Table of Contents

Original Research Articles

Leppek K, Schott J, Reitter S, Poetz F, Hammond MC, Stoecklin G. Roquin promotes constitutive mRNA decay via a conserved class of stem-loop recognition motifs. Cell 2013;153:869-81.

Ozgur S, Stoecklin G. Role of Rck-Pat1b binding in assembly of processing-bodies. RNA Biol 2013;10 [Epub ahead of print].

Färber V, Erben E, Sharma S, Stoecklin G, Clayton C. Trypanosome CNOT10 is essential for the integrity of the NOT deadenylase complex and for degradation of many mRNAs. Nucleic Acids Res 2013;41:1211-22.

Hofmann S, Cherkasova V, Bankhead P, Bukau B, Stoecklin G. Translation suppression promotes stress granule formation and cell survival in response to cold shock. Mol Biol Cell 2012;23:3786-800.

Tuorto F, Liebers R, Musch T, Schaefer M, Hofmann S, Kellner S, Frye M, Helm M, Stoecklin G, Lyko F. RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat Struct Mol Biol 2012;19:900-5.

Ruggieri A, Dazert E, Metz P, Hofmann S, Bergeest JP, Mazur J, Bankhead P, Hiet MS, Kallis S, Alvisi G, Samuel CE, Lohmann V, Kaderali L, Rohr K, Frese M, Stoecklin G, Bartenschlager R. Dynamic oscillation of translation and stress granule formation mark the cellular response to virus infection. Cell Host Microbe 2012;12:71-85.

Spasic M, Friedel CC, Schott J, Kreth J, Leppek K, Hofmann S, Ozgur S, Stoecklin G. Genome-wide assessment of AU-rich elements by the AREScore algorithm. PLoS Genet 2012;8:e1002433.

Helfer S, Schott J, Stoecklin G, Förstemann K. AU-rich Element-Mediated mRNA Decay can occur independently of the miRNA machinery in Mouse Embryonic Fibroblasts and Drosophila S2-cells. PLoS One 2012;7:e28907.

Clement SL, Scheckel C, Stoecklin G, Lykke-Andersen J. Phosphorylation of TTP by MK2 impairs ARE-mRNA decay by preventing deadenylase recruitment. Mol Cell Biol 2011;31:256-66.

Ozgur S, Chekulaeva M, Stoecklin G. Human Pat1b Connects Deadenylation with mRNA Decapping and Controls the Assembly of Processing-Bodies. Mol Cell Biol 2010;30:4308-23.

Stoecklin G, Tenenbaum SA, Mayo T, Chittur SV, George AD, Baroni TE, Blackshear PJ, Anderson P. Genome-wide analysis identifies interleukin-10 mRNA as target of tristetraprolin. J Biol Chem 2008;283:11689-99.

Schwede A, Ellis L, Luther J, Carrington M, Stoecklin G, Clayton C. A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells. Nucl Acids Res 2008;36:3374-88.

Yamasaki S, Stoecklin G, Kedersha N, Simarro M, Anderson P. T-cell intracellular antigen-1 (TIA-1)-induced translational silencing promotes the decay of selected mRNAs. J Biol Chem 2007;282:30070-77.

Sun L, Stoecklin G, Van Way S, Hinkovska-Galcheva V, Guo RF, Anderson P, Shanley TP. TTP/14-3-3 complex formation protects TTP from dephosphorylation by protein phosphatase 2A and stabilizes TNF-alpha mRNA. . J Biol Chem 2007; 282:3766-77.

Benjamin D, Colombi M, Stoecklin G, Moroni C. A GFP-based assay for monitoring post-transcriptional regulation of ARE-mRNA turnover. Mol Biosyst 2006;2:561-7.

Stoecklin G, Mayo T, Anderson P. ARE-mRNA degradation requires the 5'-3' decay pathway. EMBO Rep 2006;7:72-7.

Kedersha N, Stoecklin G, Ayodele M, Yacono P, Lykke-Andersen J, Fritzler MJ, Scheuner D, Kaufman RJ, Golan DE, Anderson P. Stress granules and Processing Bodies are dynamically linked sites of mRNP remodeling. J Cell Biol 2005;169:871-84.

