Molecular Biology of Centrosomes and Cilia

Dr. Bashar Ibrahim

Dr. Bashar Ibrahim

Dr. Bashar Ibrahim

Position:

Postdoctoral fellow

Affiliation:

DKFZ-ZMBH-Alliance German Cancer Research Center Molecular Biology of Centrosomes and Cilia

Phone:

+49 6221 42 3453

Building:

TP4

Room:

3.106

Qualifications

2004 - 2008     Dr. rer. nat. in Bioinformatics with "summa cum laude", Friedrich Schiller University Jena, Germany
1998 - 2000     MSc in Applied mathematics, University of Mosul, Iraq
1994 - 1998     BSc in Mathematics, University of Mosul, Iraq


Publications

Peer-reviewed articles in journals

Caydasi, A.K., Ibrahim, B. and Pereira, G. (2010).
Monitoring spindle orientation: spindle position checkpoint in charge.
Cell Div., 5:28.

Caydasi, A.K., Kurtulmus, B. , Orrico, M.I.L. , Hofmann, A. , Ibrahim, B. and Pereira, G. (2010).
Elm1 kinase activates the spindle position checkpoint kinase Kin4.
J. Cell Biol., 190(6):975-989.
Comment in: Leslie , M. (2010) Elm1 sparks the SPOC J. Cell Biol., 190 (6): 944.

Gerd Grünert, Bashar Ibrahim, Thorsten Lenser, Maiko Lohel, Thomas Hinze, Peter Dittrich (2010)
Rule-based spatial modeling with diffusing, geometrically constrained molecules
BMC Bioinformatics, 11:307.

Maiko Lohel, Bashar Ibrahim, Stephan Diekmann, Peter Dittrich (2009)
The role of localization in the operation of the mitotic spindle assembly checkpoint
Cell Cycle, 8(16), 2650-60.

Bashar Ibrahim, Eberhard Schmitt, Peter Dittrich , Stephan Diekmann (2009)
In-silico study of kinetochore control, amplification, and inhibition effects in MCC assembly
Biosystems, 95(1), 35-50. "BioModels"

Bashar Ibrahim, Peter Dittrich , Stephan Diekmann, Eberhard Schmitt (2008)
Mad2 binding is not sufficient for complete Cdc20 sequestering in mitotic transition control (an in silico study)
Biophys Chem., 134, 93–100. "BioModels"

Bashar Ibrahim, Stephan Diekmann, Eberhard Schmitt, Peter Dittrich (2008)
In-silico Modeling of the Mitotic Spindle Assembly Checkpoint
PLoS ONE, 3(2): e1555. "Convey and Dissociation BioModels"

Bashar Ibrahim, Peter Dittrich , Stephan Diekmann, Eberhard Schmitt (2007)
Stochastic effects in a compartmental model for mitotic checkpoint regulation
JIB, 4(3):66.

Peer-reviewed articles in proceedings

Thomas Hinze, Raffael Fassler, Gabi Escuela, Bashar Ibrahim, Stefan Schuster. Computation by Synthetic Cell Signaling and Oscillating Processes Modelled using Mass-Action Kinetics. In: K. Ambos-Spies, B. Löwe, W. Merkle (Eds.), Proceedings of the Fifth Conference on Computability in Europe (CiE2009), pp. 186-195, University of Heidelberg, Germany, 2009.


Hendrik Rohn, Bashar Ibrahim, Thorsten Lenser, Thomas Hinze, Peter Dittrich (2008)
Enhancing Parameter Estimation of Biochemical Networks by Exponentially Scaled Search Steps
In: E. Marchiori and J. H. Moore (Eds.), Proceedings of the Sixth European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO), Napoli, LNCS 4973, pp. 177–187, Springer Verlag.

Thorsten Lenser, Thomas Hinze, Bashar Ibrahim, Peter Dittrich (2007)
Towards Evolutionary Network Reconstruction Tools for Systems Biology
In: E. Marchiori, J.H. Moore, J.C. Rajapakse (Eds.), Proceedings of the Fifth European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO), Valencia, LNCS 4447, pp 132-142, Springer Verlag


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