehydrogenase
YLR306W	UBC12_____	+1.00	145409	146003	protein degradation, ubiquitin-mediated	E2 ub.-conjugating enzyme
YNL092W	__________	+1.07	123222	131377	unknown	unknown
YOR210W	RPB10_____	-1.31	824230	628426	transcription	shared subunit of RNA polymerases I, II, and III
YPL189W	GUP2______	-1.09	121610	111079	glycerol utilization	glycerol transporter (putative)
YBL010C	__________	-1.15	218235	189018	unknown	unknown
YBR273C	__________	-1.06	363038	341272	unknown	unknown
YDL012C	__________	+1.01	320333	322098	unknown	unknown
YDR142C	PEX7______	+1.13	182007	205541	peroxisome biogenesis	import receptor
YDR511W	__________	-1.21	235174	194859	unknown	unknown
YFL010W	AUA1______	+1.27	929486	1183215	amino acid uptake	ammonia regulation of GAP1 activity
YGL204C	__________	-1.40	358003	255345	unknown	unknown
YIL102C	__________	-1.20	122840	102662	unknown	unknown
YJL205C	NCE101____	-1.13	214978	190432	secretion, non-classical	unknown
YKL201C	MNN4______	-1.12	100016	89087	protein glycosylation	phosphatidylinositol kinase homolg
YLR135W	__________	-1.05	124436	118212	unknown	unknown
YML010W	SPT5______	-1.21	387466	320244	transcription	elongation factor
YMR237W	__________	+1.37	384026	525091	unknown	unknown; similar to Chs6p/Csd3p
YNL294C	__________	+1.79	293121	525259	unknown	unknown
YOR034C	AKR2______	+1.04	220374	228518	endocytosis of Ste3p	unknown
YPL012W	__________	-1.24	1209694	976579	unknown	unknown
YPR107C	YTH1______	+1.16	294715	343106	mRNA 3'-end processing	cleavage/polyadenylation specificity factor subunit
YBR084W	MIS1______	-1.12	786735	700792	folate metabolism	C1-tetrahydrofolate synthase
YCR022C	__________	-1.11	133676	120734	unknown	unknown
YDL202W	MRPL11____	-1.06	203985	192992	protein synthesis	ribosomal protein, mitochondrial L11
YDR321W	ASP1______	-1.04	1423615	1373014	asparagine utilization	L-asparaginase I
YER024W	__________	-1.15	210977	183044	unknown	unknown; similar to Yat1p
YGL012W	ERG4______	+1.13	1039811	1170216	sterol metabolism	sterol C-24 reductase
YGR123C	PPT1______	-1.46	636126	434901	unknown	protein phosphatase
YHR138C	__________	+2.08	207102	430464	unknown	unknown
YJL012C	PHM3______	-1.92	700916	365797	phosphate metabolism (putative)	polyphosphate synthetase (putative)
YKL011C	CCE1______	-1.05	218460	207656	tRNA processing	cruciform cutting endonuclease
YLL012W	__________	-1.16	417869	360758	unknown	unknown; similar to human triacylglycerol lipase
YLR317W	__________	-1.04	120839	116517	unknown	unknown
YMR054W	STV1______	+2.31	209682	485052	vacuolar acidification	vacuolar H+-ATPase V0 domain 102 KD subunit
YNL104C	LEU4______	+1.77	812008	1436022	leucine biosynthesis	2-isopropylmalalate synthase
YOL012C	HTA3______	+1.01	820166	832241	chromatin structure	histone-related
YOR222W	ODC2______	+1.77	303601	536823	unknown	unknown; similar to mitochondrial ADP/ATP carrier proteins
YPL201C	__________	-1.07	135847	126831	unknown	unknown
YAR071W	PHO11_____	-1.67	1242491	744405	phosphate metabolism	secreted acid phosphatase
YBL022C	PIM1______	-1.01	274426	271747	respiration	mitochondrial ATP-dependent protease
YBR285W	__________	+1.06	100029	106324	unknown	unknown
YDL024C	DIA3______	+1.12	112026	125706	pseudohyphal growth (putative)	unknown
YDR154C	__________	+1.79	5551932	9960626	unknown	unknown
YDR523C	SPS1______	+1.06	154915	164473	meiosis	protein kinase
YFL018C	LPD1______	+1.04	226787	235288	TCA cycle	dihydrolipoamide dehydrogenase
YGL216W	KIP3______	+1.02	152536	155450	mitosis	kinesin related protein
YHL020C	OPI1______	-1.03	1031241	996663	phospholipid metabolism	negative regulator of phospholipid biosynthesis
YIL114C	POR2______	-1.27	167475	132140	mitochondrial transport	porin, anion channel