Schmidlin M, Lu M, Leuenberger SA, Stoecklin G, Mallaun M, Gross B, Gherzi R, Hess D, Hemmings BA, Moroni C. The ARE-dependent mRNA-destabilizing activity of BRF1 is regulated by protein kinase B. EMBO J 2004;23:4760-69.

Gilks N, Kedersha N, Ayodele M, Shen L, Stoecklin G, Dember LM, Anderson P. Stress granule assembly is mediated by prion-like aggregation of TIA-1. Mol Biol Cell 2004;15:5383-98.

Stoecklin G, Stubbs T, Kedersha N, Wax S, Rigby WFC, Blackwell TK, Anderson P. MK2-induced tristetraprolin:14-3-3 complexes prevent stress granule association and ARE-mRNA decay. EMBO J 2004, 23:1313-24.

Stoecklin G, Lu M, Rattenbacher B, Moroni C. A constitutive decay element promotes tumor necrosis factor alpha mRNA degradation via an AU-rich element-independent pathway. Mol Cell Biol 2003;23:3506-15.

Stoecklin G, Gross B, Ming XF, Moroni C. A novel mechanism of tumor suppression by destabilizing AU-rich growth factor mRNA. Oncogene 2003;22:3554-61.

Stoecklin G, Colombi M, Raineri I, Leuenberger S, Mallaun M, Schmidlin M, Gross B, Lu M, Kitamura T, Moroni C. Functional cloning of BRF1, a regulator of ARE-dependent mRNA turnover. EMBO J 2002;21:47099-18.

Chen CY, Gherzi R, Ong S, Chan E, Raijmakers R, Pruijn GJM, Stoecklin G, Moroni C, Mann M, Karin M. AU-binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 2001;107:451-64.

Stoecklin G, Stoeckle P, Lu M, Muehlemann O, Moroni C. Cellular mutants define a common mRNA degradation pathway targeting cytokine AU-rich elements. RNA 2001;7:1578-88.

Ming XF, Stoecklin G, Lu M, Looser R, Moroni C. Parallel and independent regulation of interleukin-3 mRNA turnover by phosphatidylinositol 3-kinase and p38 mitogen-activated protein kinase. Mol Cell Biol 2001;21:5778-89.

Stoecklin G, Ming XF, Looser R, Moroni C. Somatic mRNA turnover mutants implicate tristetraprolin in the interleukin-3 mRNA degradation pathway. Mol Cell Biol 2000;20:2753-63.

Stoecklin G, Hahn S, Moroni C. Functional hierarchy of AUUUA motifs in mediating rapid interleukin-3 mRNA decay. J Biol Chem 1994;269:28591-7.

Review Articles

Stoecklin G and Mühlemann O. RNA decay mechanisms: Specificity through diversity. Biochim Biophys Acta, 2013 in press.

Stoecklin G and Kedersha N. Relationship of GW/P-bodies with stress granules. Adv Exp Med Biol 2013;768:197-211.

Leppek K, Schott J, Stoecklin G. Protein synthesis and translational control: at eye level with the ribosome. EMBO Rep 2011;12:1214-16.

Schott J, Stoecklin G. Networks controlling mRNA decay in the immune system,  Wiley Interdiscip Rev RNA 2010;1:432-56.

Kulkarni M, Ozgur S, Stoecklin G. On track with P-bodies. Biochem Soc Trans 2010;38:242-52.

Sandler H, Stoecklin G. Control of mRNA decay by phosphorylation of tristetraprolin. Biochem Soc Trans 2008;36:491-6.

Stoecklin G, Anderson P. In a tight spot: ARE-mRNAs at processing bodies. Genes & Dev 2007;21:627-31.

Stoecklin G, Anderson P. Post-transcriptional mechanism regulating the inflammatory response. Adv Immunol 2006;89:1-37.

Newbury S, Mühlemann O and Stoecklin G. Turnover in the Alps: an mRNA perspective. EMBO Rep 2006;7:143-8.

Anderson P, Phillips K, Stoecklin G, Kedersha N. Posttranscriptional regulation of pro-inflammatory proteins. J Leuk Biol 2004;76:42-47.