Analysis of Alu exonization and alternative splicing in cancer genes
Number of publications: 11
Israeli Partner: G. Ast, Tel Aviv Univ.
German Partner: A. Hotz-Wagenblatt, S. Suhai, DKFZ
Publications
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Amit, M., Sela, N., Keren, H., Melamed, Z., Muler, I., Shomron, N., Izraeli, S., Ast, G.
Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene 8, BMC Mol Biol, 109, 2007 |
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Gal-Mark, N., Schwartz, S., Ast, G.
Alternative splicing of Alu exons--two arms are better than one 36 (6), Nucleic Acids Res, 2012-23, 2008 |
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Goren, A., Kim, E., Amit, M., Bochner, R., Lev-Maor, G., Ahituv, N., Ast, G.
Alternative approach to a heavy weight problem 18 (2), Genome Res, 214-20, 2008 |
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Kim, E., Magen, A., Ast, G.
Different levels of alternative splicing among eukaryotes 35 (1), Nucleic Acids Res, 125-31, 2007 |
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Koren, E., Lev-Maor, G., Ast, G.
The emergence of alternative 3' and 5' splice site exons from constitutive exons 3 (5), PLoS Comput Biol, e95, 2007 |
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Lev-Maor, G., Goren, A., Sela, N., Kim, E., Keren, H., Doron-Faigenboim, A., Leibman-Barak, S., Pupko, T., Ast, G.
The "alternative" choice of constitutive exons throughout evolution 3 (11), PLoS Genet, e203, 2007 |
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Lev-Maor, G., Sorek, R., Levanon, E. Y., Paz, N., Eisenberg, E., Ast, G.
RNA-editing-mediated exon evolution 8 (2), Genome Biol, R29, 2007 |
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Levy, A., Sela, N., Ast, G.
TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates 36, Nucleic Acids Res, D47-52, 2008 |
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Mersch, B., Gepperth, A., Suhai, S., Hotz-Wagenblatt, A.
Automatic detection of exonic splicing enhancers (ESEs) using SVMs 9, BMC Bioinformatics, 369, 2008 |
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Mersch, B., Sela, N., Ast, G., Suhai, S., Hotz-Wagenblatt, A.
SERpredict: detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements 8, BMC Genet, 78, 2007 |
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Sela, N., Mersch, B., Gal-Mark, N., Lev-Maor, G., Hotz-Wagenblatt, A., Ast, G.
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome 8 (6), Genome Biol, R127, 2007 |