YJL217W	__________	-2.37	1564244	661355	unknown	unknown
YKL213C	DOA1______	+1.31	345711	453473	protein degradation, ubiquitin-mediated	unknown
YLR147C	SMD3______	-1.26	255334	202752	mRNA splicing	core snRNP protein
YML021C	UNG1______	-1.06	351361	330928	DNA repair	uracil DNA glycosylase
YMR250W	GAD1______	+1.29	152334	196884	glutamate metabolism	glutamate decarboxylase
YNL306W	__________	-1.18	243873	206413	protein synthesis	ribosomal protein, mitochondrial small subunit
YOR046C	DBP5______	-1.10	1547153	1411229	mRNA export	RNA helicase
YPL024W	NCE4______	-1.03	290695	283423	cell separation	negative regulator of CTS1 expression
YPR119W	CLB2______	+1.19	222883	265410	cell cycle	G2/M cyclin
YBR095C	__________	+1.18	208287	245967	unknown	unknown; similar to Drosophila cyclin B
YCR032W	BPH1______	+1.15	280540	323230	transport	acetic acid export pump (putative)
YDL214C	__________	+1.06	97660	103935	unknown	protein kinase
YDR333C	__________	+1.10	327814	361754	unknown	unknown
YER036C	__________	-1.33	960596	721345	unknown	unknown; similar to members of the ATP-binding cassette
YGL024W	__________	-1.10	114735	104522	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YGR135W	PRE9______	+1.04	1213275	1257302	protein degradation	20S proteasome subunit Y13 (alpha3)
YHR148W	IMP3______	-1.29	533397	413826	rRNA processing	U3 snoRNP protein
YJL024C	APS3______	-1.02	289818	283894	vacuolar protein targeting	AP-3 complex subunit
YKL023W	__________	-1.01	269874	267439	unknown	unknown
YLL024C	SSA2______	+1.38	3096642	4278844	ER and mitochondrial translocation	cytosolic HSP70
YLR329W	REC102____	-1.10	139524	127296	meiosis, recombination	ds break formation complex subunit
YMR066W	SOV1______	+1.25	134921	168897	respiration (putative)	unknown; synthesis of Var
YNL116W	__________	-1.13	581715	516645	unknown	unknown
YOL024W	__________	-1.21	153245	126176	unknown	unknown
YOR234C	RPL33B____	-1.52	7188844	4736521	protein synthesis	ribosomal protein L33B
YPL213W	LEA1______	-1.04	375293	362018	mRNA splicing	U2 snRNP protein
YBL034C	STU1______	-1.06	152517	143919	mitosis	spindle component
YBR297W	MAL33_____	-1.03	149291	144830	maltose metabolism	regulator of maltose metabolic genes
YDL036C	__________	-1.22	289474	237088	unknown	unknown; similar to Rib2p
YDR166C	SEC5______	+1.00	89869	90187	secretion	exocyst complex subunit
YDR535C	__________	-1.05	101108	96240	unknown	unknown
YFL029C	CAK1______	+1.17	266472	312223	cell cycle	protein kinase
YGL227W	VID30_____	-1.25	650067	520975	vacuolar protein targeting (putative)	unknown; TOR inhibitor
YHL031C	GOS1______	-1.05	337584	320510	secretion	Golgi SNARE
YIL126W	STH1______	-1.10	99615	90777	chromatin structure	chromatin remodeling complex subunit
YJR005W	APL1______	+1.05	225318	237289	secretion	vesicle coat component
YKL225W	__________	+1.00	94743	94789	unknown	unknown
YML032C	RAD52_____	+1.25	245351	307679	DNA repair and recombination	Rad51p cofactor
YMR261C	TPS3______	+1.20	304668	364289	trehalose utilization	alpha,alpha-trehalose-phosphate synthase
YNL318C	HXT14_____	-1.12	112410	100714	transport	hexose permease
YOR058C	ASE1______	+1.01	286279	288774	mitosis	spindle midzone component
YPL036W	PMA2______	+1.07	448089	480578	H+ homeostasis	plasma membrane H+-ATPase
YPR131C	NAT3______	+1.14	330270	378026	protein processing	protein N-acetyltransferase
YBR107C	IML3______	+1.44	165123	238338	mitosis, chromosome segregation (putative)	unknown
YCR044C	PER1______	+1.06	339314	360313	protein processing (putative)	unknown
YDL226C	GCS1______	+1.10	710638	782867	secretion	vesicle transport; GAP for ARF
YDR345C	HXT3______	-1.03	3868216	3751865	transport	hexose permease
YER046W	__________	-1.10	239761	218391	unknown	unknown
YGL036W	MTC2______	+1.24	675920	837153	unknown	unknown
YGR147C	NAT2______	+1.08	242873	262261	protein processing	N-acetyltransferase for N-terminal methionine
YHR160C	PEX18_____	+1.03	140340	145246	peroxisome biogenesis (putative)	unknown, "peroxin"
YJL036W	SNX4______	+1.13	233472	264560	protein targeting (putative)	unknown; similar to human sorting nexins
YKL034W	__________	+1.20	193170	231941	unknown	unknown
YLL036C	PRP19_____	-1.20	282160	235462	mRNA splicing; DNA repair	non-snRNP spliceosome component
YLR341W	__________	+1.10	118101	129361	unknown	unknown
YMR077C	__________	+1.57	257555	404969	unknown	unknown; similar to Snf7p
YNL128W	TEP1______	-1.09	217106	198625	unknown	protein phosphatase
YOL036W	__________	+1.03	388760	398852	unknown	unknown
YOR246C	__________	-1.24	583782	472127	unknown	unknown
YPL225W	__________	+1.06	1427346	1512200	unknown	unknown
YBL046W	__________	-1.00	242333	241676	unknown	unknown
YDL048C	STP4______	+1.33	281274	373019	tRNA splicing	unknown
YDR176W	NGG1______	+1.03	151449	156633	chromatin structure	histone acetyltransferase complex subunit
YFL039C	ACT1______	+1.50	5514431	8297489	cytoskeleton	actin
YGL239C	__________	+1.15	175550	202270	unknown	unknown
YHL043W	ECM34_____	+1.12	160369	179599	cell wall biogenesis	unknown
YIL138C	TPM2______	+1.13	313618	355179	cytoskeleton	tropomyosin
YJR016C	ILV3______	-1.23	1243254	1012641	isoleucine and valine biosynthesis	dihydroxyacid dehydratase
YKR012C	__________	+2.97	196352	582870	unknown	unknown
YLR169W	__________	+1.11	87987	97949	unknown	unknown
YML042W	CAT2______	+1.10	121688	134022	fatty acid transport	carnitine O-acetyltransferase
YNL330C	RPD3______	-1.06	526925	498571	chromatin structure	histone deacetylase
YOR070C	GYP1______	+1.00	132153	132529	signaling	GTPase-activating protein for Ypt1p
YPL048W	CAM1______	-1.17	2520357	2145380	protein synthesis	translation elongation factor EF-1gamma
YPR141C	KAR3______	-1.07	373011	347636	mating; nuclear fusion; mitosis	kinesin-like protein
YBR118W	TEF2______	+1.17	15752962	18507929	protein synthesis	translation elongation factor EF-1 alpha
YCR056W	__________	-1.06	1275171	1207060
YDL238C	__________	-1.20	1484209	1233241	unknown	unknown
YDR357C	__________	+1.07	697356	749510	unknown	unknown
YER056C	RPL34A____	-1.05	1564408	1483972	protein synthesis	ribosomal protein L34A
YGL048C	RPT6______	+1.03	699172	722738	protein degradation	26S proteasome regulatory subunit
YGR159C	NSR1______	-1.40	2926835	2094431	nuclear protein targeting	NLS-binding protein
YHR172W	SPC97_____	-1.05	228131	216424	cytoskeleton	spindle pole body component
YJL049W	__________	-1.02	332810	326874	unknown	unknown
YKL046C	__________	+1.59	500785	795488	unknown	unknown
YLL048C	YBT1______	+1.10	139693	153577	transport	bile acid transporter of ABC family
YLR353W	BUD8______	-1.03	122632	119491	bud site selection, bipolar	unknown
YMR088C	__________	+1.86	294791	548978	unknown	unknown
YNL140C	__________	+1.10	330063	362245	unknown	unknown
YOL048C	__________	+1.53	179197	273785	unknown	unknown
YOR258W	__________	-1.06	218820	207273	unknown	unknown
YPL237W	SUI3______	-1.31	1219984	931550	protein synthesis	translation initiation factor eIF2 beta subunit
YBL058W	SHP1______	+1.03	462128	474157	glucose repression	(putative) Glc7p regulatory subunit
YDL060W	__________	-1.12	190497	170029	unknown	unknown
YDR187C	__________	-1.33	181369	135933	unknown	unknown
YFL051C	__________	-1.05	104004	99367	unknown	unknown; similar to Flo1p family of proteins
YGL251C	HFM1______	-1.08	212422	197434	unknown	DNA/RNA helicase, putative
YHR003C	__________	-1.22	738199	606856	unknown	unknown; similar to Ykl027p and weak similarity to E.
YIL150C	DNA43_____	+1.04	341813	354028	DNA replication	unknown
YJR027W	__________	+1.17	15958128	18593583	unknown	unknown; similar to E. coli molybdopterin-converting factor
YKR024C	DBP7______	-1.18	1519725	1284355	ribosome biogenesis	putative RNA helicase
YLR181C	__________	+1.03	523652	539318	unknown	unknown
YMR285C	__________	-1.04	396542	382433	unknown	unknown
YNR003C	RPC34_____	-1.20	395899	331095	transcription	RNA polymerase III 34 kD subunit
YOR082C	__________	-2.35	329327	139876	unknown	unknown
YPR153W	__________	-1.06	120148	113789	unknown	unknown
YBR130C	SHE3______	+1.10	270358	296846	cell polarity	asymmetric HO expression
YCR068W	__________	-1.07	117449	109527	unknown	unknown
YDR002W	YRB1______	-1.03	3130360	3033917	nuclear protein targeting	GTPase-activating protein for Ran
YDR367W	__________	-1.06	387159	365536	unknown	unknown
YGL060W	__________	+1.04	239546	249615	unknown	unknown
YGR167W	CLC1______	+1.15	1598950	1831282	endocytosis and secretion	clathrin light chain
YHR184W	SSP1______	-1.18	313464	264922	meiosis,nuclear division and spore formation	unknown
YJL061W	NUP82_____	-1.30	586177	449818	nuclear protein targeting	nuclear pore protein
YKL058W	TOA2______	-1.07	506874	472133	transcription	TFIIA 13.5 kD subunit

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YLL060C	GTT2______	-1.18	295465	250056	glutathione metabolism	glutathione transferase
YLR365W	__________	-1.07	114562	107042	unknown	unknown
YMR100W	MUB1______	+1.52	246411	374812	bud site selection	unknown
YNL152W	__________	-1.08	280980	260526	unknown	unknown
YOL058W	ARG1______	-1.76	399314	226971	arginine biosynthesis	arginosuccinate synthetase
YOR270C	VPH1______	-1.16	1991509	1716929	vacuolar acidification	vacuolar H+-ATPase 95 kD subunit
YPL249C	__________	-1.16	143596	123481	unknown	unknown
YBL070C	__________	+1.05	87714	92010	unknown	unknown
YDL072C	__________	+2.03	646705	1309958	unknown	unknown
YDR199W	__________	+1.21	193577	233368	unknown	unknown
YFL063W	__________	+1.01	121643	123260	unknown	unknown; similar to Gin11p and Ykl225p
YGL263W	COS12_____	-1.06	158372	149863	unknown	unknown; similar to subtelomerically-encoded proteins
YHR014W	SPO13_____	-1.08	122665	113656	meiosis	negative regulator of M phase (putative)
YIL161W	__________	-1.05	305921	290876	unknown	unknown
YJR039W	__________	+1.02	164628	168113	unknown	unknown; similar to Paramecium tetraurelia NADH
YKR036C	CAF4______	+1.12	256678	288681	catabolite repression	component of CCR4 transcriptional complex
YLR193C	__________	-1.16	289602	250076	unknown	unknown; similar to Msf1p
YML063W	RPS1B_____	+1.21	15410630	18596669	protein synthesis	ribosomal protein S1B
YMR295C	__________	+1.73	1161470	2005741	unknown	unknown
YNR015W	SMM1______	-1.15	652552	567892	protein synthesis, mitochondrial (putative)	unknown
YOR094W	ARF3______	+1.07	469899	504587	secretion	GTP-binding ADP-ribosylation factor
YPL070W	__________	+1.27	396806	503352	unknown	unknown
YPR161C	SGV1______	-1.04	451763	436343	cell cycle	protein kinase
YBR142W	MAK5______	-1.27	272197	213663	mRNA splicing	RNA helicase
YCR080W	__________	-1.02	87750	86022
YDR014W	__________	+1.03	106576	110258	unknown	unknown
YDR379W	RGA2______	+1.07	113313	121686	signaling	Rho-GTPase activating protein
YER076C	__________	-1.07	127441	118644	unknown	unknown; similar to KHR1 killer toxin
YGL072C	__________	+1.26	238492	299913	unknown	unknown
YGR179C	__________	+1.08	262428	284087	unknown	unknown; similar to chicken myosin heavy chain, cardiac
YHR196W	__________	-1.07	729297	683639	unknown	unknown
YJL073W	JEM1______	+1.46	375992	548852	mating; nuclear fusion	DnaJ-like protein
YKL070W	__________	+1.09	121364	132663	unknown	unknown; similar to Bacillus subtilis transcriptional
YLR005W	SSL1______	+1.12	446954	499115	transcription	TFIIH subunit
YLR377C	FBP1______	-1.01	144887	143776	gluconeogenesis	fructose-1,6-bisphosphatase
YMR112C	MED11_____	+1.71	273017	467447	transcription	RNA polymerase II mediator subunit
YNL164C	__________	-1.06	276607	261944	unknown	unknown
YOL070C	__________	+1.20	484412	578933	unknown	unknown
YOR282W	__________	+1.05	184301	193365	unknown	unknown
YPL258C	THI21_____	+1.06	174936	185175	thiamine metabolism (putative)	unknown
YBL082C	RHK1______	-1.06	465108	437069	protein glycosylation	Dol-P-Man dependent alpha-1,3- mannosyltransferase (putative)
YDL084W	SUB2______	+1.06	3193468	3388266	mRNA splicing	RNA helicase
YFR007W	__________	-1.12	121268	108046	unknown	unknown
YGR012W	__________	+1.13	500946	565512	unknown	unknown; similar to Cys4p
YHR025W	THR1______	-1.02	1424366	1393009	threonine biosynthesis	homoserine kinase
YIL172C	__________	-1.09	206598	189513	unknown	unknown; similar to alpha-D-glucosidase (maltase)
YJR051W	OSM1______	+1.00	423710	425737	anaerobic growth (putative)	fumarate reductase
YKR048C	NAP1______	+1.27	1003273	1272491	chromatin structure	nucleosome assembly protein
YLR205C	__________	-1.31	222155	169004	unknown	unknown
YML075C	HMG1______	-2.16	1520788	704822	sterol metabolism	3-hydroxy-3-methylglutaryl-coenzyme A reductase
YMR306W	FKS3______	-1.11	347966	313934	unknown	unknown; similar to Gls1p and Gls2p
YNR027W	__________	-1.02	269214	264042	unknown	unknown
YOR106W	VAM3______	-1.22	396530	325293	vacuole biogenesis	t-SNARE
YPL082C	MOT1______	-1.20	330345	276083	transcription	putative helicase
YPR173C	VPS4______	+1.11	859034	953877	vacuolar protein targeting	AAA ATPase family
YBR154C	RPB5______	-1.11	1046458	940131	transcription	shared subunit of RNA polymerases I, II, and III
YCR091W	KIN82_____	+1.07	127618	136869	unknown	protein kinase
YDR026C	__________	+1.04	154096	160670	unknown	unknown; similar to Reb1p
YDR391C	__________	+2.31	217502	501387	unknown	unknown
YER087W	__________	+1.14	161542	184790	unknown	unknown; similar to E. coli prolyl-tRNA synthetase
YGL084C	GUP1______	+1.16	270174	313769	glycerol utilization	glycerol transporter (putative)
YGR191W	HIP1______	-1.03	642261	621898	transport	histidine permease
YHR208W	BAT1______	+1.12	1540986	1719458	branched chain amino acid degradation	transaminase
YJL085W	EXO70_____	-1.05	367193	348111	secretion	exocyst complex subunit
YKL082C	__________	-1.39	1123914	807859	unknown	unknown
YLR017W	MEU1______	-1.01	819950	810828	glucose derepression	regulator of ADH2 expression
YLR389C	STE23_____	+1.28	253995	325518	mating	a-factor processing protease (putative)
YMR123W	PKR1______	-1.31	657107	500599	killer toxin sensitivity (Pichia farinosa toxin)	unknown
YNL176C	__________	+1.13	240479	272234	unknown	unknown
YOL082W	__________	+1.81	215945	390442	unknown	unknown
YOR294W	RRS1______	-1.67	1112624	667313	ribosome biogenesis (putative)	unknown
YPL270W	MDL2______	+1.11	310170	344746	transport	ATP-binding cassette (ABC) family
YBL094C	__________	+1.16	217496	251665	unknown	unknown; similar to Neurospora crassa chitin synthase
YDL096C	__________	-1.17	122460	104796	unknown	unknown
YDR219C	__________	+1.07	212500	226742	unknown	unknown
YFR019W	FAB1______	-1.06	101964	96124	mitosis	putative PIP 5-kinase
YGR024C	__________	+1.06	625632	661527	unknown	unknown
YHR037W	PUT2______	-1.21	192483	159396	amino acid biosynthesis	delta-1-pyrroline-5-carboxylate dehydrogenase
YIR007W	__________	-1.06	165204	156345	unknown	unknown; similar to endoglucanase
YJR063W	RPA12_____	-1.25	864632	689952	transcription	RNA polymerase I subunit
YKR060W	__________	-1.16	502770	432145	unknown	unknown
YLR217W	__________	+1.52	176447	268798	unknown	unknown
YML087C	__________	+1.02	224933	228449	unknown	unknown
YNR039C	ZRG17_____	+1.07	334044	358038	unknown	unknown; similar to Anopheles mitochondrial NADH
YOR118W	__________	-1.09	116238	106314	unknown	unknown
YPL094C	SEC62_____	+1.19	1313591	1556949	secretion	ER protein translocation subcomplex subunit
YPR185W	APG13_____	-1.03	1080672	1050432	autophagy	unknown
YBR165W	UBS1______	-1.00	120819	120569	protein degradation, ubiquitin-mediated	regulates Cdc34p (ubiquitin-conjugating enzyme)
YCR102C	__________	-1.06	125531	118759	unknown	unknown; similar to Bacillus subtilis sorbitol
YDR036C	__________	-1.04	209379	200592	unknown	unknown; similar to enoyl CoA hydratase
YDR403W	DIT1______	+1.02	113768	116307	sporulation, spore wall biogenesis	synthesizes dityrosine precursor
YER098W	UBP9______	+1.09	153869	168293	protein degradation, ubiquitin-mediated	ubiquitin C-terminal hydrolase
YGL096W	__________	-1.04	102551	98595	unknown	unknown; similar to Cup9p
YGR203W	__________	-1.04	671971	645641	unknown	unknown
YHR217C	__________	-1.03	655202	636711	unknown	unknown
YJL097W	__________	+1.16	843175	976749	unknown	unknown
YKL094W	YJU3______	+1.39	566268	786400	unknown	unknown; similar to E.coli hypothetical protein
YLR029C	RPL15A____	+1.08	15807570	17036444	protein synthesis	ribosomal protein L15A
YLR401C	__________	-1.35	422638	313687	unknown	unknown; similar to R. capsulatus protein nifR3
YMR135C	__________	+1.04	304950	316753	unknown	unknown

		factor	median_fitted_data	median_fitted_data	gene annotation	gene annotation
		condition1	condition0(CONTROL)	condition1	functional category	description
		delta mnn9	wt, strain AR27	delta mnn9


YNL188W	KAR1______	-1.13	346466	305569	cytoskeleton	nuclear fusion; also spindle
YOL094C	RFC4______	-1.23	553758	451312	DNA replication	replication factor C, 37 kDa subunit
YPL282C	__________	-1.10	97381	88222	unknown	unknown; similar to other subtelomerically-encoded proteins